BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16630.1
Length=2750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471862 jgi|Araly1|471862|fgenesh2_kg.1__1816__AT1G16630.1 2320 0.0
> Ahg471862 jgi|Araly1|471862|fgenesh2_kg.1__1816__AT1G16630.1
Length=2663
Score = 2320 bits (1256), Expect = 0.0
Identities = 1573/1722 (91%), Gaps = 37/1722 (2%)
Strand=Plus/Plus
Query 1025 GAAGCCGCAGAGGAAATTCTGGATGTTGATGGTGAAGAGCGTTTGGAAGCTGTAGAGAGT 1084
|||| ||||||| ||||| | ||||| |||||||| |||||||||||||| | | ||||
Sbjct 975 GAAGACGCAGAGAAAATTGTAGATGTGGATGGTGATGAGCGTTTGGAAGCAGCGGTGAGT 1034
Query 1085 GATGATgaagaagaagaagtagtagttggcgaaagcattgaagaagaagaaACTCATCAG 1144
|||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1035 GATGATGATGAAGAAG-A--AGTAGTTGGTGAAAGCATTGAAGAAGAAGAAACTCATCAG 1091
Query 1145 ATTTCAAAACAGTCTCGTTTCAGCAAGACATCCATGTTGCTTGGTTGGATTTTGGCTCTT 1204
|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1092 ATTTCAAAACTGTCTCGTTT---CAAGACATCCAAGTTGCTTGGTTGGATTTTGGCTCTT 1148
Query 1205 GGTGTGGCGTATCTGTTGTTGGTTTCTTCAACGACGTTTT-CTCAACAAACCATCACAGA 1263
|||||||||||||||||| ||||||||||||| || |||| || |||||| |||| ||||
Sbjct 1149 GGTGTGGCGTATCTGTTGGTGGTTTCTTCAACCAC-TTTTGCTGAACAAAACATCTCAGA 1207
Query 1264 TTCACCTTTCTATCAGTTTAACATCTCTCCAGAGATCATAATGTCTGCTAGCGAGAACTT 1323
||||||||||||||| ||| |||| || ||||||||||||||| |||| || | |||||
Sbjct 1208 TTCACCTTTCTATCAATTTCACATTTCACCAGAGATCATAATGGCTGCAAGGGCCAACTT 1267
Query 1324 TGAGCAGTTGGGTGCAAAGCTGAGGATGTGGGCAGAATCATCATTTGTGTATCTTGATAA 1383
||||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||
Sbjct 1268 TGAGCAGTTGGGTGCAAAGCTAAGGATGTGGGCAGAGTCATCACTTATGTATCTTGATAA 1327
Query 1384 GCTGGTCTCAAGTCTACGAGAAGAGGAGGGA-AGTGTTCCTTTTCAATTTCATAACTTGA 1442
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 1328 GCTGGTCTCAAGTCTACGAGAAGAAGAGGGATA-TGTTCCTTTTCAATTTCATAACTTGA 1386
Query 1443 CAGTTCTTTTGGAAGACAAAAGGTTGTCTGATGCTGTTTTCCAGTCAACTAGTGTTGAAA 1502
||| | |||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||
Sbjct 1387 CAGATGTTTTGGAAGACAAAAGATTGTCTGATACTGTTTTCCAGCCAACTAGTGGTGAAA 1446
Query 1503 TCATTGTTGATGGGTTCATAGTGGATAGCTTAGAAGTGGATATAGAAGAAGTGAATGTTG 1562
||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 1447 TCAGTGTTGCTGGGTTCATAGTGGATAGCTTAGAAATGGATATAGAAGAAGAGACTGTTG 1506
Query 1563 GTCATCAGGAACCTGAAGAAGAATCGGAAAACAGTGGTGAAATCAGTCTTGAAGCTGTCT 1622
||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 1507 GTCATCAGGAACCTGAAAAAGAACCGGAGAACAGTGGTGAAATCAGTTTTGAAGCTGTCT 1566
