BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16760.1
Length=2277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312649 jgi|Araly1|312649|fgenesh1_pm.C_scaffold_1001429 3690 0.0
Ahg909524 jgi|Araly1|909524|Al_scaffold_0002_2605 1194 0.0
> Ahg312649 jgi|Araly1|312649|fgenesh1_pm.C_scaffold_1001429
Length=2274
Score = 3690 bits (1998), Expect = 0.0
Identities = 2185/2275 (96%), Gaps = 14/2275 (1%)
Strand=Plus/Plus
Query 1 ATGTGGCTACCTAAAGCAGACGCGACAAAGAAAGGAACAAGAAATGGTTCGGTGGCGATT 60
||||||||||| ||||| ||||||||||| ||||||||||||| |||||| |||||||||
Sbjct 1 ATGTGGCTACCGAAAGCGGACGCGACAAATAAAGGAACAAGAAGTGGTTCTGTGGCGATT 60
Query 61 GCAATAGACAAAGACAAAAGTAGTCAAAATGCTATTAAATGGACATTGGAGAATCTTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAATAGACAAAGACAAAAGTAGTCAAAATGCTATTAAATGGACATTGGAGAATCTTGCT 120
Query 121 ACTCGTGGCCAGACTCTTGCTCTTATTCATGTCCTTCCCAAATCTCAATCTTCTTTAGAC 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCGTGGCCAAACTCTTGCTCTTATTCATGTCCTTCCCAAATCTCAATCTTCTTTAGAC 180
Query 181 ATTGAAGAAGGAATAACACATAAGCAGCAAATGGAGAAACAAACGAAAGATCTCTTTGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGAAGAAGGAATAACACATAAGCAGCAAATGGAGAAACAAACGAAAGATCTCTTTGTA 240
Query 241 TCCTTCCACTGTTAT-TGCAGCCGCAAAGAGATTCATTGTCTGGACGTTGTGCTTGAAGA 299
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCTTCCACTGTT-TCTGCAGCCGCAAAGAGATTCATTGTCTGGACGTTGTGCTTGAAGA 299
Query 300 CGTAGACAAAGTCAAAGCGATTGTTGAATATGTTACGGTCTCTGCGATTGAGAATTTAGT 359
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 300 CGTAGACAAAGTTAAAGCGATAGTCGAATATGTTACGGTCTCTGCGATTGAGAATTTAGT 359
Query 360 TCTTGGTGCTCCATCACGGAATAGCTTTATGAGGAGATTCAAAACGGATTTACCAACGAG 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TCTTGGTGCTCCATCACGGAATAGCTTTATGAGGAGATTCAAAACTGATTTACCAACGAG 419
Query 420 TGTGTCAAAGGCAGCTCCAGATTTCTGCAATGTTTACGTCATTTCCAAAGGCAAAATCTC 479
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTGTCAAAGACAGCTCCAGATTTCTGCAATGTTTACGTCATTTCCAAAGGCAAAATCTC 479
Query 480 TTCCTTACGAAACGCCTCGCGTCTTGCTCCCTACCATCCATCAGT--T-CTCAGCGAAGT 536
||| |||||||||||||| |||| |||||| |||||||||||||| | |||||||||||
Sbjct 480 TTCGTTACGAAACGCCTCACGTCCTGCTCCTTACCATCCATCAGTACTTCTCAGCGAAGT 539
Query 537 AGACGATCATGAAACTATTGCCATTGAGAGAAAACATAAAACAGCTAACACACCGGCCTT 596
|||| |||||||||| |||||| | ||||| |||||||||||||||||||| ||||||||
