BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16700.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471866 jgi|Araly1|471866|fgenesh2_kg.1__1820__AT1G16700.1 1616 0.0
Ahg927319 jgi|Araly1|927319|scaffold_202880.1 896 0.0
Ahg899771 jgi|Araly1|899771|Al_scaffold_0004_421 220 1e-56
> Ahg471866 jgi|Araly1|471866|fgenesh2_kg.1__1820__AT1G16700.1
Length=1004
Score = 1616 bits (875), Expect = 0.0
Identities = 971/1015 (96%), Gaps = 15/1015 (1%)
Strand=Plus/Plus
Query 29 TTCCGACGACCGTGAATCACCAGCAAAGGATTCGTGTCAATGTTCTTGTGAGATCGAACT 88
|||||| || |||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 1 TTCCGATGATCGTGAATCACTAGCAAAGGATTC--G----TGTTCTTGTGAGATCGAACT 54
Query 89 TTCTCTGGGTTCGTGCAGAAGCTTTGCTTTTTTGAGTATCGCGTTTAAGGCACATCGAAG 148
|||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||
Sbjct 55 TTCTCTGGGTTCGTGCAGAAGC-TTACTTCTTTGAGTATCGTGTTTAAGGCACATCGAAG 113
Query 149 AAGAGAGACCCTAATTTGATATTTTGAGTTCTATCGATGGCTTCGCTACTAGCTCGCAGG 208
|||| |||||| ||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 114 AAGAAAGACCCAAATTTGATATTCGGAGTTCTATCGATGGCTTCGTTACTGGCTCGCAGG 173
Query 209 TCGTTCAGTGCTCTCCGAGCTCGACATCTCGCTTTTTCAGGGCAAGGTTTACAGGGATCT 268
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 174 TCGTTCAGTGCTCTCCGAGCTCGACAACTCGCTTTTTCAGGGCAAGGTTTACAGGGATCT 233
Query 269 CATCTCTGTGGGCTACAGTCCCGTGCTATATCTTATGGAAGCAACAAAGATGATGAAGAA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CATCTCTGTGGGCTACAGTCCCGTGCTATATCTTATGGAAGCAACAAAGATGATGAAGAA 293
Query 329 GCTGAGCAGCTTGCTAAAGAGATCTCCAAGGACTGGAGTACTGTCTTTGAACGGAGCATG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GCTGAGCAGCTTGCTAAAGAGATCTCCAAGGACTGGAGTACTGTCTTTGAACGGAGCATG 353
Query 389 AACACCCTATTTCTCACTGAAATGGTCAGGGGTTTGTCACTGACCCTCAAGTACTTCTTT 448
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 AACACCCTATTTCTCACTGAAATGGTCAGGGGTTTGTCGCTGACCCTCAAGTACTTCTTT 413
Query 449 GATCCAAAAGTTACAATCAATTATCCTTTTGAGAAGGGTCCATTGAGCCCTCGTTTCCGT 508
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 414 GATCCAAAAGTTACAATCAATTATCCTTTTGAGAAGGGTCCATTGAGCCCTCGCTTCCGT 473
Query 509 GGTGAACACGCTCTTCGAAGGTATCCAACTGGGGAAGAACGCTGCATTGCCTGCAAACTC 568
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GGTGAACATGCTCTTCGAAGGTATCCAACTGGGGAAGAACGCTGCATTGCCTGCAAACTC 533
Query 569 TGCGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAGGAGCGGGAAGATGGA 628
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGTGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAGGAGCGGGAAGATGGA 593
Query 629 AGCCGCAGAACCACTAGGTATGATATCGACATGACGAAA-TGCATCTATTGTGGTTTCTG 687
||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 594 AGCCGCAGAACCACTAGGTATGATATCGACATGAC-AAAGTGCATCTACTGTGGTTTCTG 652
Query 688 CCAAGAAGCTTGCCCTGTTGATGCAATCGTGGAAGGACCAAACTTTGAGTTTGCAACCGA 747
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 653 CCAAGAAGCTTGCCCTGTTGATGCAATTGTCGAAGGACCAAACTTTGAGTTTGCAACTGA 712
Query 748 GACACATGAGGAACTTCTGTATGACAAAGAGAAGCTTCTTGAGAATGGAGATAGGTGGGA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GACACATGAGGAACTTCTGTATGACAAAGAGAAGCTTCTTGAGAATGGAGATAGGTGGGA 772
Query 808 GACAGAGATTGCAGAGAATCTGAGGTCGGAGAGCCTCTACCGCTGAATATTGATCCGAAA 867
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GACAGAGATTGCAGAGAATCTGAGGTCGGAGAGCCTCTACCGCTGAATATTGATCCGAAT 832
Query 868 ATGCCTTTTGCCTAATTCTTAAGGAAACGTTTTCGTTTGCTTCTGTTACAAATAAAGATG 927
||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 833 ATGTCTTTTGTCTAATTCTTCAGGAAACGTTTTCGTTTGCTTCTGTTACAAATAAAGATG 892
Query 928 CTTCAGCCTTTGCACTGTTATTGCTA-TCTGTATTTCTTGAGTTCATACCGATGGCAAAA 986
