BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16590.1
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920564 jgi|Araly1|920564|scaffold_101845.1 966 0.0
> Ahg920564 jgi|Araly1|920564|scaffold_101845.1
Length=687
Score = 966 bits (523), Expect = 0.0
Identities = 640/695 (92%), Gaps = 13/695 (2%)
Strand=Plus/Plus
Query 70 TCTCGGAGA-TTGTGAGACGCTAATGAGTCGGAAGGATGATAATCAGTCAGGAGAAGTTG 128
|||| |||| || ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 4 TCTCTGAGACTT-TGAGACGCTAATGGGTCTGAAGGATGATAATCAGTCAGGAGAAGTTG 62
Query 129 GTCGTACTCTGGTGGACTTTATGGAAGTAGCCATCACAATGATTGTATACCTCAAAGGTT 188
| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 63 CTGGTACTGTGGTGGAATTTATGGAAGTAGCCATCACAATGATTGTATTCCTCAAAGGTT 122
Query 189 TTTACCCATCTGCGGCATTTGAAAGGAGGAGATATATGAATGTGGTGGTGCAAAGAGCAA 248
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 123 TTTACCCATCTGCGGCATTTGAAAGGCGGAGATATATGAATGTGGTGGTGCAAAGAGCTA 182
Query 249 GGCATCCTGAGCTACGCGACTATATTCACTCTGCTGCTTCTGGACTTCTTCCTTTTATTG 308
| |||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||
Sbjct 183 GACATCCTGAGCTACGTGACTATATTCACTCTGCTGCATATGGGCTTCTTCCTTTTATTC 242
Query 309 AAAAGGGTCTTGTTGAGAGAGTAGCAGTCGTGTTTTT-CAGCGAGGATAATGTTCCTGTA 367
||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||||
Sbjct 243 AAAAGGGTCTTGTTGAGAGAGTAGCAGTCAT-TTTTTCCAGCAAGGATAATGTTCCTGTA 301
Query 368 GAGAGGTTCATCTTCAAGATCACGATTAAACCGTCTTGCGCTGCTTTAGTAGAAGAGGGT 427
|||||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 302 GAGAGGTTCATCTTCAAGCTCACGATTAACCCGTCTTCCGCTGCTTTTGTAGAAGAGGGT 361
Query 428 CAACTGGAGTTTGCGCTTAGGTCCTTCTTAATCAAGCTTTCCGTCTCAAAATCCCTAGTC 487
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 CAACTCCAGTTTGCGCTTAGGTCCTTCTTAATCAAGCTTTCCGTCTCAAAATCCCTTGTC 421
Query 488 AAACCTCTTCCCCTAAATTGTAGATGGGAGGTAACGGCTTATCTGAGGTCACTTCCTCAA 547
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 422 AAACCTCTTCCCCAAAATTGTAGATGGGAGGTAACGGCTTATTTGAGGTCACTTCCTCAA 481
Query 548 GTGGGTTCAAGCAAAGAAGCAGAGCTGTGGATTCCAACAGACACAAAGCAGTGGCAGAAC 607
|||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 482 GTGGGTTCAAGCAAAG--G-AGAGCTGTGGATTCCAACTGACACAAAGCAGTGGCAGAAC 538
Query 608 CCACCAGTTTTAACGCCAGTCAAGTCTTTGAACAGCGAACCACTCTGCTTGCAGCTTTAC 667
||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 CCACCAGTTATAACTCCCGTCAAGTCTTTGAACAGCGAGCCACTCTGCTTGCAGCTTTAC 598
Query 668 TTGGAACACCCAAGTTTGTCTGAACCACTCAACCTTGTCAACCCCGAGGATGTCGCACCC 727
||||||||||||||||||||| |||||| |||||||||||| ||| | ||| | | ||
Sbjct 599 TTGGAACACCCAAGTTTGTCTCAACCACACAACCTTGTCAAGCCC-A--ATG-C--AGCC 652
Query 728 CATGACCCATAAGTCAGATTACATGTGAGCCTCGG 762
||||| |||||||| |||| ||| ||||| ||||
Sbjct 653 CATGAGCCATAAGTAAGATAACACATGAGCTTCGG 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36407385735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5