Sbjct 540 AGACAATCATGAAACGATTGCCCTCGAGAGGAAACATAAAACAGCTAACACGCCGGCCTT 599
Query 597 GCCTAAGGGACGAAGATC-GATTGATTCAGATGTTACCAGATTAGGGCTTCCGAAACCGC 655
||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 600 GCCTAGGGGACGAAGATCAG-TTGATTCAGATGGTACCAGATTAGGGCTTCCGAAACCGC 658
Query 656 CACATGGACATATGAAATTAATGGGGGATTTTTCAGATTCAGAGTCCGAGTTCTCATTCA 715
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 659 CACATGGACATATGAAATTAGTGGGGGATTTCTCAGATTCAGAGTCCGAGTTCTCATTCA 718
Query 716 TCAGTGCTTCTCAACAAGAATCATCCGACCTTTCCTTCATCAGCTCCGGAAGGCCGAGTG 775
|||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 719 TCAGTGCTTCTCAACAAGAATC--C-GACCTTTCCTTCATCAGCTCCGGGAGGCCGAGTG 775
Query 776 TAGACCGATCTTCCTTCACCTACGATTTACCAGAATCAGCAAGAACCTCAAGAATGTCAA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TAGACCGATCTTCCTTCACCTACGATTTACCAGAATCAGCAAGAACCTCAAGAATGTCAA 835
Query 836 CGAGCTCAGAGCAGAGCATTGGGTCTCATAGATTAGGAATCAAGTTTACAGATTTGAGTT 895
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 836 CGAGCTCAGAGCAGAGCATTGGGTCACATAGATTAGGAATCAAGTTTACGGATTTGAGTT 895
Query 896 ATCTCAATGGTTCTTCTTCGGTTTCTGATGAAAGTGGAAGAACTTCTTGTTCATTTTCAT 955
||||||||||||||||| ||||||||||||| |||||||||||||||||||| | |||||
Sbjct 896 ATCTCAATGGTTCTTCTACGGTTTCTGATGAGAGTGGAAGAACTTCTTGTTCCTATTCAT 955
Query 956 CTCAGAGCTTGAATGATGTAGAAGCTCAAATGAAGAGACTGCGTTTGGAGCTGAAACAAA 1015
| ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 956 CACAGAGCTTGGATGATGTAGAAGCTCAAATGAGGAGACTGCGTTTAGAGCTGAAACAAA 1015
Query 1016 CTATGGATATGTATAGCTCAGCTTGCAGAGAAGCTTTAACCGCAAGGAACGAGGCGACAG 1075
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1016 CTATGGATATGTATAGTTCAGCTTGCAGAGAAGCTTTAACCGCAAGGCACGAGGCGACAG 1075
Query 1076 AGCTGCAAAAGCTGAGGACAGAAGAGGAAAGACGATTGGAGGAACTAAAGATGACAGAGG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 AGCTGCAAAAGCTGAGGACAGAAGAGGAAAGACGATTGGAGGAACTAAAGATGACAGAGG 1135
Query 1136 AAACAGCAATGTCAATAGTGGAAAACGAGAGAGCAAAAGCGAAAACAGCCTTGGAAGCTG 1195
||| |||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1136 AAATAGCAATGTCAATGGTTGAAAACGAGAGAGCAAAAGCCAAAACAGCCTTGGAAGCTG 1195
Query 1196 CTGAAGCTGCAAACAGGCTTGCTGAAGTGGAAGCAAAGAG-ACGGGTACACGCAGAGATG 1254
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1196 CTGAAGCTGCAAACAGGCTTGCTGAAGTGGAAGCAAAGAGGA-GGGTACACGCAGAGATG 1254