Query 1623 ACGAAGAAGATGATAATGAAGTCGAGCAGGAGAATGAAGAAGGAAAGGTAAACTTAGAAA 1682
|||||| || | | || || | | | || | |||| | |||||| || |||||
Sbjct 1567 ACGAAG-AG--GGTGAT-AA-T---G-A--AG---G-AGAA-G--AGGTAAGCTCAGAAA 1608
Query 1683 TTGTTGATGAATGTGATGAGCAGGCTGAGATCAAGATAGCTACAGATACAGAGGTGAACG 1742
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1609 TTGTTGATGAATGTGATGAGCAGGCTGAGATCAAGATAGCCACAGATACAGAGGTGAATG 1668
Query 1743 GAGGTGAAAGGTATTCAGAATCTCTTTCTGAAGAAGGACATGGTGGCCAAGAAACTGATG 1802
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1669 GAGGTGAAAGGTATTCAGAATCTCTTTCTGAAGAAGGAAATGGTGGCCAAGAAACTGATG 1728
Query 1803 TTGTTGAAGGGCAGGAAGAATATGAAGAAAATGACCAGAATAACATGGAAGAAGCTGAAT 1862
||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 1729 TTGTTGAAGGGCAGGGAGAATATGAAGAAAATGACCAGAAGAACATACAAGAAGCTGTTT 1788
Query 1863 CCGACGCACAACTGCTTGACGATGTGCAGTCTGCTGCAATCAGTAGTAACCAGCAAGAAC 1922
|||||||||| | |||||| |||||| ||||||||||||||||| || ||||||||||||
Sbjct 1789 CCGACGCACACCAGCTTGATGATGTGGAGTCTGCTGCAATCAGTGGTCACCAGCAAGAAC 1848
Query 1923 AAACCGGAGTAGCCAATGTTGAAACTGTACAAGAAGAAGAAGGTGTTGGGGAAATTGCTG 1982
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1849 AAACAGAAGTAGCCAATGTTGAAACTGTACCAGAAGAAGAAGGTGTTGGGGAAATTGCTG 1908
Query 1983 GAGGTAGCCTCAGTGTTTCAGAAGAAGCTACAGATGTTGAACATGACGGTAATGAAGTAG 2042
|| |||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 1909 GAAGTAGCCGCAGTGTTTCAGAAGAAGCTACAGATTTTGAACATGATGGTAATGATTTAA 1968
Query 2043 AAGAAGAAGAGAGTGGGTTTGGTGAAGTTGTTAATGATGCAGGTTCGGAGGACATTTTGT 2102
||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 1969 AAGAAGAAGAGAGTGGGTTTGCTGAAGTTGTTAATGATGCAGGCTCGGAGGAGATTTTGT 2028
Query 2103 TGAGTGGCCAGAAGAAAGTGTTAGTCTTGTTTTCGACTATGATGGTTATACTTGCAGCAG 2162
||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 2029 TGAGTAACCAGAAGAAAGTGATAGTCTTGTTTTCGACTCTGATGGTTCTACTTGCAGCAG 2088
Query 2163 TAGCAGCTGGTTTCCTATTAGCCAAGAAGAAGACAAAACCTGTGATGCTGCAACATGAAG 2222
||||||||||||| | ||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 2089 CAGCAGCTGGTTTCTTGTTATCCAAGAAGAAGACAAACCCTGTCATGCTGCAACATGAAG 2148
Query 2223 ATGGCGAACCAACAGCAATCTCTGCAACTAAAGTTGTCGAGCATGTGCCAGTAGAGAATC 2282
|||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2149 ATGGTGAACCAACAACAATCTCTGCAACTAAAGTTGTTGAGCATGTGCCAGTAGAGAATC 2208
Query 2283 TGATCAGAGAAAGGCTTTCTTCATTGAATTTCAAGGAAGAAGAAGAAGAAGTTGGTGATG 2342
|||| | |||||||||||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 2209 TGATAAAAGAAAGGCTTTCTTCACTGAATTTCAA-G--GAAGAAGAAGAAGTTGGTGATG 2265
