BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16610.3
Length=1521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471861 jgi|Araly1|471861|fgenesh2_kg.1__1815__AT1G16610.2 1491 0.0
> Ahg471861 jgi|Araly1|471861|fgenesh2_kg.1__1815__AT1G16610.2
Length=1455
Score = 1491 bits (807), Expect = 0.0
Identities = 1051/1160 (91%), Gaps = 51/1160 (4%)
Strand=Plus/Plus
Query 85 GTCTGTCTCTCTCCTCTAATCTTTTTTATCCGCTAGGGTTTTGAAGCAAGGTTTCTCGCG 144
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCCGTCGCTCTCCTCTAATCTTTTTTATCCGCTAGGGTTTTGAAGCAAGGTTTCTCGCG 60
Query 145 ATTTTCTCGATATCTCTCGCCCATGGCGAAACCAAGTCGTGGCCGTCGTTCCCCCTCCGT 204
||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATTTTCTCG--A-GTATCGCCCATGGCGAAACCAAGTCGTGGCCGTCGTTCCCCTTCCGT 117
Query 205 GTCTGGCTCGTCATCTCGTTCCAGTTCCAGATCTCGTT--CG----GGTTCGAGCCCCTC 258
||||||||| |||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 118 GTCTGGCTCATCATCTCGTTCCAGTTCCAGATCTCGTTCCCGCTCCGGTTCTAGTCCCTC 177
Query 259 CAGGTCTATTTCCCGCTCACG----C--TCCCGTTCTAGATCGCTCTCTTCATCTTCATC 312
||||||| |||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 178 CAGGTCTCTTTCCCGCTCCCGCTCCCGGTCCCGTTCTAGATCGCTCTCTTCATCCTCATC 237
Query 313 TCCTTCGCGAAGCGTCAGTTCTGGGAGTCGCAGTCCTCCACGTCGTGGAAAAAGTCCTGC 372
|||||| || ||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 238 TCCTTCCCGGAGCGTCAGTTCTGGGAGTCGCAGTCCTCCTCCTCGTGGAAAGAGTCCTGC 297
Query 373 TGGACCTGCTAGGCGAGGTCG-----CT-CTCCTCCTCCTCCACCATCTAAAGGAGCATC 426
||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||
Sbjct 298 TGGACCTGCTAGGCGAGGTCGCTCTCCTCCTCCTCCTCCTCCACAATCTAAAAGAGCATC 357
Query 427 TTCACCTTCCAAGAAAGCTGTTCAAGAATCTCTTGTTCTCCATGTTGATTCTCTTAGCAG 486
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 TTCACCTTCTAAGAAAGCTGTTCAAGAATCTCTTGTTCTTTATGTTGATTCTCTTAGCAG 417
Query 487 GAATGTGAATGAAGCCCATCTCAAAGAAATCTTTGGCAACTTTGGTGAAGTTATACATGT 546
|||||||||||||| |||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 418 GAATGTGAATGAAGGCCATCTCAAAGAGATATTCGGCAACTTTGGTGAAGTTATACACGT 477
Query 547 CGAAATTGCGATGGATCGAGCTGTTAATCTTCCAAGAGGACATGGTTATGTTGAGTTCAA 606
||||||||| || |||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct 478 CGAAATTGCCATAGATCGATCTGTTAATCTTCCAAAAGGACATGCTTATGTTGAGTTCAA 537
Query 607 GGCAAGAGCTGATGCTGAGAAAGCTCAGCTCTACATGGATGGTGCCCAAATTGATGGAAA 666
|||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct 538 GGCAAGAGCTGATGCTGAGAAAGCGCAGCTGTTCATGGATGGTGGCCAAATTGATGGAAA 597
Query 667 GGTTGTTAAAGCAACGTTCACACTACCACCTCGTCAGAAAGTATCTTCACCCCCTAAACC 726
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 GGTTGTTAAAGCAACGTTCACACTACCACCTCGTCAGAAAGTATCTTCACCGCCTAAACC 657
Query 727 TGTCTCAGCTGCACCAAAAAGAGATGCTCCAAAATCTGATAATGCTGCTGCTGACGCTGA 786