Query 1255 AAGGTATTGAAAGAAAGCGATTCATTT-TCTCGACATAGCATTGTTCGATACAGAAAATA 1313
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 1255 AAGGTATTGAAAGAAAGCGATTC-TTTCTCTCGACATAGCATTGTTCGATATAGAAAATA 1313
Query 1314 TAGTGTTCAAGAGATCGAAGAAGGTACAGCAAACTTCGCAGAGTCAAGAAAAGTTGGAGA 1373
| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1314 CACTGTTCAAGAGATCGAAGAAGGTACAGCGAACTTCGCAGAATCAAGAAAAGTTGGAGA 1373
Query 1374 AGGAGGGTATGGGCCTGTGTTTAGAGGTCATCTTGATCACACAAGTGTTGCTGTTAAGGT 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 AGGAGGGTATGGGCCTGTGTTTAGAGGTCATCTTGATCACACAAGTGTTGCTGTTAAGGT 1433
Query 1434 TTTACGCCCTGATGCTGCTCAAGGAAGATCACAGTTTCACAAAGAGGTTGAAGTACTAAG 1493
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1434 TTTACGCCCTGACGCTGCTCAAGGAAGATCACAGTTTCACAAAGAGGTTGAGGTATTAAG 1493
Query 1494 CTGCATAAGGCATCCAAACATGGTGCTTCTCTTAGGAGCTTGTCCAGAATACGGTATTCT 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 CTGCATAAGGCATCCAAACATGGTGCTTCTCTTAGGAGCTTGTCCAGAATACGGTATTCT 1553
Query 1554 CGTCTACGAATACATGGCCAGAGGAAGCTTAGATGATCGTCTTTTCAGACGCGGAAACAC 1613
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 1554 CGTCTACGAATACATGGCCAAAGGAAGCTTAGATGACCGCCTTTTCAGACGCGGAAACAC 1613
Query 1614 GCCGCCGATTTCATGGCAATTGCGTTTCAGAATCGCTGCTGAGATCGCTACGGGACTCTT 1673
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
Sbjct 1614 GCCCCCGATTTCATGGCAATTGCGTTTCAGAATAGCTGCTGAGATCGCTACGGGTCTCCT 1673
Query 1674 GTTTCTCCACCAGACCAAACCAGAGCCAATTGTCCACAGAGACTTGAAGCCAGGAAACGT 1733
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1674 CTTTCTCCACCAGACCAAACCAGAACCAATTGTCCACAGAGACTTGAAGCCAGGAAACGT 1733
Query 1734 TCTTCTCGACCACAATTACGTCAGCAAGATTAGCGATGTCGGGCTTGCAAGACTCGTCCC 1793
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1734 TCTTCTCGACCACAATTACGTCAGCAAGATCAGCGATGTCGGGCTTGCAAGACTCGTCCC 1793
Query 1794 CGCGGTAGCTGAAAACGTGACCCAGTACAGAGTAACATCAGCTGCAGGAACGTTTTGTTA 1853
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1794 TGCGGTAGCTGAAAACGTGACTCAGTACAGAGTAACATCAGCTGCAGGAACGTTCTGTTA 1853
Query 1854 CATAGACCCAGAGTATCAACAAACCGGAATGTTGGGTGTGAAATCAGATGTTTATTCACT 1913
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1854 CATCGACCCAGAGTATCAACAAACCGGAATGTTGGGTGTGAAATCAGATGTTTATTCTCT 1913
Query 1914 GGGAATCATGCTTTTGCAGCTTTTGACGGCAAAACAGCCGATGGGTTTGGCTTATTATGT 1973
