BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16690.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471865 jgi|Araly1|471865|fgenesh2_kg.1__1819__AT1G16690.1 2388 0.0
Ahg477071 jgi|Araly1|477071|fgenesh2_kg.2__2201__AT1G79020.1 968 0.0
> Ahg471865 jgi|Araly1|471865|fgenesh2_kg.1__1819__AT1G16690.1
Length=1781
Score = 2388 bits (1293), Expect = 0.0
Identities = 1561/1683 (93%), Gaps = 48/1683 (3%)
Strand=Plus/Plus
Query 100 CAATTGTCGAGACTAGAGAGGA-ATTTTCAATTCGTTTTCGGACATTTATAAAGCTTCTC 158
|||||||| ||||| ||| || |||||||||||| |||| ||||||||||||||||||
Sbjct 68 CAATTGTCCAGACTCGAG-TGAGATTTTCAATTCGCTTTCCGACATTTATAAAGCTTCTA 126
Query 159 TCTTCCTTGAA-TTTCAACG--T-T-----TCTGGGTAAGCTCGAAAAAGAGAAC-AGAC 208
|||||| | || |||||||| | | ||||||||| ||||||||||||||| | ||
Sbjct 127 TCTTCC-TCAAGTTTCAACGTTTCTCGGAATCTGGGTAATCTCGAAAAAGAGAACTAAAC 185
Query 209 CCCGA--TTTTTGATTAGCCGGTACGATTCGTCC-G--GAG-G----AA---TAGAAAAC 255
||| | ||||||||||||| ||||||||| ||| | ||| | || |||||||
Sbjct 186 CCC-ATTTTTTTGATTAGCCTGTACGATTCTTCCGGAAGAGAGAACAAACCCTAGAAAAT 244
Query 256 TCGCCTTATTTTACTTTCTTCCTGTCTCA---TAG----GAG-C-AAAGCGTTGATGAGG 306
|||||||| | |||||||||||||||||| ||| || | |||||||||||||||
Sbjct 245 TCGCCTTACTCTACTTTCTTCCTGTCTCATTGTAGCAATTAGACGAAAGCGTTGATGAGG 304
Query 307 TCTTTCGTACTCAAAATAGCTATATAGATATTGTTTAGTAGAGAGG-AGGAAGATAGTGA 365
|| ||| ||||| |||| |||||||||||||||||||||||||||| || ||||| ||||
Sbjct 305 TC-TTCCTACTC-AAATTGCTATATAGATATTGTTTAGTAGAGAGGAAGTAAGATTGTGA 362
Query 366 AATGAGTAGGCTATCTTTTCGACCCCGTCCACTGGACATACACAAGAAGCTTCCAATTTT 425
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 363 AATGAGTAGGCTATCTTTTCGACCCCGTCCATTGGACATACACAAGAAGCTTCCAATTTT 422
Query 426 AAAGTCTTTTAAAGACTTTGAAGACGAAGATAATCCTTCTTCCATTACTAGAAACTCTCA 485
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 423 AAAGTCCTTTAAAGACTTTGAAGATGAAGAGAATCCTTCTTCCATTACTAGAAATTCTCA 482
Query 486 GTTGCTGCGTATATCTGCCGTAGAGGTTGTTGACAATGAGGTGCAGCCTCCAGTGCCTAG 545
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GTTGCTGCGTATATCCGCCGTAGAGGTTGTTGACAATGAGGTGCAGCCTCCAGTGCCTAG 542
Query 546 TAAGAAACTGATTTCGGAAATCCCAACACCTCAGTATCTTGTTGTTGATACATATGAAAG 605
|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 543 TAAGAAACTGGTTTCAGAAATACCAACACCTCAGTATCTTGTTGTTGATACATATGAAAG 602
Query 606 AGACTACTCTAGGACTTTTAATCAGCCTGCTTCATATTTACGCGCTAGAGGAGCTCGGGC 665
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 603 AGACTACTCTAGGACTTTTAATCAGCCTGCCTCGTATTTACGCGCTAGAGGAGCTCGGGC 662
Query 666 TGAGCTTGGAGAATTTGTGGAGTATGATCTTGACAATGACGATGATGACTGGCTTTATGA 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGAGCTTGGAGAATTTGTGGAGTATGATCTTGACAATGACGATGATGACTGGCTTTATGA 722
Query 726 GTATAATAAGGAGACAATGATTCTCTCACCTGAAATGCTTGAGATCGTTATATTTAAACT 785
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 723 GTATAATAAGGAGACAATGATTCTCTCACCTGAAATGCTTGAGATCATTATATTTAAGCT 782