||||||| |||||||||||||||||||||| |||||||||||||||| | ||||| ||||
Sbjct 658 TGTCTCAACTGCACCAAAAAGAGATGCTCCTAAATCTGATAATGCTGGTCCTGACACTGA 717
Query 787 GAAAGATGGTGGTCCCAGGCGCCCAAGAGAGACATCTCCTCAACGGAAAACAGGGCTTTC 846
||||||||| | ||||||||||||||||||| | | | ||||
Sbjct 718 GAAAGATGG-G--CCCAGGCGCCCAAGAGAGA------------G-A---C-----TTTC 753
Query 847 TCCGAGAAGGCGATCACCTCTACCTAGGAGAGGCTTATCACCTAGAAGGCGATCACCTGA 906
||| ||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 754 TCCAAGAAGGCGATCACCTCTACCTAGGAGAGGCTTATCACCTAGGAG---ATTTCCTGA 810
Query 907 TTCTCCCCATCGCCGGAGGCCGGGCTCTCCTATCCGCCGTCGCGGTGATACACCTCCTAG 966
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 811 TTCTCCCCATCGCCGGAGGCCGGGATCTCCTATCCGTCGTCGCGGTGATACACCTCCTAG 870
Query 967 ACGTAGGCCAGCATCACCATCTAGAGGCCGTTCTCCATCTTCTCCCCCTCCAAGACGATA 1026
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 871 GCGCAGGCCAGCATCACCATCTAGAGGCCGTTCTCCATCTTCTCCGCCTCCAAGACGAAA 930
Query 1027 TAGATCTCCTCCAAG--GGGC-TCCCCTAGAAGAATTCGTGGCAGTCCTGTTCGAAGAAG 1083
||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 931 TAGATCTCCTCCAAGCAGGGGATCCCCTAGAAGAATCCGTGGCAGTCCTGTTCGAAGACG 990
Query 1084 GTCTCCTCTTCCTCTAAGACGAAGGTCTCCACCTCCAAGGAGACTACGCAGTCCTCCCAG 1143
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GTCTCCTCCTCCTCTAAGACGAAGGTCTCCACCTCCAAGGAGACTACGCAGTCCTCCCAG 1050
Query 1144 AAGATCTCCAATCCGTAGGCGTAGCCGATCCCCAATTCGTAGGCCTGGTCGCTCTCGTTC 1203
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 AAGATCTTCAATCCGCAGGCGTAGCCGATCCCCAATTCGTAGGCCTGGTCGCTCTCGTTC 1110
Query 1204 AAGTTCCATCTCACCCCGCA 1223
||| ||||||||||||||||
Sbjct 1111 AAGGTCCATCTCACCCCGCA 1130
Score = 327 bits (177), Expect = 1e-88
Identities = 239/265 (90%), Gaps = 19/265 (7%)
Strand=Plus/Plus
Query 1257 GGGGACGAGGTCCAGCTGGGAGACGTGGGAGGTCATCTTCTTACTCTAGTTCACCAAGTC 1316
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1131 GGGGACGAGGTCCAGCTGGGAGACGTGGGAGGTCTTCTTCTTACTCTAGTTCGCCAAGTC 1190
Query 1317 CCAGAAGGATTCCTAGGAAGATTTCAAGGAGCCGCAGTCCTAAGAGGCCACTGAGAGGAA 1376
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1191 CCAGAAGGATTCCTAGGAAGATTTCAAGGAGCCGCAGTCCTAGGAGGCCACTGAGAGGAA 1250
Query 1377 AAAGAagcagcagtaacagcagcagcagcagTTCACCGCCACCACCACCTCCACCTCGTA 1436
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1251 AAAGAAGCAGCAGTAACAGCAGCAGCAGCAGTTCACCGCCACCACCACCACCACCTCGCA 1310
Query 1437 AAACTTAAAGGTGATaaaaattaaaaaaaaaaaaaaaaaaaCTTGAGTCTTGATGTAGCT 1496
||||||||| | ||||| ||||||| |||||||||| ||||||||
Sbjct 1311 AAACTTAAA----A-AAAAA--AAAAAAA------------CTTGAGTCTTCATGTAGCT 1351
Query 1497 CTCTTTCTCCATCTTTATCGTTATC 1521
||||||||||||||||||| |||||
Sbjct 1352 CTCTTTCTCCATCTTTATCTTTATC 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56944916275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5