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1914 CGGAATCATGCTTTTGCAGCTTTTGACGGCGAAACAGCCGATGGGTTTGGCTTATTATGT 1973
Query 1974 GGAACAAGCGATAGAAGAAGGGACATTGAAAGATATGCTTGATCCTGCAGTACCAGATTG 2033
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1974 GGAACAAGCGATAGAAGAAGGGACATTGAAAGATATGCTTGATCCTGCAGTACCGGATTG 2033
Query 2034 GCCATTAGAGGAAGCTTTGTCTCTTGCCAAGTTATCGCTACAATGTGCTGAGTTGAGAAG 2093
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2034 GCCATTAGAGGAAGCTTTGTCTCTTGCGAAGTTATCGCTACAATGTGCTGAGTTGAGAAG 2093
Query 2094 AAAAGATAGGCCTGATCTTGGTAAAGAAGTGATGCCTGAGCTTAGTAGACTTAGAGAGAT 2153
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2094 AAAAGATAGGCCTGATCTTGGTAAAGAAGTGATGCCTGAGCTTAATAGACTTAGAGAGAT 2153
Query 2154 TGGTGAAGAGAGTCTTGATTCTGTGTATTATGCTGGACAAGGACGATCTTCGCATCCTAG 2213
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2154 TGGTGAAGAGAGTCTTGAGTCTGTGTTTTATGCTGGACAAGGACGATCTTCGCATCCTAG 2213
Query 2214 TCAAGTCTCTTATACATCGGTAAGAGTTTTTAATGGCAAGACATTGACATCAGAT 2268
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2214 TCAAGTCTCTTATACATCGGTAAGAGTTTTTAATTCCAAGACATTTCCATCAGAT 2268
> Ahg909524 jgi|Araly1|909524|Al_scaffold_0002_2605
Length=2259
Score = 1194 bits (646), Expect = 0.0
Identities = 1253/1538 (81%), Gaps = 74/1538 (5%)
Strand=Plus/Plus
Query 742 GACCTTTCCTTCATCAGCTCCGGAAGGCCGAGTGTAGACCGATCTTCCTTCA-CCTACGA 800
||| |||| ||||||||||| || || ||||| || || || |||||||| | ||| ||
Sbjct 748 GACATTTCATTCATCAGCTCAGGGAGACCGAGCGTTGAGCGCTCTTCCTTTAGCCT-TGA 806
Query 801 TTTACCAGAATCAGCAAGAACCTCAAGAATGTCAACGAGCTCAGAGCAGAGCATTGGGTC 860
||| || ||||| ||||| || |||||||||||||||||||||||||| |||||||| ||
Sbjct 807 TTTTCCTGAATCTGCAAGGACTTCAAGAATGTCAACGAGCTCAGAGCAAAGCATTGGCTC 866
Query 861 TCATAGATTAGGAATCAAGTTTACAGAT-TTGAGTTATCTC-AATGGTTCTTCTTCGGTT 918
|||| | || ||||| ||||| | ||| || ||| || | || | || ||| | ||
Sbjct 867 TCATCGCTTGGGAATTAAGTTCAGTGATCCTG-GTT-TCCCTAACGAATCCTCTAC-ATT 923
Query 919 -TCTGATGAAAGTGGAAGAACTTCTTGTTCATTTTCATCTCAGAGCTTGAATGATGTAGA 977
||||| || || || ||||| || || | |||||||||||||||| ||||||| ||
Sbjct 924 CTCTGAAGAGAGCGGTAGAACATC---CTCCTATTCATCTCAGAGCTTGGATGATGTTGA 980
Query 978 AGCTCAAATGAAGAGACTGCGTTTGGAGCTGAAACAAACTATGGATATGTATAGCTCAGC 1037
|||| |||||||||| |||||| | ||||| |||||||| ||||||||||||||| ||||
