BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16730.1
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334946 jgi|Araly1|334946|fgenesh1_pg.C_scaffold_1001511 839 0.0
> Ahg334946 jgi|Araly1|334946|fgenesh1_pg.C_scaffold_1001511
Length=624
Score = 839 bits (454), Expect = 0.0
Identities = 570/624 (91%), Gaps = 15/624 (2%)
Strand=Plus/Plus
Query 1 ATGGAAAATCATCACCGAATATCCGCCACAAAATACAACGGCGAAGCAGTGTCGGACGAT 60
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |
Sbjct 1 ATGGAAAATCATCACCGAACCTCCGCCACAAAATCCGACGGCGAAGCAGTGTCGGACGGT 60
Query 61 GTGGGCCAGGGGAAGCTATATTCTCCAAACCACGCGATCAAAATCTCTCCAGAATCCGAC 120
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 61 GTGGGCCAGGGGAAGCTATATTCTCCGAACCACGCGATCAAAATCGCTCCAAAATCCGAC 120
Query 121 GAAAACGTGGGCCAAGGGAACCTCTACTCTCCTGACCACGCGATCAAAATCGCAACGAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAACGTGGGCCAAGGGAACCTCTACTCTCCTGACCACGCGATCAAAATCGCAACGAAC 180
Query 181 CCTGATTCCGTGGATTCCTCATCAGAGGAAGAAGAAGGAGAGAAGCAGAGGAAGACGATC 240
||| |||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 181 CCTAATTCTGTGGATTCATCATCAGAGGAAGAAGAAGGGGAGAAACAGAGGAAGACGATG 240
Query 241 ATGTTGGGGCTGAAGAATCTTGCGGCGGTTAAGGATAAAGTGTTAGAAAAACTATCGGCT 300
||||||||||||||||||||||| | |||||||||||||| || || |||||| |||||
Sbjct 241 ATGTTGGGGCTGAAGAATCTTGCATCTGTTAAGGATAAAGTTTTGGAGAAACTAGCGGCT 300
Query 301 GCTTCGGTTCCATCTGAGTCGCTTGAAAACGCTAAACAGTTTTTGGAAGGAGCCATTAAG 360
|||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 301 GCTTCGGTTCCATCGGAGTCGCTTGAAAACGCGAAACAGTTTTTGGAAGGTGCGATTAAG 360
Query 361 GATTTCGCCGGAGCGGCGCAGGGTATGACGAAAGACGCGTTGCACCGGATTAAAACTCAG 420
|||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 361 GATTTCGCTGGAGCGGCGCAGGGTATGACGAAAGACGCCTTGCACCGAATTAAAACTCAT 420
Query 421 CTCGCTGTTATTGTTCCGTCTGTTTCTCCTGCCGTCACCGAAAAGATAGTGGACGATGCT 480
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 421 CTCGCTGTTATTGTTCCGTCTGTTTCTCCTGCTGTCACCGGAAAGATAGTGGACGATGCT 480
Query 481 GAGAAAGAAGCCATTGACGGAGAGGAAGAAGATGAGAGCAAGTCAAAAGAAAGCT-C--- 536
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 GAGAAAGAAGCCACTAACGGAGAGGAAGAAGATGAGAGCAAGTCAAAAGAAAGCTTCGGA 540
Query 537 --CG--G------AAA-GTTGCCGTTTGTTTCTCCGACATCTTCGTTTTTCAGCTCTCTC 585
|| | ||| |||||||| ||| |||||||| ||||| |||||| ||||||||
Sbjct 541 GACGAAGTCGCCGAAAAGTTGCCGTATGTGTCTCCGACGTCTTCATTTTTCGGCTCTCTC 600
Query 586 GCCAAACCTTTCTCCAAGCTTTGA 609
|||||||||||||| |||||||||
Sbjct 601 GCCAAACCTTTCTCGAAGCTTTGA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31756389861
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5