BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16670.1
Length=1720
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471863 jgi|Araly1|471863|fgenesh2_kg.1__1817__AT1G16670.1 2207 0.0
Ahg889268 jgi|Araly1|889268|Al_scaffold_0007_1254 60.2 5e-08
> Ahg471863 jgi|Araly1|471863|fgenesh2_kg.1__1817__AT1G16670.1
Length=1603
Score = 2207 bits (1195), Expect = 0.0
Identities = 1365/1444 (95%), Gaps = 24/1444 (2%)
Strand=Plus/Plus
Query 13 TCAGTCTTCCATTTCAACAAATCCTTAATCTGATCTCACACACGGCGAG--ACACACATA 70
|||||||||||||||||||||||| ||||||||||||||||||||| || ||| | |||
Sbjct 1 TCAGTCTTCCATTTCAACAAATCCGTAATCTGATCTCACACACGGCAAGCCACAGATATA 60
Query 71 TAGA-ATAGAGATAGACAGCGACTCTGATCGCGTAAAGCCACATGCTTTTTATACAAACT 129
|||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 61 TAGAGAGAGAGAGAGATAGCGACTCTGATCGCGTAAAGCCACTTGCTTTTTATACCAACT 120
Query 130 CTACCCAAATAC-CAAGtttttttAATCTCCCATTTCTGAATCCTTTtctctctctctct 188
|||||||| | | |||| ||||||| || | |||||||||| | ||| | |||||||||
Sbjct 121 CTACCCAAGT-CGCAAG--TTTTTAACCTGCGATTTCTGAAT-C-TTT-T-TCTCTCTCT 173
Query 189 ctcGATTCTAGCTTCATCGCTGTTCCAAATTTAGGAAG-TTTCTGAGAAACAGGTCACAG 247
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 174 CTCGATTCTAGCTTCATCGCTGTTCCAAATTTAGG-AGTTTTCTGAGAAACAGGTCACAG 232
Query 248 GTCTGTCTTACATAGTTACATTGATGGGTTGCTCCTGGTTATCGTGTCACAGGAGA-G-- 304
||||| | | ||||||||||||||||||||||||| || |||||||||||| |
Sbjct 233 GTCTG---T-C----TTACATTGATGGGTTGCTCCTGGTTCTCATGTCACAGGAGAGGAA 284
Query 305 AAGCTACAGAAGTTGATGGAGAAATCGCAGCGATAGACAATGTAAAGATATACAAATATA 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 285 AAGCTACAGAAGTTGATGGAGAAATTGCAGCGATAGACAATGTAAAGATATACAAATATA 344
Query 365 GAGAGATACGTCAGGCCACTGATGATTTCAGTGCTGAAAATAAAATTGGAGAAGGAGGGT 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 345 GAGAGATACGTCAGGCCACTGATGATTTCAGTGCTGAAAATAAAATTGGAGAGGGAGGGT 404
Query 425 TTGGTTCTGTGTACAAGGGCTGTCTTAAAGATGGAAAACTCGCGGCTATCAAAGTCCTCT 484
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 405 TTGGTTCTGTGTACAAGGGCTGTCTTAAAGATGGAAAGCTGGCGGCTATCAAAGTCCTCT 464
Query 485 CGGCTGAGTCAAGACAAGGTGTAAAAGAATTCTTGACTGAGATCAATGTGATATCAGAAA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 CGGCTGAGTCAAGACAAGGTGTAAAAGAATTCTTGACTGAGATCAATGTGATATCAGAAA 524
Query 545 TACAGCATGAGAATTTGGTTAAGTTGTATGGATGCTGCGTGGAGGGGAATCATAGGATTC 604
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 525 TACAGCATGAGAATTTGGTGAAGTTGTATGGATGCTGCGTGGAGGGGAATCACAGGATTC 584
Query 605 TTGTTTACAATTTCCTTGAGAACAATAGTCTTGATAAGACGCTTCTAGCTGGGGGCTACA 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TTGTTTACAATTTCCTTGAGAACAATAGTCTTGATAAGACGCTTCTAGCTGGGGGCTACA 644
Query 665 CTCGTAGTGGGATACAGTTTGATTGGAGTAGTCGGGCCAATATTTGTGTTGGGGTTGCTA 724
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 CTCGGAGTGGGATACAGTTTGATTGGAGTAGTCGGGCCAATATTTGTGTTGGGGTTGCTA 704
Query 725 AAGGTCTTGCCTTTCTTCATGAGGAAGTACGCCCACACATAATTCACAGAGATATCAAAG 784
|||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 705 AAGGTCTTGCCTTTCTTCATGAAGAAGTACGGCCACACATAATCCATAGAGATATCAAAG 764
Query 785 CAAGCAACATTCTACTTGACAAATATCTATCCCCCAAGATCTCTGATTTTGGACTTGCTA 844
