BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16650.1
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920571 jgi|Araly1|920571|scaffold_101852.1 2512 0.0
> Ahg920571 jgi|Araly1|920571|scaffold_101852.1
Length=1613
Score = 2512 bits (1360), Expect = 0.0
Identities = 1527/1608 (95%), Gaps = 9/1608 (1%)
Strand=Plus/Plus
Query 25 GTTGCTGCTACTCAGGTCATCGGGATAATGAAGAGCAATAAGTTTTCTTGCAAAACGAGA 84
|||||||||||||| |||||||||| ||||||||||||||||| ||||||||| || |||
Sbjct 1 GTTGCTGCTACTCAAGTCATCGGGAAAATGAAGAGCAATAAGTATTCTTGCAACACAAGA 60
Query 85 GCCGAAACCCTAGAATGGATCA-CAGCCATTATCGATTTCCTTAAACCGTTTTCTTTCCT 143
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 61 GCCGAAACCCTAGAATGGATCATC-GCCATTATCGATTTCCTTAAACCTTTTTCTTTCCT 119
Query 144 AATCAATGCTCACGTTGTCAATTTCTTCAAGGATAAGCAATGGGAAGCTGTTAATGAGGA 203
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 120 AATCAATGCTCATGTTGTCAATTTCTTCAAGGATAAGCAATGGGAAGCTGTTGATGAGGT 179
Query 204 ATGGATGAGTTGCTTAAAGGATGAGAAGCCGGAAAATATTCTTCTTATTCCCTCCGGTGG 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 ATGGATGAGTTGCTTAAAGGATGAGAAGCCGGAAAATATTCTTCTTATTCCCTCCGG-GG 238
Query 264 -TGTCCAGGATCACTGGCCTGCTTCACTAAAGAAATTTGTTCACACGTTGAGGTCTCTAT 322
|||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 239 TTGTCCAGGATGACTGGCCTGCTTCACTCAAGGAATTTGTTCACACGTTGAGGTCTCTAT 298
Query 323 CGTTTCCTCGAGAGCAAGCGGATTTACAGGCGATACTCGCAGACGTGGATATGGTACCTC 382
|||||||| ||||||||||||||||||| |||||||||||||| |||||| ||||||| |
Sbjct 299 CGTTTCCTAGAGAGCAAGCGGATTTACATGCGATACTCGCAGATGTGGATTTGGTACCGC 358
Query 383 TTAGCACCGTTCTTTCACAGGGCATGAATCTTAAGAAAAAACATGAGGTTGAAGTTCTTT 442
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 359 TTAGCACCGTTCTTTCACAGGGTATGAATCTTAAGAAAAAACATGAGGTTGAAGTTCTTT 418
Query 443 CCTCTGTTGTTAGCTCAGTTGTTAAGAGTGTTGGAGCTCCTACTGTTGTTGATGTCGGTG 502
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 CCTCTGTTGTTAGCTCAGTTGTTAAGAGTGTTGGAGCTCCTACTGTCGTTGATGTCGGTG 478
Query 503 CTGGCCAGGGTTATCTAGCGCAGGTTCTCTCTTTCCAATATAAGCACTCAGTGGTTGCAA 562
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 CTGGACAGGGTTATCTAGCGCAGGTTCTTTCTTTCCAATATAAGCACTCAGTGGTTGCAA 538
Query 563 TCGATTCTTCCTCTCATCATGGAAAGGTAACAGATGCACGCGCAGCACGCATAAAAAAGC 622
| |||||||||||||||||||||| |||||||||| |||| |||||||| || | |||||
Sbjct 539 TTGATTCTTCCTCTCATCATGGAACGGTAACAGATTCACGTGCAGCACGTATCAGAAAGC 598
Query 623 ATTTTGCAGCACAGATGCGTAAATCTGGTTCAGGAAACAAGTGCCCAGATGTTCCAATGA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTTTGCAGCACAGATGCGTAAATCTGGTTCAGGAAACAAGTGCCCAGATGTTCCAATGA 658
Query 683 CGATTACATGCCGTGTTTTATCCACAGAAATGTTGAAGGCCTTGACTGATGTTCATCTGG 742
|||||||||||||||| |||||| |||| |||||||| |||||||| |||||| |||||
Sbjct 659 CGATTACATGCCGTGTATTATCCTCAGAGATGTTGAAAGCCTTGACCAATGTTCCTCTGG 718
Query 743 AGAAG-GATGAGACGGATTCTAGTGGAAGTGCATTGAATGAAGAAGGTCAAAGCAGATCA 801
|||| | ||| ||||||| || |||||||||||||||||||| | |||||||||||||
