BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16640.1

Length=747
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312638 jgi|Araly1|312638|fgenesh1_pm.C_scaffold_1001418           514    4e-145


> Ahg312638 jgi|Araly1|312638|fgenesh1_pm.C_scaffold_1001418
Length=402

 Score =  514 bits (278),  Expect = 4e-145
 Identities = 344/376 (91%), Gaps = 4/376 (1%)
 Strand=Plus/Plus

Query  161  ATGGCTGACACTGGTGAGGTTCAATTTATGAAGCCTTTCATCTCAGAAAAGTCATCTAAA  220
            |||||||||||||||||||||| |||| | ||||||||||||||| ||||||||||||||
Sbjct  1    ATGGCTGACACTGGTGAGGTTCGATTTTTTAAGCCTTTCATCTCACAAAAGTCATCTAAA  60

Query  221  TCATTGGAAATCCCCTTGGGATTCAACGAATACTTCCCAGCACCATTTCCAATAACTGTG  280
            ||||||| ||| |||||||||||| | ||| ||||||| || ||||| |||||||| |||
Sbjct  61   TCATTGGCAATTCCCTTGGGATTCGAGGAACACTTCCCTGCTCCATTGCCAATAACGGTG  120

Query  281  GACCTCCTGGACTATAGTGGGAGATCTTGGACGGTTAGGA-TGAAGAAAAGAGGAGAGAA  339
            |||||||| ||||| | |||||||||||||||||||| || |||||||||||||||||||
Sbjct  121  GACCTCCTAGACTACAATGGGAGATCTTGGACGGTTA-GAGTGAAGAAAAGAGGAGAGAA  179

Query  340  AGTGTTTCTTACAGTTGGTTGGGAGAATTTTGTAAAAGATAACAATCTCGAAGATGGCAA  399
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TGTGTTTCTTACAGTTGGATGGGAGAATTTTGTAAAAGATAACAATCTCGAAGATGGCAA  239

Query  400  GTATTTGCAGTTCATCTATGACCGCGACAGGACCTTTTATGTTATCATATATGGTCATAA  459
            | ||||| | ||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct  240  GCATTTGAACTTCATCTATGACCGCAATAGGACCTTTTATGTTATCATATTTGGTCATAA  299

Query  460  CATGTGTAGCGAATATAGA-GACTTCCCTCAAGTCGCAGTAGAGGTTGATGACTATGAAA  518
            |||||||||||||| |||| | |||||||||||||| |||||||||||| ||||||||||
Sbjct  300  CATGTGTAGCGAATTTAGAAG-CTTCCCTCAAGTCGTAGTAGAGGTTGACGACTATGAAA  358

Query  519  ACGGTGAAGAAGAAGA  534
            |||||||||||| |||
Sbjct  359  ACGGTGAAGAAGTAGA  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27524746074


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5