BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16570.2
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911461 jgi|Araly1|911461|Al_scaffold_0001_1715 2100 0.0
Ahg490368 jgi|Araly1|490368|fgenesh2_kg.6__3502__AT1G16570.1 1033 0.0
Ahg943526 jgi|Araly1|943526|scaffold_604070.1 588 5e-167
Ahg490363 jgi|Araly1|490363|fgenesh2_kg.6__3497__AT1G16560.3 154 2e-36
Ahg943525 jgi|Araly1|943525|scaffold_604069.1 86.1 8e-16
> Ahg911461 jgi|Araly1|911461|Al_scaffold_0001_1715
Length=1398
Score = 2100 bits (1137), Expect = 0.0
Identities = 1209/1244 (97%), Gaps = 4/1244 (0%)
Strand=Plus/Plus
Query 53 ATGGGGAAAAGAGGAAGGGCTTGTGTAGTGGTACTTGGAGATCTTGGTCGAAGTCCTCGG 112
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAAGAGGAAGGGCTTGTGTAGTTGTACTTGGAGATCTTGGTCGAAGTCCTCGG 60
Query 113 ATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTGGACATTGTTGCA 172
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTAGACATTGTTGCA 120
Query 173 TATGGAGGTTCTATACCCCATGAAGCTGTTCTAAATCACCCATCAATCCACATCCATACC 232
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TATGGAGGTTCTATACCCCATGAAGCTGTTCTAAATCACCCATCGATCCACATCCATACC 180
Query 233 ATGGCGCAGCCTCGATTCATTCAG-TACTTTCCAAAGATACTTTATCCTGTAACTCTCTT 291
||||||||||| |||||| ||||| | ||| |||||||||||||||||||||||||||||
Sbjct 181 ATGGCGCAGCCACGATTCCTTCAGCT-CTTGCCAAAGATACTTTATCCTGTAACTCTCTT 239
Query 292 GCTCAAGGCATTTATTCAGTTTACAATGCTTCTCTGGTTTCTTTTCGTTAAAGTACCAGC 351
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 240 GCTCAAGGCATTTATTCAGTTCACAATGCTTCTCTGGTTTCTTTTCGTAAAAGTACCAGC 299
Query 352 GCCTGACATTTTCTTGGTCCAGAATCCTCCTTCCGTCCCAACTCTAATTGCTGTTAAGTG 411
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 GCCTGACATTTTCTTGGTCCAGAATCCTCCTTCCGTTCCAACCCTAATTGCTGTTAAGTG 359
Query 412 GGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACGTT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 GGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACATT 419
Query 472 GTTGGCATTGTCTTTAGGAAGAAACAATTTGCTTGTATCCTTATACCGCTGGTCTGAGAA 531
|||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 420 GTTGGCGTTGTCTTTAGGAAGAAACAATTTGTTTGTATCCTTATACCGCTGGTTTGAGAA 479
Query 532 TCATTATGGAAAGATGGCAACAGGTTCGCTATGTGTCACAAAAGCAATGCAACATGAACT 591
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 480 TCATTATGGAAAGATGGCAACAGGTTCACTGTGTGTCACAAAAGCAATGCAACATGAACT 539
Query 592 GGATCAGAATTGGGGTGTGAGAGCCAAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCG 651
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 GGATCAGAATTGGGGAGTGAGAGCCCAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCG 599
Query 652 TCCCGCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAGGAAGGATCTTTGCCA 711
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 600 TCCCGCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAAAAAGGATCTGTGCCA 659
Query 712 TCCAATTGGTGTCTATGATTTCATTAGTAGAGAGTTGGAAAACCAAGAGCTTAATGAAAC 771
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCAATTGGTGTCTATGATATCATTAGTAGAGAGTTGGAAAACCAAGAGCTTAATGAAAC 719
Query 772 CCTTTTTACTACCAA-ATTTAATGCTGACATCTCGCTGAAGCAAAACAGACCAGCTCTTG 830
||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 720 CCTTTTTACTACCAAGA-TTAATACTGACATCTCGCTGAAGCAAAACAGACCAGCTCTTG 778
Query 831 TTGTGAGTAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTGGAAGCTGCAG 890
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTGTGAGCAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTGGAAGCTGCAG 838
Query 891 TGATGTATGATCGGCGTGTGGCTGCAAGATCAAAAGGAAGTGAAACAGCTGAAATTTCAG 950