Query 2343 ACAGAAAAAGAGAGGTATCATCATTCCCTTCTGAGATGAGTTTCAGCTTCAGTAAGAACA 2402
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2266 ACAGAAAAAGAGAGGTATCATCATTCCCTTCTGAGATGAGTTTCAGTTTCAGTAAGAACA 2325
Query 2403 AACCATTACACAGCTGCAGCAACAAGA-AAGATGATCTTAAAGAACATCAAAGCGGAGGA 2461
|| |||||||||||||||||||||| | || |||||||||||||| ||||||||||||||
Sbjct 2326 AATCATTACACAGCTGCAGCAACAACAGAA-ATGATCTTAAAGAATATCAAAGCGGAGGA 2384
Query 2462 GGAGGCAAGAAGAGTAATGATAGCGGTGAATCCATGGCTTCCTCTGCATCAGAGTACTCC 2521
| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 2385 GAAGGCAAGAAGAGTAATGATAGCGGCGAATCCATGGCTTCCTCGGCATCAGAATACTCC 2444
Query 2522 ATAGGTTCTGTTTCATATGGAAGTTTCACAACATATGAGAAGATACAAA-AGAGAAGTGG 2580
||||| ||||| |||||||| |||||||||||||| ||||||||||||| | ||||||||
Sbjct 2445 ATAGGCTCTGTATCATATGGGAGTTTCACAACATACGAGAAGATACAAACA-AGAAGTGG 2503
Query 2581 TCACGAAGAGAAAGAGATGATAACACCTGTGAGACGTTCAAGCAGGATCAGGAACCATCA 2640
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2504 TCACAAAGAGAAAGAGATGATAACACCTGTGAGACGTTCAAGCAGGATCAGGAACAATCA 2563
Query 2641 ACATTCTGGACAATGAGTTAGAATTAGCTTTTGACTTTATGATCTACTGATTTGTAGGAA 2700
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2564 ACATTCTGGACAATGAATTAGAATTAGCTTT-GACTTTATGATCTACTGATTTGTAGGAA 2622
Query 2701 GGCTTTTCCATCTCACTGAAGCTTAATTAGTATGTTGCTTTC 2742
| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 G-CTTTTCCATCTCACTGAAGCTTAATTAGTATGTTGCTTTC 2663
Score = 1369 bits (741), Expect = 0.0
Identities = 908/988 (92%), Gaps = 14/988 (1%)
Strand=Plus/Plus
Query 13 CATTCACAATCTTGCAGATTCTTGCATATTTTCTTTCCTTTAACGAGCGCAAAAAATCTG 72
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CATTCATAATCTTGCAGATTCTTGCATATTTTCTTTCCTTTAACGAGCGCAAAAGATCTG 60
Query 73 AGATTTGTTAAATAACCCATTCTGATTTCCGGAG-TGATTTTCATTCATGGCGTCTTCTC 131
|||||| |||||||| |||||||||| ||| || ||||||||| ||||||| |||||||
Sbjct 61 AGATTTATTAAATAATTCATTCTGATTACCGAAGTTGATTTTCAATCATGGCTTCTTCTC 120
Query 132 CAGCAAAGAACAAGAtctctgtttctccttcttctctattctcttcctcttcGCCTTCAA 191
| || | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 121 CTGCTAGGAACAAGATCTCTGTTTCTCCTTCTTCTCTTTTGTCTTCCTCTTCTCCTTCAA 180
Query 192 TGCCTTCCAGACCAAACCCTAAGCAAAGAAACTCGGAAACCGGAGATCTGATGCGTCGCA 251
|||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 181 TGCCTTCCAGACCAAACCCTAAACTCAGAAACTCGGAGACCGGAGATCTGATGCGTCGCA 240
Query 252 GTTTCCGAGGCAATCCATTTTCGGCAGATCCGTCCCGGAGAAACTCAATCGGTAGAGAAT 311
|||| |||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 241 GTTTTCGAGGCAACCCATTTCCGGCGGATTCGTCCCGGAGAAACTCAATCGGTAGAGAAT 300