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 765 CAAGCAACATTCTACTCGACAAATATTTATCCCCCAAGATCTCTGATTTTGGACTCGCTA 824
Query 845 GACTTATGCCACCTAACATGACTCATGTTAGCACTCGTGTCGCGGGTACAATTGGTTATT 904
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 825 GGCTTATGCCACCTAACATGACTCATGTCAGCACTCGTGTCGCTGGTACAATTGGTTATT 884
Query 905 TAGCACCAGAGTATGCGGTTAGGGGACAGTTGACGCGTAAAGCTGATATATACAGCTTTG 964
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 885 TAGCACCAGAGTATGCTGTTAGGGGACAGTTGACGCGGAAAGCAGATATATACAGCTTTG 944
Query 965 GAGTCCTTCTGATGGAGATAGTCAGTGGAAGAAGTAACAAAAACACCCGATTACCCACTG 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 945 GAGTCCTTCTGATGGAGATAGTCAGTGGAAGAAGTAACAAAAACACCCGATTACCCACGG 1004
Query 1025 AGTATCAATATCTTCTGGAAAGAGCTTGGGAACTTTATGAGCGGAATGAGCTCGTGGATC 1084
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1005 AATATCAATATCTTCTGGAAAGAGCTTGGGAACTTTATGAGCGGAATGAGCTTGTGGATC 1064
Query 1085 TTGTTGATTCAGGGTTAAATGGAGTGTTTGACGCAGAGGAAGCTTGTCGGTACCTAAAAA 1144
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1065 TTGTTGATTCAGGTTTAAATGGAGTCTTTGATGCAGAGGAAGCTTGTCGGTACCTAAAAA 1124
Query 1145 TTGGTCTTTTGTGCACACAAGACAGTCCCAAGCTAAGACCAAGTATGTCCACCGTAGTGA 1204
| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1125 TCGGTCTTTTGTGCACACAAGACAGTCCTAAGCTAAGACCAAGTATGTCCACAGTGGTGA 1184
Query 1205 GGTTGTTAACAGGGGAGAAGGATATAGACTACAAGAAAATAAGCAGACCGGGTTTGATTT 1264
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 1185 GGTTGTTAACAGGGGAGAAGGATATAGACTACAGGAAAATAAGCAGACCAGGCTTGATTT 1244
Query 1265 CTGATTTCATGGATTTGAAAGTGAGAGGACCTGTGGCGACGAAGACAGAGCAAGTGAACA 1324
|||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 1245 CTGATTTCATGGATATGAAAGTGAGAGGACCTGTGGCAACAAAGTCAGAGCAAGTGAACA 1304
Query 1325 GACAAAACTACACAAACCCTTCTTCTTCGTCTAATGGCTCATCTAGAGATCACTCAAATG 1384
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1305 GACAAAACTACACAAACCCTTCTTCTTCGTCTAATGCCTCATCTAGAGATCACTCAAATG 1364
Query 1385 CTTACTCATCAGGGGCTTCATCAGCTAATGCTGGTAATACATTCAGCAGTACCATATAGA 1444
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1365 CTTACTCATCAGGGGCTTCATCAGCCAATGCTGGTAATACATTCAGCAGTACCATTTAGA 1424
Query 1445 AAGA 1448
||||
Sbjct 1425 AAGA 1428
Score = 159 bits (86), Expect = 5e-38
Identities = 106/115 (92%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 1604 CTGCAGAAAAGGCGGTCTCTGCCTCGCTCTTGTTCAAGTCAGTCTTCAGTTGCAAACAGA 1663
|||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 1493 CTGCAGAAAAGGCGGTCTCTGCCTTGCTGTTGTTCAAGTC-GTCTTCAGTTGCAAACAGA 1551
Query 1664 GAGATTTGAGTGTTGTATGTATGTATGTAAATATATTTATAGATTGAAGTTGAAT 1718
||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 1552 GAGATTTGAGTGT---ATGTATGTAAATATATATATTTATAGATTGAAGTTGAAT 1603
> Ahg889268 jgi|Araly1|889268|Al_scaffold_0007_1254
Length=1878
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 766 ATTCACAGAGATATCAAAGCAAGCAACATTCT 797
||||||||||||||||||||||||||||||||
Sbjct 1351 ATTCACAGAGATATCAAAGCAAGCAACATTCT 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64524875030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5