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 TGATGTATGATCGGCGTGTGGCTGCAAGATCCAAAGGAAGTGAAACAGCTGAAATTTCAG 898
Query 951 AAGAGCAACACCATTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGG 1010
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGAGCAACACCTTTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGG 958
Query 1011 AGATGTACGAGGAGAAAATCAAACGATTAAACCTTAGACATGTGGCATTCCGTACAATGT 1070
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 959 AGATGTACGAGGAGAAAATCAAACGATTAAACCTCAGACATGTGGCATTCCGTACCATGT 1018
Query 1071 GGCTCGCAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTAC 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GGCTCGCAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTAC 1078
Query 1131 ACACTTCCTCGTCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCC 1190
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ACACTTCCTCATCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCC 1138
Query 1191 TCCCAGTTTGCTCGGTTTCCTACTCATGCATTCAAGAACTCGTTAAAGATGGGAAGAACG 1250
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1139 TCCCAGTTTGCTCGGTTTCCTATTCATGCATTCAAGAACTCGTTAAAGATGGGAAGAATG 1198
Query 1251 GACTTTTGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1294
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GACTTTTGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1242
Score = 263 bits (142), Expect = 3e-69
Identities = 152/157 (97%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 1387 GATTCTCTTCAAGGGTTTTCCAGGGAACTGTGATGCACTAATGTCGCTTAAAGCGGGTGC 1446
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1242 GATTCTCTTCAAGGGTTTTCCCGGGAACTGTGATGCCCTAATGTCTCTTAAAGCGGGTGC 1301
Query 1447 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1361
Query 1507 AATCACTCAGGTCGTGTCTCAAATTGCAGATTCATGA 1543
||||||||||||||||||||||| ||||||||||||
Sbjct 1362 GATCACTCAGGTCGTGTCTCAAATAGCAGATTCATGA 1398
> Ahg490368 jgi|Araly1|490368|fgenesh2_kg.6__3502__AT1G16570.1
Length=1436
Score = 1033 bits (559), Expect = 0.0
Identities = 782/878 (89%), Gaps = 61/878 (7%)
Strand=Plus/Plus
Query 50 ACGATGGGGAAAAGAGGAAGGGCTTGTGTAGTGGTACTTGGAGATCTTGGTCGAAGTCCT 109
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 ACGATGGGTAAAAGAGGAAGGGCTTGTGTAGTGGTACTTGGAGATCTTGGTCGAAGTCCT 62
Query 110 CGGATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTGGACATTGTT 169
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 63 CGGATGCAATATCACGCTCTTTCTCTTGCTCGTCAGGCATCATTTCAAGTAGACATTGTT 122
Query 170 GCATATGGAG-GTTCTATACCCCATGAAGCTGTTCTAAATCACCCATCAATCCACATCCA 228
|||||||||| | | || || || ||||||||||||||||||| |||||||||||
Sbjct 123 GCATATGGAGAATGC-AT-TGTTAT-AATCTGTTCTAAATCACCCATCGATCCACATCCA 179
Query 229 TACCATGGCGCAGCCTCGATTCATTCAGTACTTTCCAAAGATACTTTATCCTGTAACTCT 288
||||||||||||||| || |||| | || | || | |||||||||||||||||
Sbjct 180 TACCATGGCGCAGCCACG----ATTC----C-TT-C--AGCT-CTTTATCCTGTAACTCT 226
Query 289 CTTGCTCAAGGCATTTATTCAGTTTACAATGCTTCTCTGGTTTCTTTTCGTTAAAGTACC 348
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 227 CTTGCTCAAGGCATTTATTCAGCTTACAATGCTTCTCTGGTTTCTTTTCGTAAAAGTACC 286
Query 349 AGCGCCTGACATTTTCTTGGTCCAGAATCCTCCTTCCGTCCCAACTCTAATTGCTGTTAA 408
||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 287 AGCGCCTGACACTTTCTTGGTCCAGAATCCTCCTTCCGTTCCAACCCTAATTGCTGTTAA 346
Query 409 GTGGGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATAC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 GTGGGCGAGTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATAC 406
Query 469 GTTGTTGGCATTGTCTTTAGGAAGAAACAATTTGCTTGTATCCTTATACCGCTGGTCTGA 528
