BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16750.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471871 jgi|Araly1|471871|fgenesh2_kg.1__1825__AT1G16750.1 2769 0.0
> Ahg471871 jgi|Araly1|471871|fgenesh2_kg.1__1825__AT1G16750.1
Length=1862
Score = 2769 bits (1499), Expect = 0.0
Identities = 1774/1900 (93%), Gaps = 46/1900 (2%)
Strand=Plus/Plus
Query 1 AACTCATCTTCACAGATGTCTCAAGCAGctctctctctttctctctctctctctcttctt 60
|||||||||||||| ||||||| | || ||||| ||||| | |||||||||||||
Sbjct 1 AACTCATCTTCACACATGTCTC-A--AG----CTCTC--TCTCT-T-TCTCTCTCTTCTT 49
Query 61 tctctGATCACAAGGGTT-ATTTGTCTGAATCTCATTCTATTGAGTCATTATTGACCTCT 119
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 50 TCTCTGATCACAA-GGTTAATTTGTCTGAATCTCATTCTATTGAGTCATTATTGACCTCT 108
Query 120 GCAGAGATCCGGACAAAGTTTTGAAACCGACCACAAGTCCAAGAATCATCGATCATACAA 179
| |||||||| ||| |||||||||||||| | || | || | | | | |
Sbjct 109 GGAGAGATCCAGACTAAGTTTTGAAACCG------A--CC-A-AA--A--G----T-C-A 148
Query 180 CAATGTCTGGAGACTCTCTGCTCACATCTAAACAAGGAGGAGGTTCTTTGTCCATATACT 239
||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||
Sbjct 149 CAATGTCTGGAGACTCTCTGCTCACATCTAAAC-A--AGGAGGTTCTTTGTCCAGATTCT 205
Query 240 CACAGCCAAAGAATGTTACTAAAGAGTTCAACGGTCGTGATTCCCCCAAGAACAGCAAAT 299
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 206 CAAAGCCAAAGAATGTTACTAAAGAGTTCAACGGTTGTGATTCCCCCAAGAGCAGCAAAT 265
Query 300 TCCACCAT-TACAGATTTGAGCTCGAGCACGATGTGAAGCGATTGAAAA-ATCAATTGCA 357
| |||| | ||||||||||| ||||||||||||||| |||| || |||| ||||| ||||
Sbjct 266 TTCACC-TCTACAGATTTGAACTCGAGCACGATGTGCAGCGGTT-AAAAGATCAACTGCA 323
Query 358 GAAAGAGACTGCAATGCGCGCTCTTTTGCTGAAAGCTTCTGATCAAAGCCATAAGATTGA 417
||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 324 GAAAGAGACTGCACTGCGCGCTCTATTGCTCAAAGCTTCAGATCAAAGCCATAAGATTGA 383
Query 418 GCTGTCTCACGCATCTTCTCTTCCTCGCAGTGTTCAAGAACTTCTCACCAATATAGCAGC 477
|||||||||||||||||||||||| || || ||||||||||||||| |||| ||||||||
Sbjct 384 GCTGTCTCACGCATCTTCTCTTCCGCGTAGCGTTCAAGAACTTCTCTCCAACATAGCAGC 443
Query 478 TATGGAAGCTACGGTCTCTAAGCTCGAACAAGAGATCATGTCTCTGCATTTCTTGCTGAT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 TATGGAAGCTACGGTCTCTAAGCTCGAACAAGAGATCATGTCTCTGCATTTCTTGCTGAT 503
Query 538 TCAAGAACGAAACGAGAGAAAACTTGCCGAGTACAACCTCACCCATTCTCTATCTCCACC 597
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 504 TCAAGAACGAAACGAGAGAAAACTTGCCGAGTACAACCTCACTCATTCGCTATCTCCACC 563
Query 598 TAATGCTTTAGATTTGGTTAGACTTTCCGAAAAGAATGAAAGTCTACGCCCTAAAGACCA 657
|||||||||||||||||||||||||||||| || || |||| | ||||| |||| | ||
Sbjct 564 TAATGCTTTAGATTTGGTTAGACTTTCCGAGAACAACGAAACTTTACGCAGTAAACATCA 623
Query 658 CAAAGCACAACCTAGAAGCAAAGTGGCAAAGTCCTTGCAGAGTTTTGACAATGCTAATGA 717
|| ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 624 CAGAGCACAACCTAGAAGCAAACTGGCAAAGTCCTTGCAAAGTTTTGATAATGCTAATGA 683
Query 718 ACTATCCAAGGAGATGATCAGATGCATGAGAAACATATTTGTGTCTCTAGGAGAGACATC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 ACTATCCAAGGAGATGATCAGATGCATGAGAAACATATTTGTGTCTCTAGGAGAGACATC 743
Query 778 TGCAGGATCCAAATCCTCACAAGAGACTGCCAGTGTTTCTTCTCGTGAGAATCCTCCATC 837
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 744 CGCAGGATCCAAATCCTCACAAGAGACTACCAGTGTTTCTTCTCGTGAGAATCCTCCATC 803
Query 838 ATCATCAACGTCATGGTGGTCTCCTTCAGAACACTCACGGATCTCCAGGTGGGCACAGAG 897
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 ATCATCAACATCGTGGTGGTCTCCTTCAGAACACTCACGGATCTCCAGGTGGGCACAGAG 863