Query 786 AGAGGTCTTGGATCATAAGGCGCGGGAAAGAGCTGGAGTTATTACTCCTACCCTTGGTTT 845
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CGAGGTATTGGATCATAAGGCGCGGGAAAGAGCTGGAGTTATTACTCCTACCCTTGGTTT 842
Query 846 GCCAGTTCCAGTGCTTTTGCAGCCTGATGCTGCTGGTGAGGC----GC--TGAAATATTT 899
||||||||||||||||||||||| |||||||||| ||||||| || || ||| |||
Sbjct 843 GCCAGTTCCAGTGCTTTTGCAGCTTGATGCTGCTAGTGAGGCGTTGGCGTTGCAATCTTT 902
Query 900 GTCCATCAAATATGGAGTTTTCCACGCTATATACAGTTATTGGAAAAATAAGCGTGAAAT 959
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 903 GCCCATCAAATATGGAGTTTTCCAGGCTATATACAGTTATTGGAAAAATAAGCGTGAAAG 962
Query 960 ATGGCAGAAGCCTATCTTGCGGCGTTTACAGCCTCCACCACCGGTCAATGATACCAATCC 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATGGCAGAAGCCTATCTTGCGGCGTTTACAGCCTCCACCACCGGTCAATGATACCAATCC 1022
Query 1020 GTACAATGTGTTTAGGCCACGGGAGAAAGCTCATAGACTACACGCAAGAAGAATGCAGCA 1079
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1023 GTACAATGTGTTTAGGCCACGGGAGAAAGCTCATAGACTACACACAAGAAGGATGCAGCG 1082
Query 1080 GAGAGAAAACAATGCGCAGTCATTTGAGAAGCTGCGACAGGTCAGGCGCAATCTTGACCA 1139
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1083 GAGAGAAAACAATGCACAGTCATTTGAAAAGCTTCGACAGGTCAGGCGCAATCTTGACCA 1142
Query 1140 AGCAAAGACCATTCTAGAAGCTCTTATTAAGAGAGAAGAGAAAAAGAGGGATTTCATGGC 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 AGCAAAGACCATTCTAGAAGCTCTTATTAAGAGAGAAGAGAAAAAGAGGGATTTCATGGC 1202
Query 1200 GAGTGAGGTTAGCCTTCAGAGAATCCAACTGAAATATAAGAATGAAACCGAACTTTTGGA 1259
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1203 GAGTGAGGTTAGCCTTCAGAGAATCCAACTCAAATATAAGAATGAAACCGAGCTTTTGGA 1262
Query 1260 AGATAGTTTGGCTCTGGCTGGGTTTCCACTCTCTACAGCTTACAGATTTGGCTCAAGCGA 1319
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1263 AGATAGTTTGGCGCTGGCTGGGTTTCCACTCTCTACATCTTACAGATTTGGCTCAAGCGA 1322
Query 1320 AGATGAATTCATGGACTCCGATGACCCGACCACCACCCAAACATGTACAAGGCCTTCCTT 1379
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1323 AGATGAATTCATGGACTCCGATGACCCTACCACCACCCAAACATGTACAAGGCCTTCCTT 1382
Query 1380 TACCCCTCATCGTCGTTTCACCGACTCAAACCTCGCTCGAGCTCAAGCCGGGAGCATAAA 1439
||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 1383 TACCCCTCATCCTCGTTTCACCGACTCAAATCTCGCTCGAGCTCAAGCTGGGCGCATAAA 1442
Query 1440 GCAAGAGGCGAGAAGACTTGGATGGCTCCACAAACTGAATCCTAATGAGCCAGTTATGCT 1499
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GCAAGAGGCGAGAAGACTCGGTTGGCTCCACAAACTGAATCCTAATGAGCCAGTTATGCT 1502
Query 1500 GTTCACGAAAGCATTGGTCCCCGATAAACTGGCTGCTGCGGGAATCATCCCTCCATCAGA 1559
|||||| ||| || |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1503 GTTCACAAAACCACTGGTCCCCGATAAAATGGCTGCTGTGGGAATCATCCCTCCATCAGA 1562
Query 1560 TGCAAGAAGTGGAAGAGCTCGGTTTCAAGGAAGAATGGGTAGAGGCGGTCGGATTGTATT 1619
||||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||