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 407 ATTGTTGGCATTGTCTTTAGGAAGAAACAATATGTTTGTATCCTTATACCGCTGG---G- 462
Query 529 GAATCATTATGGAAAGATGGCAACAGGTTCGCTATGTGTCACAAAAGCAATGCAACATGA 588
||| | | | ||||||||||||| ||| | || ||||||||||||||
Sbjct 463 GAA--A----G-A----TGGCAACAGGTTCACTA------A-AA--GCAATGCAACATGA 502
Query 589 ACTGGATCAGAATTGGGGTGTGAGAGCCAAAGTGTTATATGATCAGCCTCCTGAGTTTTT 648
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 503 ACTGGATCAGAATTGGGGAGTGAGAGCCCAAGTGTTATATGATCAGCCTCCTGAGTTTTT 562
Query 649 CCGTCCCGCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAGGAAGGATCTTTG 708
|| ||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 563 CCATCCCGCTTTACTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAAAAATGATCTTTG 622
Query 709 CCATCCAATTGGTGTCTATGATTTCATTAGTAGAGAGTTGGAAAACCAAGAGCTTAATGA 768
|||||||||| | | | | | |||| |||||||||||||||||||||||
Sbjct 623 CCATCCAATT-------A-G-T---A---G-AGAG--TTGGAAAACCAAGAGCTTAATGA 664
Query 769 AACCCTTTTTACTACCAAA-TTTAATGCTGACATCTCGCTGAAGCAAAACAGACCAGCTC 827
||||||||||||||||||| |||| | |||||||||| ||||||||||||||||||||||
Sbjct 665 AACCCTTTTTACTACCAAAATTTA-TACTGACATCTCCCTGAAGCAAAACAGACCAGCTC 723
Query 828 TTGTTGTGAGTAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTGGAAGCTG 887
||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 724 TTGTTCTGAGCAGTACAAGCTGGACCCCTGATGAAAATTTTGGTATCCTACTAGAAGCTG 783
Query 888 CAGTGATGTATGATCGGCGTGTGGCTGCAAGATCAAAA 925
|||| ||||||||||||||||||||||||||||| |||
Sbjct 784 CAGTAATGTATGATCGGCGTGTGGCTGCAAGATCCAAA 821
Score = 586 bits (317), Expect = 2e-166
Identities = 331/338 (98%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 957 AACACCATTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGGAGATGT 1016
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 AACACCTTTATCCCAATTTGTTGTTCATCATTACAGGTAAAGGACCTGAAAAGGAGATGT 879
Query 1017 ACGAGGAGAAAATCAAACGATTAAACCTTAGACATGTGGCATTCCGTACAATGTGGCTCG 1076
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 880 ACGAGGAGAAAATCAAACGCTTAAACCTCAGACATGTGGCATTCCGTACAATGTGGCTCC 939
Query 1077 CAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTACACACTT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CAGCTGAAGATTACCCATTGCTTTTAGGTTCTGCAGATCTCGGTGTCTGCTTACACACTT 999
Query 1137 CCTCGTCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCCTCCCAG 1196
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 CCTCATCGGGTTTAGACCTTCCCATGAAGGTTGTTGATATGTTTGGATGTGGCCTCCCAG 1059
Query 1197 TTTGCTCGGTTTCCTACTCATGCATTCAAGAACTCGTTAAAGATGGGAAGAACGGACTTT 1256
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1060 TTTGCTCGGTTTCCTACTCATGCATTCAAGAACTCGTTAAAGATGGAAAGAATGGACTTT 1119
Query 1257 TGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1294
||||||||||||||||||||||||||||||||||||||
Sbjct 1120 TGTTTTCATCTTCATCAGAATTAGCAGATCAATTATTG 1157
Score = 327 bits (177), Expect = 1e-88
Identities = 251/282 (89%), Gaps = 23/282 (8%)
Strand=Plus/Plus
Query 1387 GATTCTCTTCAAGGGTTTTCCAGGGAACTGTGATGCACTAATGTCGCTTAAAGCGGGTGC 1446
||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 1157 GATTCTCTTCAAGGGTTTTCCCGGGAACTGTGATGCCCTAATGTCGCTTAAAGTGGGTGC 1216
Query 1447 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 AATGGAGACTGGTTCTTCGGGTCGATGGGCTACAGAGTGGGAAGATTGTGCAAAACCTTT 1276
Query 1507 AATCACTCAGG----TC-GT-G----TCTC-----------AAATTGCAGATTCATGAAA 1545
|||||||||| || || | |||| |||| ||||||||||||||
Sbjct 1277 GATCACTCAGGAAAATCCGTCGGCCCTCTCTGTCGTGTCTCAAATAGCAGATTCATGAAA 1336
Query 1546 GAGAAGACTCAAAATCGATGGGCTTGAGAGTTTCTCACACAACTGCTTTTGTAGATCCAA 1605