Query 898 TCCACGGATCGATATTCAGAAGAACTCAGATGTTTTAGCCACAGAGAGCGATGTGTTTGA 957
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||
Sbjct 864 TCCACGGATCGATATTCAGAAGAACTCAGATGTTTTAGCAACAGAGAGCAATGCATTTGA 923
Query 958 TCTTTATACAGTCCAAGGAAAGCTGAGCTGGGCTGACATCGGGAGTTACAGATCTGCAAC 1017
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TCCATATACAGTCCAAGGAAAGCTGAGCTGGGCTGACATCGGGAGTTACAGATCTGCAAC 983
Query 1018 TGAAGTGGCTTCAATGTCTGTTGAGGAGAAAAGGCTCGGATATGCTTCAGATGAGTTATG 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 984 TGAAGTGGCTTCAATGTCTGTTGAGGAGAAAAGGCTCGCATATGCTTCAGATGAGTTATG 1043
Query 1078 GAGATTCAGGAACCTCGTTGAAAGACTTGCCAGAGTAAATCCAGCAGAACTAAGCCACAA 1137
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1044 GAGATTCAGGAACCTCGTCGAAAGACTTGCCAGAGTAAATCCAACAGAACTAAGCCACAA 1103
Query 1138 CGAGAAGCTTGCCTTCTGGATCAACATATACAATGCCATGATCATGCATGCATACTTGGC 1197
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1104 TGAGAAGCTCGCCTTCTGGATCAACATACACAATGCCATGATCATGCATGCATACTTAGC 1163
Query 1198 TTACGGCGTACCAAAAACTGACTTAAAGCTCTTCTCCTTGATGCAAAAGGCTGCTTATAC 1257
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TTACGGCGTACCAAAAACTGATTTAAAGCTCTTCTCCTTGATGCAAAAGGCTGCTTATAC 1223
Query 1258 AGTTGGTGGCCATTCATACAACGCAGCAACGATCGAATACATGACTTTAAAGATGAGCCC 1317
||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1224 AGTTGGTGGACATTCATACAACGCAGTAACGATCGAATACATGACTCTAAAGATGAGCCC 1283
Query 1318 TCCTCTGCATCGTCCTCAAATTGCTCTGCTTCTCTCCATTCTCAAGCTGAAAGTATCAGA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TCCTCTGCATCGTCCTCAAATTGCTCTGCTTCTCTCCATTCTCAAGCTGAAAGTATCAGA 1343
Query 1378 CGAACAGAGACAAGCGGGGATAAGTACACCGGAACCTCTAGTGTCATTTGCTCTCAGCTG 1437
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1344 TGAACAGAGACAAGCGGGGATAAGTACACCTGAACCTCTAGTGTCATTTGCTCTCAGCTG 1403
Query 1438 CGGGATGCACTCATCTCCTGCGGTGAGAATATACTCAGCCGAGAACGTAGGAGAAGAACT 1497
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1404 CGGAATGCACTCATCTCCTGCGGTGAGGATATACACAGCCGAGAACGTAGGAGAAGAACT 1463
Query 1498 TGAAGAAGCTCAGAAAGATTATATCCAGGCGTCAGTGGGAGTGAGCCCAAGGGGAAAGTT 1557
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1464 TGAAGAAGCTCAGAAAGACTATATCCAGGCGTCAGTGGGAGTGAGCCCCAGGGGGAAGTT 1523
Query 1558 GATTGTGCCCCAAATGCTTCACTGTTTCGCCAAGAAATCTGTCGATGACTGCAAGGTTGC 1617
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1524 GATTGTGCCCCAAATGCTTCACTGTTTTGCCAAGAAATATGTCGATGACTGCAAGGTTGC 1583
Query 1618 TCTGTGGATTTCTCGTCATTTGCCTCCTCGCCAAGCTGCATTTGTTGAGCAGTGTATTCA 1677
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 TCTGTGGATTTCACGTCATTTGCCTCCTCGCCAAGCTGCATTTGTTGAGCAGTGTATTCA 1643
Query 1678 CAGGCGACAATGGTGGGGTTTTCTGGGTTCATCTAGTAGCAAATGCGGCATAGTTCCTTT 1737
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1644 CCGGCGACAACGGTGGGGTTTTCTGGGTTCATCTAGTAGCAAATGCGGCATAGTCCCCTT 1703
Query 1738 TGATTCACGGTTCCGATATTTGTTTCTTCCGTAGCAAGGCATTGATTCACAATGATGTGA 1797
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1704 TGATTCACGGTTCCGGTATTTGTTTCTTCCGTAGCAAGGCATTGATACGCAATGATGTGA 1763
Query 1798 TTAAAGCAAATACTGTTCCGATCCTAGGGTTTAGATCTATGATTATT-T--AGGTGATTC 1854
|||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct 1764 TTAAAGCAAATACTGTTCCGATCCTAGGGTTTAGGTCTATAATTATTATTTAGGTGATTC 1823
Query 1855 AATCTTATTTTCTC-AAACTAATAAACAAAT-AAATGGAT 1892
|||||| ||||||| |||||||||||||||| ||| ||||
Sbjct 1824 AATCTTCTTTTCTCTAAACTAATAAACAAATCAAA-GGAT 1862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5