BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16600.1

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg334934 jgi|Araly1|334934|fgenesh1_pg.C_scaffold_1001499           152    1e-36


> Ahg334934 jgi|Araly1|334934|fgenesh1_pg.C_scaffold_1001499
Length=324

 Score =  152 bits (82),  Expect = 1e-36
 Identities = 87/89 (98%), Gaps = 1/89 (1%)
 Strand=Plus/Plus

Query  134  CAGGAAATGACAGGAGTGTTCATGAAGAACTGTTTT-CTAAACTATGTTACCTACAGAAA  192
            |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct  229  CAGGAAATGACAGGAGTGTTCATGAAGAACTGTTTTTCTAAACTACGTTACCTACAGAAA  288

Query  193  CATCTTCCCCATATGGGCACTTGCAGAGT  221
            |||||||||||||||||||||||||||||
Sbjct  289  CATCTTCCCCATATGGGCACTTGCAGAGT  317


 Score = 84.2 bits (45),  Expect = 4e-16
 Identities = 45/45 (100%), Gaps = 0/45 (0%)
 Strand=Plus/Plus

Query  1    ACTAATCATCAATTTACAATTAGAAAACGGAGATTATCCTCAACA  45
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  186  ACTAATCATCAATTTACAATTAGAAAACGGAGATTATCCTCAACA  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9241559162


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5