Query 312 GCAGTAATCGTGTTGAGATTGGTGATAAAGAGAATCAGAACGACAAGGATCAAATC-GCT 370
||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||| | |
Sbjct 301 GCAACAATCGTGTTGAGTTTGGTGATAAAGAGAATCAGCACGACAAAGATCAAATCTG-T 359
Query 371 AATGTCGTCAAAGGTCCAACAAAAGGTTCCAAGCATTTCATGTCACCGACAATTTCAGCC 430
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AATGTCGTCAAAGTTCCAACAAAAGGTTCCAAGCATTTCATGTCACCGACAATTTCAGCC 419
Query 431 GTTTCCAAGATCAATCCATCGCCGAGGAAGAAGATCTTGTCTGATAAAAACGAAGTGTCT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTCCAAGATCAATCCATCGCCGAGGAAGAAGATCTTGTCTGATAAAAACGAAGTGTCT 479
Query 491 CGATCCTTTGACAAATCCCATCACCAGGTTCAGGTAAAGTCGTCTGTCTCGTTTTCTGAT 550
||||||||||||||| | ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 480 CGATCCTTTGACAAAACACATCATCAGGTTCAGGTGAAGTCGTCTGTCTCATTTTCTGAT 539
Query 551 GTGATAAGCATCATTGGGGAAGATAAAGATG-TAGACCAGATTTGCATCGATGAAACTAA 609
||||| |||||||||||||||||||||||| | || |||| || ||||||||||| ||
Sbjct 540 GTGATTAGCATCATTGGGGAAGATAAAGATCAT-GAGCAGACTTACATCGATGAAAAGAA 598
Query 610 GCAGCTTCGTGAAGAGGAATCACATGATATTACTGTCAGTGATTTCGATGAGATTCTTGA 669
|||||||| ||||||||| || ||||| |||||||||| |||||||||||||| | ||||
Sbjct 599 GCAGCTTCATGAAGAGGAGTCGCATGACATTACTGTCACTGATTTCGATGAGACTATTGA 658
Query 670 GAGGAAGAGTAATGATAATTCAAGCTTCAAGATCAGTCCTCTTCCTCCTTATGTTCCATG 729
|| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 659 GAACAAGAGTAATGATGATTCAAGCTTCAAGATCAGTCCTCTTCCTCCTTCTGTTCCATA 718
Query 730 CACATTTCCTGTGTTTGAGTCTCATGAAGTGGATCCAGTGGTGGCACCTTATGATCCAAA 789
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 CACATTCCCTGTGTTTGAGTCTCATGAAGTGGATCCTTTGGTGGCACCTTATGATCCAAA 778
Query 790 GAAGAATTACTTGTCACCGAGGCCTCAGTTTCTCCATTATAAGCCAAATCCAAAAATTGA 849
|||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 779 GAAGAATTACCTGTCACCGAGGCCTCAGTTTCTTCATTATAAGCCAAATCCAAGAATTGA 838
Query 850 GCATCGTTCTGATGAGTGCAAGCAGCTTGAGGAGCTTTTCATCTCTGAAAGCTCTTCTTC 909
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCATCATTTTGATGAGTGCAAGCAGCTTGAGGAGCTTTTCATCTCTGAAAGCTCTTCTTC 898
Query 910 TGACACTGATTTGTCTGCAGAACGAGAGGAGGAAGGTCAACAAGAGGAGGAAGTTGCTTC 969
||||||||||||||||||||| | || | | | |||||||||||||||||| ||||
Sbjct 899 TGACACTGATTTGTCTGCAGA--G-GA--A--A-GC-CAACAAGAGGAGGAAGTTTCTTC 949
Query 970 TCAGGAAGGTGTAGTTGCAGTAGAAGAA 997
|||||||||||||||||||| |||||||
Sbjct 950 TCAGGAAGGTGTAGTTGCAGGAGAAGAA 977
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103757827380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5