BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16600.1 Length=265 Score E Sequences producing significant alignments: (Bits) Value Ahg334934 jgi|Araly1|334934|fgenesh1_pg.C_scaffold_1001499 152 1e-36 > Ahg334934 jgi|Araly1|334934|fgenesh1_pg.C_scaffold_1001499 Length=324 Score = 152 bits (82), Expect = 1e-36 Identities = 87/89 (98%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 134 CAGGAAATGACAGGAGTGTTCATGAAGAACTGTTTT-CTAAACTATGTTACCTACAGAAA 192 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 229 CAGGAAATGACAGGAGTGTTCATGAAGAACTGTTTTTCTAAACTACGTTACCTACAGAAA 288 Query 193 CATCTTCCCCATATGGGCACTTGCAGAGT 221 ||||||||||||||||||||||||||||| Sbjct 289 CATCTTCCCCATATGGGCACTTGCAGAGT 317 Score = 84.2 bits (45), Expect = 4e-16 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 1 ACTAATCATCAATTTACAATTAGAAAACGGAGATTATCCTCAACA 45 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 ACTAATCATCAATTTACAATTAGAAAACGGAGATTATCCTCAACA 230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9241559162 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5