Sbjct 981 AGCTGAAATGAAGAGGCTGCGTCTAGAGCTCAAACAAACCATGGATATGTATAGCACAGC 1040
Query 1038 TTGCAGAGAAGCTTTAACCGCAAG-GAACGAGGCGACAGAGCTGCAAAAGCTGAGGACAG 1096
||||| ||||||||||| ||| || ||| |||| || ||||| ||||||||||| || |
Sbjct 1041 TTGCAAAGAAGCTTTAAGCGCTAGACAAC-AGGCAACCGAGCTTCAAAAGCTGAGAACCG 1099
Query 1097 AAGAGGAAAGACGATTGGAGGAA-CTAAAGATG-ACAGAGGAAACAGCAATGTCAATAGT 1154
||||||| ||||| ||||| ||| | ||||| | |||||||| ||||||||||||||||
Sbjct 1100 AAGAGGAGAGACGGTTGGAAGAAGC-AAAGA-GTTCAGAGGAAGCAGCAATGTCAATAGT 1157
Query 1155 GGAAAACGAGAGAGCAAAAGCGAAAACAGCCTTGGAAGCTGCTGAAGCTGCAAACAGGCT 1214
|||||| |||||||| ||||| ||| ||||||||||||||||||||||||| || | | |
Sbjct 1158 GGAAAAGGAGAGAGCTAAAGCCAAAGCAGCCTTGGAAGCTGCTGAAGCTGCTAAGA-GAT 1216
Query 1215 T-GCTGAAGTGGAAGC-AAAGAGACGGGTACAC-GCAGAGATGAAGGTATTGAAAGAAAG 1271
| || ||||||||||| ||| ||| ||| || |||||||||||| | || ||| ||
Sbjct 1217 TAGCAGAAGTGGAAGCTAAA-AGA-AGGTTGACTGCAGAGATGAAGACACTG-AAGGAAT 1273
Query 1272 C-GATTCATTTTCTCGACATAGCA-TTGTTCGATACAGAAAATATA-GTGTTCAAGAGAT 1328
| |||||||| ||||| | || | ||||||| || || ||||| | | ||| |||| ||
Sbjct 1274 CAGATTCATTCTCTCG-C--AG-ATTTGTTCGGTATAGGAAATACACG-GTTGAAGAAAT 1328
Query 1329 CGAAGAAGGTACAGCAAACTTCGCAGAGTCAAGAAAA-GTTGGAGAAGGAGGGTATGGGC 1387
|||||||| ||| |||| || |||||||| |||| || ||||||||||| ||||| |
Sbjct 1329 CGAAGAAGCTACTTCAAATTTTGCAGAGTC-TCAAAAGGTAGGAGAAGGAGGCTATGGAC 1387
Query 1388 CTGTGTTTAGAGGTC-ATCTTGATCACACAAGTGTTGCTGTTAAGGTTTTACGCCCTGAT 1446
||||||||||||| | ||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 1388 CTGTGTTTAGAGG-CTTTCTTGATCACACAAGTGTTGCTGTTAAAGTTCTACGCCCAGAC 1446
Query 1447 GCTGCTCAAGGAAGATCACAGTTTCACAAAGAGGTTGAAGTACTAAGCTGCATAAGGCAT 1506
|| |||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1447 GCAGCTCAAGGGAGATCACAGTTTCAGAAAGAGGTTGAAGTATTAAGCTGCATAAGGCAT 1506
Query 1507 CCAAACATGGTGCTTCT-CTTAGGAGCTTGTCCAGAATACGGTATTCTCGTCTACGAATA 1565
|||||||||||||| || ||| |||||||||||||||| || ||||| || || |||||
Sbjct 1507 CCAAACATGGTGCTCCTTCTT-GGAGCTTGTCCAGAATTTGGGATTCTTGTTTATGAATA 1565
Query 1566 CATGGCCAGAGGAAGCTTAGATGATCGTCTTTTCA-GACGCGGAAACACGCCGCCGATTT 1624
|||||||| |||||| ||||| || || ||||||| | || |||||||| ||||| |||
Sbjct 1566 CATGGCCAAAGGAAGTTTAGAAGACCGGCTTTTCATG-CGAGGAAACACACCGCCAATTA 1624
Query 1625 CATGGCAATTGCGTTTCAGAATCGCTGCTGAGATCGCTACGGGACTCTTGTTTCTCCACC 1684
| ||||| | ||||||||||| |||||||||||||| ||||||||| | || |||||||