Sbjct 1563 TGCAAGAAGCGGAAGAGCTCGGTTTCAAGGAAGAATTGGTCGAGGTGGTCGGATTGTATT 1622
Query 1620 TGATAGATGGAATCCTCTAAACCAAGCCCACATTAACTGTGGCAACACTCTCTACATAGC 1679
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1623 TGATAGATGGAATCCTCTAAACCAAGCCCACATGAACTGTGGGAACACTTTCTACATAGC 1682
Query 1680 ACCATAACATCTCAACTAGTTTTCTTCTTCTT-CATTGTAAAGAGTTATCCCCGTTAGTT 1738
|||||||||||||||||| ||| ||||||||| | | ||||| |||| ||||||||||||
Sbjct 1683 ACCATAACATCTCAACTAATTT-CTTCTTCTTTC-TCGTAAAAAGTTTTCCCCGTTAGTT 1740
Query 1739 CCT 1741
|||
Sbjct 1741 CCT 1743
> Ahg477071 jgi|Araly1|477071|fgenesh2_kg.2__2201__AT1G79020.1
Length=1611
Score = 968 bits (524), Expect = 0.0
Identities = 1094/1363 (80%), Gaps = 64/1363 (5%)
Strand=Plus/Plus
Query 343 AGTAG-AGAG-GAGGAAGATA-GTGAAATGAGTAGGCTATCTTTTCGACCCCGTCCACTG 399
||||| | || |||||||| | |||| ||||||||||| ||||| || || || ||| ||
Sbjct 146 AGTAGAATAGTGAGGAAGA-AGGTGATATGAGTAGGCTCTCTTTCCGGCCACGGCCATTG 204
Query 400 GACATACACAAGAAGCTTCCAATTTTAAAGTCTTTTAAAGACTTTGAAGACGAAGATA-A 458
||||| || ||||||||||| |||||||| || |||||||||||||||||||| || | |
Sbjct 205 GACATTCATAAGAAGCTTCCCATTTTAAAATCGTTTAAAGACTTTGAAGACGATGAGACA 264
Query 459 TCCTTCTTCCATTACTAGAAACTCTCAGTTGCTGCGTATATCTGCCGTAGAGGTTGTTGA 518
|| |||| | |||||||| ||||||||||| |||||| || |||| || | |||||
Sbjct 265 -CCAACTTCTACCACTAGAAATTCTCAGTTGCTTCGTATAGCTTCCGTCGA-G--GTTGA 320
Query 519 CAATGAGGTGCAGCCTCCAGTGCCTAGTAAGAAACTGATTTCGGAAATCCCAACACCTCA 578
|||||||||| | |||||||||| || ||||||| | ||| ||||| |||||||||||
Sbjct 321 CAATGAGGTG--G-CTCCAGTGCCAAGCAAGAAACCGGCTTCAGAAATACCAACACCTCA 377
Query 579 GTATCTTGTTGTTGATACATATGAAAGAGACTACTCTAGGACTTTTAATCAGCCTGCTTC 638
| | || |||| |||||||||||||| || || ||| |||||| ||||||||||||
Sbjct 378 ATTTGTTATTGTGGATACATATGAAAGGGATTATTCTCCTACTTTTGGTCAGCCTGCTTC 437
Query 639 ATATTTACGCGCTAGAGGAGCTCGGGCTGAGCTTGGAGAATTTGTGGAGTATGATCTTGA 698
||| |||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 438 TTATCTACGAGCAAGAGGAGCTCGGTCTGAGCTTGGAGAATTTGTGGAGTATGATCTTGA 497
Query 699 CAATGACGATGATGACTGGCTTTATGAGTATAATAAGGAGAC-AATGATTCTCTC-ACCT 756
|||||| ||||| |||||||||||||||| | ||||||| | || || || || ||||
Sbjct 498 CAATGAGGATGAAGACTGGCTTTATGAGTTTGATAAGGATAAGAAAGAA-CT-TCCACCT 555
Query 757 GAAATGCTTGAGATCGTTATATTTAAACTAGAGGTCTTGGATCATAAGGCGCGGGAAAGA 816
|||| |||||||| |||||| |||||||||||||| |||||||| ||| |||||||||||
Sbjct 556 GAAAAGCTTGAGAGCGTTATTTTTAAACTAGAGGTGTTGGATCACAAGACGCGGGAAAGA 615
Query 817 GCTGGAGTTATTACTCCTACCCTTGGTT-TGCCAGTTCCAGTGCTTTTGCAGCCTGATGC 875
|||||||||||||| ||||| || |||| | || ||||| |||||||||||| ||||||
Sbjct 616 GCTGGAGTTATTACACCTACTCTCGGTTCT-CCGGTTCCTGTGCTTTTGCAGTTTGATGC 674
Query 876 TGCTGGTGAGGCGCTGAAAT-ATTTGTCCATCAAATATGGAGTTTTCCACGCTATATACA 934
||||| || || ||| | | | | |||||| || |||||| | ||||| || || | ||
Sbjct 675 TGCTGCTGCTGCACTGCATTTACT-GTCCATTAATTATGGAATCTTCCAGGCGATCTTCA 733