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1337 GAGAAGACTCAAAATCGATGGGCTTGAGAGTTTCTCACA-A-CTGCTTTTGTAGATCCAA 1394
Query 1606 ATTTTTATACAAAATCCTATAGATTACAAGATTGTCTCGAAA 1647
|||||| |||| |||| |||||||||||||||||||||||||
Sbjct 1395 ATTTTTGTACACAATCATATAGATTACAAGATTGTCTCGAAA 1436
> Ahg943526 jgi|Araly1|943526|scaffold_604070.1
Length=642
Score = 588 bits (318), Expect = 5e-167
Identities = 390/423 (92%), Gaps = 11/423 (3%)
Strand=Plus/Plus
Query 297 AGGCATTTATTCAGTTTACAATGCTTCTCTGGTTTCTTTTCGTTAAAGTACCAGCGCCTG 356
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGGCATTTATTCAGCTTACAATGCTTCTCTGGTTTCTTTTCGTAAAAGTACCAGCGCCTG 60
Query 357 ACATTTTCTTGGTCCAGAATCCTCCTTCCGTCCCAACTCTAATTGCTGTTAAGTGGGCGA 416
||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 61 ACACTTTCTTGGTCCAGAATCCTCCTTCCGTTCCAACCCTAATTGCTGTTAAGTGGGCGA 120
Query 417 GTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACGTTGTTGG 476
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 GTTCATGGAGACTTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACATTGTTGG 180
Query 477 CATTGTCTTTAGGAAGAAACAATTTGCTTGTATCCTTATACCGCTGGTCTGAGAATCATT 536
||||||||||||||||||||||| || ||||||||||||||||||||| || | | ||
Sbjct 181 CATTGTCTTTAGGAAGAAACAATATGTTTGTATCCTTATACCGCTGGTATG-GCTTGATA 239
Query 537 ATGG-AAAGATGGCAACAGGTTCGCTATGTGTCACAAAAGCAATGCAACATGAACTGGAT 595
|||| |||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 240 ATGGGAAAGATGGCAACAGGTTCACTA------A-AA--GCAATGCAACATGAACTGGAT 290
Query 596 CAGAATTGGGGTGTGAGAGCCAAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCGTCCC 655
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 291 CAGAATTGGGGAGTGAGAGCCCAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCATCCC 350
Query 656 GCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAGGAAGGATCTTTGCCATCCA 715
||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 351 GCTTTACTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAAAAATGATCTTTGCCATCCA 410
Query 716 ATT 718
|||
Sbjct 411 ATT 413
Score = 169 bits (91), Expect = 8e-41
Identities = 104/110 (95%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 742 AGAGTTGGAAAACCAAGAGCTTAATGAAACCCTTTTTACTACCAAA-TTTAATGCTGACA 800
|||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 509 AGAGTTGGAAAACCAAGAGCTTAATGAAACCCTTTTTACTACCAAAATTTA-TACTGACA 567
Query 801 TCTCGCTGAAGCAAAACAGACCAGCTCTTGTTGTGAGTAGTACAAGCTGG 850
|||| ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 568 TCTCCCTGAAGCAAAACAGACCAGCTCTTGTTCTGAGCAGTACAAGCTGG 617
> Ahg490363 jgi|Araly1|490363|fgenesh2_kg.6__3497__AT1G16560.3
Length=1319
Score = 154 bits (83), Expect = 2e-36
Identities = 111/124 (90%), Gaps = 3/124 (2%)
Strand=Plus/Minus
Query 1598 AGATCCAAATTTTTATACAAAATCCTATAGATTACAAGATTGTCTCGAAAATATTGACAG 1657
|||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| ||
Sbjct 1319 AGATCCAAATTTTTGTACACAATCATATAGATTACAAGATTGTCTCG-AAATATTGTCAT 1261
Query 1658 AATCTGAATT-CAAAATGGTTTCGCATGAGTCTGTGTATGAATGAGTAAATGATATCAAA 1716
|||||| ||| | ||||| ||| ||| |||||| ||||||||||||||||||||||||||
Sbjct 1260 AATCTG-ATTCCGAAATGATTTGGCAGGAGTCTTTGTATGAATGAGTAAATGATATCAAA 1202
Query 1717 ATCT 1720
||||
Sbjct 1201 ATCT 1198
> Ahg943525 jgi|Araly1|943525|scaffold_604069.1
Length=203
Score = 86.1 bits (46), Expect = 8e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 185 ATACCCCATGAAGCTGTTCTAAATCACCCATCAATCCACATCCATACCATGG 236
|||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 52 ATACCCCATGAAGCTGTTCTAAATCACCCATCGATCCACATCCCTACCATGG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5