||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 893 CTTCAGCTTTTGCACTGTTATTG-TAATCTGTATTGCTTGAGTTCATACCGATGGCAAAA 951
Query 987 TCAAA-TTTGGCTTTGTTTCCGGTT-TGAGCTGGACCGTGCGGTAAATGGATTAT 1039
||||| ||||| ||||||||||||| | |||||||||||| ||||||||| ||||
Sbjct 952 TCAAACTTTGG-TTTGTTTCCGGTTGT-AGCTGGACCGTGAGGTAAATGGTTTAT 1004
> Ahg927319 jgi|Araly1|927319|scaffold_202880.1
Length=712
Score = 896 bits (485), Expect = 0.0
Identities = 611/674 (91%), Gaps = 0/674 (0%)
Strand=Plus/Plus
Query 181 ATCGATGGCTTCGCTACTAGCTCGCAGGTCGTTCAGTGCTCTCCGAGCTCGACATCTCGC 240
||| ||||| ||| | | ||||||||||| | | | |||| || |||||||||||||
Sbjct 18 ATCAATGGCGTCGATTTTGGCTCGCAGGTCACTGAATACTCTACGTGCTCGACATCTCGT 77
Query 241 TTTTTCAGGGCAAGGTTTACAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATC 300
|||||||||||||| ||| |||||||||||||| | | | || |||||||||| ||||||
Sbjct 78 TTTTTCAGGGCAAGCTTTGCAGGGATCTCATCTTTCTAGACTGCAGTCCCGTGGTATATC 137
Query 301 TTATGGAAGCAACAAAGATGATGAAGAAGCTGAGCAGCTTGCTAAAGAGATCTCCAAGGA 360
|||||| ||||||||||||||||||||||| ||||| ||| |||| || |||||||||||
Sbjct 138 TTATGGCAGCAACAAAGATGATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGA 197
Query 361 CTGGAGTACTGTCTTTGAACGGAGCATGAACACCCTATTTCTCACTGAAATGGTCAGGGG 420
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| | ||
Sbjct 198 CTGGAATACTGTCTTTGAACGGAGCATAAACACCCTCTTTCTCACTGAAATGGTCCGCGG 257
Query 421 TTTGTCACTGACCCTCAAGTACTTCTTTGATCCAAAAGTTACAATCAATTATCCTTTTGA 480
|||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 258 TTTGTCGCTGACCCTCAAGTACTTCTTTGATCCCAAAGTTACTATCAATTATCCATTTGA 317
Query 481 GAAGGGTCCATTGAGCCCTCGTTTCCGTGGTGAACACGCTCTTCGAAGGTATCCAACTGG 540
|||||||||| |||||||||| |||||||||||||| |||||||| || ||||| || ||
Sbjct 318 GAAGGGTCCACTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGCAGATATCCTACCGG 377
Query 541 GGAAGAACGCTGCATTGCCTGCAAACTCTGCGAAGCTGTATGTCCAGCTCAAGCAATCAC 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 378 GGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCAC 437
Query 601 AATAGAGGCAGAGGAGCGGGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACAT 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AATAGAGGCAGAGGAGAGGGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACAT 497
Query 661 GACGAAATGCATCTATTGTGGTTTCTGCCAAGAAGCTTGCCCTGTTGATGCAATCGTGGA 720
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 498 GACAAAATGCATCTACTGTGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTCGA 557
Query 721 AGGACCAAACTTTGAGTTTGCAACCGAGACACATGAGGAACTTCTGTATGACAAAGAGAA 780
|||||| |||||||| || ||||| |||||||| ||||||||||| ||||||||||| ||
Sbjct 558 AGGACCTAACTTTGAATTCGCAACTGAGACACACGAGGAACTTCTCTATGACAAAGAAAA 617
Query 781 GCTTCTTGAGAATGGAGATAGGTGGGAGACAGAGATTGCAGAGAATCTGAGGTCGGAGAG 840
||||||||||||||||||| | |||||||| ||||| || ||||||||||||||||||||
Sbjct 618 GCTTCTTGAGAATGGAGATCGATGGGAGACTGAGATCGCTGAGAATCTGAGGTCGGAGAG 677
Query 841 CCTCTACCGCTGAA 854
|||||||||||||
Sbjct 678 TCTCTACCGCTGAA 691
> Ahg899771 jgi|Araly1|899771|Al_scaffold_0004_421
Length=168
Score = 220 bits (119), Expect = 1e-56
Identities = 127/131 (97%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 241 TTTTTCAGGGCAAGGTTTACAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATC 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TTTTTCAGGGCAAGCCTTACAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATC 62
Query 301 TTATGGAAGCAACAAAGATGATGAAGAAGCTGAGCAGCTTGCTAAAGAGATCTCCAAGGA 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 63 TTATGGAAGCAACAAAGATGATGAAGAAGCTGAGCAACTTGCTAAAGAGATCTCCAAGGA 122
Query 361 CTGGAGTACTG 371
||||||||||
Sbjct 123 TTGGAGTACTG 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5