Query 935 GTTATTGGAAA-AATAAGCGTGAAATATGGCAGAAGCCTATCTTGCGGCGTTTACAGCCT 993
|| |||||| || ||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 734 ACTACTGGAAAGAA-AAGCGCAAAAGATGGCAGAAGCCTATCTTGCGGCGCTTACAGCCT 792
Query 994 CCACCACCGGTCAATGATACCAATCCGTACAATGTGTTTAGGCCACGGGAGAAAGCTCAT 1053
|| |||||||| ||||| |||||||| || ||||||||||||||| ||||||||| |||
Sbjct 793 CCCCCACCGGTTAATGACACCAATCCCTATAATGTGTTTAGGCCAAGGGAGAAAGTTCAC 852
Query 1054 AGACTACACGCAAGAAGAATGCAGCAG-AGAGAAAACAATGCGCAGTCATTTGAGAAGCT 1112
||||| ||| ||||||| |||||| || ||||||||||||| |||||||||||| |||||
Sbjct 853 AGACTCCACACAAGAAGGATGCAG-AGGAGAGAAAACAATGTGCAGTCATTTGAAAAGCT 911
Query 1113 GCGACAGGTCAGGCGCAATCTTGACCAAGCAAAGACCATTCTAGAAGCTCTTATTAAGAG 1172
|||||||| || ||||| || | |||||| |||||||||| || ||||| ||||||||
Sbjct 912 TCGACAGGTTAGACGCAACCTAGGGCAAGCACAGACCATTCTGGAGGCTCTCATTAAGAG 971
Query 1173 AGAAGAGAAAAAGAGGGATTTCATGG-CGAGTGAGGTTAGCCTTCAGAGAATCCAACTGA 1231
||||||||| ||||||||| |||||| | |||||||||||||| ||||||||||||||
Sbjct 972 AGAAGAGAAGAAGAGGGATGTCATGGAC-AGTGAGGTTAGCCTCCAGAGAATCCAACTCC 1030
Query 1232 AATATAAGAATGAAACCGAACTTTTGGAAGATAGTTTGGCTCTGGCTGGGTTTCCACTCT 1291
|||| | | ||||||| || || ||||||||||| ||||||||| |||| ||||||| |
Sbjct 1031 AATACAGGCATGAAACAGAGCTCTTGGAAGATAGCTTGGCTCTGCCTGGATTTCCACCCA 1090
Query 1292 CTACAGC-T--TACAGATTTGGCTCAAGCGAAGATGAATTCATGGACTCCGATGACC-CG 1347
||||| | | |||| ||||||||||||||| |||||| | |||||||| ||||| | |
Sbjct 1091 CTACAACATCATACAAATTTGGCTCAAGCGATGATGAACTGATGGACTCAGATGATCAC- 1149
Query 1348 ACCACCACCCAAACATGTACAAGGCCTTCCTTTACCCCTCAT-CGTCGTTTCACCGACTC 1406
|| | |||| | | ||||| ||| || ||| |||| || | |||||||||| |||
Sbjct 1150 ACAAGTACCCGTGTACGCACAAGACCTGCCGTTATCCCTAATTC-TCGTTTCACCAACTT 1208
Query 1407 AAACCTCGC-T-CGAGCTCAAGCCGGGAG-CAT-AAAGCAAGA-G---GC-GA-GA-AG- 1454
||| || | | | | ||||| |||| || ||| ||| ||||| | | || || ||
Sbjct 1209 AAATCT-GAATGC-ATCTCAACCCGG-AGGCATCAAA-CAAGAAGTTAGAAGACGACAGT 1264
Query 1455 ---A-CTTGGATGGCTCCACAAACTGAATCCTAATGAGCCAGTTATGCTGTTCACGAAAG 1510
| | |||||||| |||| |||| |||||||||| ||||| |||||||| || |||
Sbjct 1265 CGCAGCACGGATGGCTTCACAGACTGGATCCTAATGAACCAGTCATGCTGTTTACAAAAC 1324
Query 1511 CATTGGTCCCCGATAAACTGGCTGCTGC-GGGAATCATCCCTCCATCAGATGCAAGAAGT 1569
| |||| |||||||||||||| ||||| |||| | ||| |||| || | | | |
Sbjct 1325 CGCTGGTTCCCGATAAACTGGCAGCTGCAGGGATTGTTCC-TCCAGCACCGG-ATTCA-T 1381
Query 1570 GGA-AGAGCTCGGTTTCAAGGAAGAAT-GGGTAGAGGCGGTCGGATTGTATTTGATAGAT 1627
| | || ||||||||| || || || ||| | || || || || |||| |||||||
Sbjct 1382 CGCCA-AG-TCGGTTTCAGGGGAGGATTGGGC-GTGGTGGCCGAATAATATTCGATAGAT 1438
Query 1628 GGAATCCTCTAAACCAAGCCCACATTAACTGTGGCAACACTCT 1670
|||||||| | | ||| | ||||||||||| || || |||||
Sbjct 1439 GGAATCCTTTGATGCAATCTCACATTAACTGCGG-AA-ACTCT 1479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5