BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16740.1

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911478 jgi|Araly1|911478|Al_scaffold_0001_1732                    627    4e-179


> Ahg911478 jgi|Araly1|911478|Al_scaffold_0001_1732
Length=381

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 367/381 (96%), Gaps = 0/381 (0%)
 Strand=Plus/Plus

Query  84   atgaacaagaaggagaTCTTCAAGCTAGCGAAGGGTTTCAGAGGAAGAGCTAAGAATTGT  143
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  1    ATGAACAAGAAGGAGATCTTCAAGCTAGCGAAGGGTTTCAGAGGAAGAGCGAAGAATTGC  60

Query  144  ATAAGAATTGCGAGGGAAAGAGTCGAGAAAGCTCTGCAGTACTCTTACAGAGATAGGCGC  203
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  61   ATAAGAATTGCGAGAGAAAGAGTTGAGAAAGCTCTGCAGTACTCTTACAGAGATAGGCGC  120

Query  204  AACAAGAAACGTGAGATGAGAGGTCTCTGGATCGAGCGCATCAACGCCGGTTCTCGTCAG  263
            |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  121  AACAAGAAACGTGAGATGAGGGGTCTCTGGATCGAGCGCATCAACGCTGGTTCTCGTCAG  180

Query  264  CACGGTGTGAACTACGGGAACTTCATCCATGGACTGATGAAGGAGAACATCCAGCTGAAC  323
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  181  CACGGTGTGAACTACGGTAATTTCATCCATGGACTGATGAAGGAGAACATCCAGCTGAAC  240

Query  324  CGCAAAGTCCTCTCTGAGTTATCTATGCATGAACCTTACAGTTTCAAAGCACTTGTGGAT  383
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct  241  CGCAAAGTCCTCTCTGAGTTATCTATGCATGAACCTTACAGCTTCAAAGCACTCGTGGAC  300

Query  384  GTCTCCCGCAAGTCGTTCCCTGGAAACAAGAACGTGGTCCAAGCATCTCGGAAAGTAGAC  443
            |||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||
Sbjct  301  GTCTCCCGCAAGTCCTTCCCTGGAAACAAGAACATGGTCCAAGCATCTCGCAAAGTAGAC  360

Query  444  ATTTCATCCATCAATGCCTAG  464
            |||||||||||||||||||||
Sbjct  361  ATTTCATCCATCAATGCCTAG  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21748685730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5