Sbjct 1625 CCTGGCAGCTACGTTTCAGAATTGCTGCTGAGATCGCCACGGGACTCCTCTTCCTCCACC 1684
Query 1685 AGACCAAACCAGAGCCAATTGTCCACAGAGAC-TTGAAGCCAGGAAACGTTCTTCTCGAC 1743
|||||||||| || |||||||||||||||||| || || |||||||| || || || ||
Sbjct 1685 AGACCAAACCTGAACCAATTGTCCACAGAGACCTTAAA-CCAGGAAATGTGCTCCTTGAT 1743
Query 1744 CACAATTACGTCAGCAAGATTAGCGATGTCGGGCTTGCAAGACTCGTCCCCGCGGTAGCT 1803
||||||| || |||||||| |||||||| ||||| |||||| | ||||| || |||||
Sbjct 1744 TACAATTATGTGAGCAAGATCAGCGATGTTGGGCTAGCAAGATTAGTCCCTGCAGTAGCA 1803
Query 1804 GAAAACGTGACCCAGTACAGAGTAACATCAGCTGCAGGAACGTTT-TGTTACATAGACCC 1862
|| ||||| || ||||||||||| || |||||||||||||| ||| |||||||| || ||
Sbjct 1804 GAGAACGTTACACAGTACAGAGTCACTTCAGCTGCAGGAAC-TTTCTGTTACATTGATCC 1862
Query 1863 AGAGTATCAACAAACCGGAATGTTGGGTGTGAAATCAGATGTTTATTCACT-GGGAATCA 1921
||||| |||||||||||||||||||||||||| |||||||||||||| || |||| | |
Sbjct 1863 TGAGTACCAACAAACCGGAATGTTGGGTGTGAAGTCAGATGTTTATTCGCTCGGGA-TAA 1921
Query 1922 TGCTTTTGCAGCTTTTGACGGCAAAACAGCCGATGGGTTTGGCTTATTATGTGGAACAAG 1981
||||||| || | ||||| || ||||| || |||||||| |||||||| || || ||||
Sbjct 1922 TGCTTTTACAAATCTTGACTGCGAAACAACCAATGGGTTTAGCTTATTACGTTGAGCAAG 1981
Query 1982 CGATAGAAGAAGGGACA-TTGAAAGATATGCTTGATCCTGCAGTACCAGATTGGCC-ATT 2039
|||| ||||| ||||| || || |||||||||||||| |||||||| || ||||| ||
Sbjct 1982 CGATCGAAGAGGGGACTCTT-AAGGATATGCTTGATCCAGCAGTACCGGACTGGCCTATG 2040
Query 2040 AGAGGAAGCTTTGTCTCTT-GCCAAG-TTATCGCTACAATGTGCTGAGTTGAGAAGAAAA 2097
|| |||||| ||||| || || || || ||||| ||||| || || || |||||||||
Sbjct 2041 -GAAGAAGCTCTGTCT-TTAGCTAAACTT-TCGCTTCAATGCGCGGAATTAAGAAGAAAA 2097
Query 2098 GATAGGCCTGATCTTGGTAAAGA-AGTGATG-CCTGAGCTTAGTAGACTTA-GAGAGATT 2154
||||| |||||||| || ||||| | | || |||||||| | | | ||| |||||||
Sbjct 2098 GATAGACCTGATCTCGGGAAAGAGA-T-ATTACCTGAGCTCAATCGG-TTAAGAGAGATC 2154
Query 2155 GGTGAAGAGAGTCTT-GATTCTGTGTATTATGCTGGA---CAAGGAC-GATCTTCGCATC 2209
|||||||||||| || || ||||| |||||| ||| |||||| | || |||| |
Sbjct 2155 GGTGAAGAGAGT-TTAGAGAGTGTGTTTTATGCAGGAAGTCAAGGAAAG-TCCCCGCA-C 2211
Query 2210 -CTAGTCAAGTCTC--TT--ATACATCGGTAAGAGTTT 2242
|||| |||||||| || || ||||||| || ||||
Sbjct 2212 ACTAGCCAAGTCTCGATTTCAT-CATCGGTGAGTGTTT 2248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85741141495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5