Sbjct 719 AGAAAAG-TGACACGGATTTTAATGGAAGTGCATTGAATGAAG--G-TCAAAGCAGATCA 774
Query 802 CAATCATCAAGTGATGCAAACAGATCGTGTTCACTTGTTCTTGCTGGCCTTCATGCATGT 861
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 775 CAATCAGCAAGTGATGCAAACAGATTGTGTTCACTTGTTCTTGCTGGCCTTCATGCATGT 834
Query 862 GGAGATCTATCAGTTACAATGCTAAGGACTTTTATGGAGTGTGAAGAAGTTAAAGCATTA 921
|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 835 GGGGATCTATCTGTTACAATGCTAAGGACTTTTATGGAGTGCGAAGAAGTTAAAGCAGTA 894
Query 922 GTGAGCATTGGCTGTTGTTACAACTTATTATCTGAAAAAAGTAGTGAGGATTCTTGTTCC 981
|||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 895 GTGAGCGTTGGCTGCTGTTACAACTTATTGTCTGAAAAAAGTAGTGACGATTCTTGTTCC 954
Query 982 AAATGTGGCTATCCGATGAGCGCTGGTCTCAGATCCTTGGGCTTTTCCCTTGGCAAAAAT 1041
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 955 AAATGTGGCTATCCGATGAGCGCTGGTCTCAAATCCTTGGGCTTTTCCCTTGGCAAAAAT 1014
Query 1042 GCCCGTGATTTAGCTTGTCAGAGTGCTGAGAGATGGAGCAGTTTAGGAGAAGATGCTGGT 1101
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1015 GCCCGTGATTTAGCTTGTCAGAGTGCTGAGAGATGGAGCAGCTTAGGAGAAGATGCTGGT 1074
Query 1102 CTGCAGAATTTCGAGTTGCATTCTTTTCGTGCTGCTTTCCAAATGGTTCTGTCAAAACAT 1161
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CTGCAGAATTTCCAGTTGCATTCTTTTCGTGCTGCTTTCCAAATGGTTCTGTCAAAACAC 1134
Query 1162 TATCCAGAGGTTTTGGCGACAAGTCCATCCATTGGGCGCCAAGGTAAGGCATTCCGTCGT 1221
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1135 TATCCAGAGGTTTTGGTGACAAGTCCATCCATTGGGCGCCAAGGGAAGGCATTCCGTCGT 1194
Query 1222 CAACAGCAACGAAAATCCCTTGAAACTCCAGCAGCAGTAGATACAACTAGGAAAGACACG 1281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CAACAGCAACGAAAATCCCTTGAAACTCCAGCAGCAGTAGATACAACTAGGAAAGACACT 1254
Query 1282 GTTGACAAGAAACCCATGAGGCAGACAAGCTTGAATTCCGACATGTGTTCTTCTTTTGAG 1341
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1255 GATGACAAGAAACCCATGAGGCAGACAAGCTCGAATTCCGACATGTGTTCTTCTTTCGAG 1314
Query 1342 AAGTTCTGCTTGTCAGCATTTTCCCGCTTGAATCTAGAACACCCTCGAGATCTCGACCTG 1401
|| || ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1315 AAATTTTGCCTGTCAGCATTTTCCCGCTTGAATCTAGAACATCCTCTAGATCTCGACCTG 1374
Query 1402 AATGCCACATGGAATGAAGCTGATGCATTCACTGAACTGATAGGGCCTTACTGGTCTATT 1461
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AATACCACATGGAAGGAAGCTGATGCATTCACTGAACTGATAGGGCCTTACTGGTCTATT 1434
Query 1462 CGAGCCGCATTAGGACCAGTGCTTGAGACATTGATCTTGCTTGATAGACTTATGTTCCTC 1521
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1435 CGAGCTGCATTAGGACCGGTGCTTGAGACATTGATCTTGCTTGATAGACTTATGTTTCTC 1494
Query 1522 CAAGAACAAGGAGACTCCATAAAAGTGGTTATGCTTCCCATCTTTGATCCCACCATCTCA 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CAAGAACAAGGAGACTCCATAAAAGTGGTTATGCTTCCCATCTTTGATCCCACCATCTCA 1554
Query 1582 CCTAGGAATGTGGCCATTATTGCTAGAAGACTTTGACCCTAAAGCTTA 1629
||||||||||| ||||||||||||| ||||| ||||||||||||||||
Sbjct 1555 CCTAGGAATGTCGCCATTATTGCTAAAAGACATTGACCCTAAAGCTTA 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5