BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16705.2

Length=790
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg312643 jgi|Araly1|312643|fgenesh1_pm.C_scaffold_1001423           289    3e-77


> Ahg312643 jgi|Araly1|312643|fgenesh1_pm.C_scaffold_1001423
Length=606

 Score =  289 bits (156),  Expect = 3e-77
 Identities = 203/225 (90%), Gaps = 5/225 (2%)
 Strand=Plus/Plus

Query  171  ATGGACAATGATGTTTTCCAGATTCGCCGGTCCATGCGAGACGCTATCTTCGTCCAGTTA  230
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct  1    ATGGACAATGATGTTTTCCAAATTCGCCGGTCCATGCGAGATGCTATCTTCGTCCTGTTA  60

Query  231  GAGAAGCGAAACCCACTTCCGAATGATGATGCATCAAAGGGGAAGCATTTAGATGC---T  287
            ||||||||||| |||||||||| |||||||||||||||||  ||   |||||||||   |
Sbjct  61   GAGAAGCGAAATCCACTTCCGACTGATGATGCATCAAAGGCCAAATGTTTAGATGCTGTT  120

Query  288  GCTAAACGCTTAGAGGAAG-GACTTTTTAAAATGGCTATGACAAAGGAGGAATACTTGAA  346
            |||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTAAACGCTTAGAGG-AGCTAATTTTTAAAATGGCTATGACAAAGGAGGAATACTTGAA  179

Query  347  CCCGTCAACTCTTGAATCTCGCTTGACAAGCTTAATAAAAGGCAG  391
            ||||||||| || ||||||||||||| ||||||||||  ||||||
Sbjct  180  CCCGTCAACCCTCGAATCTCGCTTGAAAAGCTTAATATTAGGCAG  224


 Score =  135 bits (73),  Expect = 4e-31
 Identities = 104/118 (88%), Gaps = 6/118 (5%)
 Strand=Plus/Plus

Query  576  TCTTTTTACGACTTGTTTGGAAACGTTTTCATTGCTTATGTTACAAGGAAAAGATGATAA  635
            ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  252  TCTTTCTCCGACTTGTTTGGAAACGTTTTCATTGCTTATGTTACAAGGAAAAGATGATAA  311

Query  636  CATATACAATACTAACG-CTTCTG-C--CTTCTCCATTGCTACTGTATTGCTAATTGT  689
            ||||| |||||| | |  || | | |  ||||| ||||||||||||||||||| ||||
Sbjct  312  CATATTCAATAC-A-CTACTACAGGCAGCTTCTGCATTGCTACTGTATTGCTACTTGT  367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29164031505


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5