BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16770.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471873 jgi|Araly1|471873|fgenesh2_kg.1__1827__AT1G16770.1 1781 0.0
> Ahg471873 jgi|Araly1|471873|fgenesh2_kg.1__1827__AT1G16770.1
Length=1145
Score = 1781 bits (964), Expect = 0.0
Identities = 1088/1148 (95%), Gaps = 7/1148 (1%)
Strand=Plus/Plus
Query 1 AAGTTAGGAGAATTTTGCAACGATGGGACAAGGTAAAGAAGTTAAGACGAGACCAGATCC 60
||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAGGTAGGAGAATTTTGCAACAATGGGACAAGGTAGAGAAGTTAAGACGAGACCAGATCC 60
Query 61 TCAAGTTGAGATTCAGGAAAGAGGAGAAATATTCTTCTTTTATAGACCAAAGGTTAACAA 120
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 TCAAGTTGAGATTCAGGAAAGAGGAGAAATATTCTTCTTTTATAGGCCGAAGGTTAACAA 120
Query 121 AGAAGAAGCTCACAGTGTGGACGATGTTCAAAGGCTATACATAGTGATGCGTCCTGAGTC 180
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGATGAAGCTCACAGTGTGGACGATGTTCAAAGGTTATACATAGTGATGCGTCCTGAGTC 180
Query 181 TGGTGAGAATCCCACCGAAGAGAAACAAGACCCTCTTTCAGGTAAAGAAGGCTCCGATAA 240
||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 181 CGGTGAGAATCCCACCCAGGAGAAACAAGACCCTCTTTCAGGTAAAGAAGGTTCCTATAA 240
Query 241 AGATTCCGGTGACGGAGAGGCGAGTGGTAGCTCCTCCGGCGCCAAGAACCAAGGTGAAGG 300
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 AGATTCCGGTGACGGAGATGCGAGTAGTAGCTCCTCCGGCGCCAAGAACCAAGGTGAAGG 300
Query 301 AGGACACGGCGTCGAGAAAGTGAACATCGAGAAACAGCTTCTGCTACGATTCATTGTGAT 360
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AGGACACGGTGTCGAGAAAGTGAACATCGAGGAACAGCTTCTGCTACGATTCATTGTGAT 360
Query 361 GGGTAAGAAAAGTCTTCCTGATCCGAGCAAGAAGTCGCAACCTTTTTGGGGTTTCGTGGA 420
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 361 GGGTAAGAAAAGTCTTCCTGATCCAAGCAAGAAATCGCAACCTTTTTGGGGTTTCGTGGA 420
Query 421 AATGGTGACGACCAATGTTGAAGATGTTAAAAATGCTCTCAAAGGAGAGGAGTATGAGAC 480
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 421 GATGGTGACGACCAATGTTGAAGATGTTAAAACTGCTCTCAAAGGAGACGAGTATGAGAC 480
Query 481 GAAGACTCGAGGACATAGACACAAACCTCCGGCGAGAGCTGTCGGAGAAGGAATATACAG 540
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 481 CAAGACTCGAGGACATAGACACAAACCGCCGGCGAGAGCTGTTGGAGAAGGAATATACAG 540
Query 541 AATTCTCCGACATAAACCTAATCCGACAAGAAAGCACCACACACATCTTGTCTACAAACT 600
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 541 AATTCTCCGACATAAACCTAGTCCGACTAGAAAGCACCACACACATCTTGTCTACAAACT 600
Query 601 CGAATTCCCATCGG-TTTCGCAGACCAGAGAACACGAGCCACAAGAGTCGCTGAACATTG 659
|||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 CGAATTCCCATCGGATTT-GCAGACCAGAGCACACGAGCCACAAGAGTCGATGAACATTG 659
Query 660 AGCCAGAAGGATCCTTCTTGATCCAAATACGAAATCCAGAGCAAGGAGGAGGAGGTAGGT 719
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCCCGAAGGATCCTTCTTGATTCAAATACGAAATCCAGAGCAAGGAGGAGGAGGTAGGT 719
Query 720 CAGGGTTTGGTGGGCTACAGAGAAAGAGAAAGGCCCAGTTTCCGGTCCATATTCAGGCTC 779
|||||||||||||| | ||||||||||| ||||||||||| |||| |||| |||| ||||
Sbjct 720 CAGGGTTTGGTGGGTTGCAGAGAAAGAGGAAGGCCCAGTTCCCGGCCCATCTTCAAGCTC 779
Query 780 ATTTAGGTCATACCCGGTTTGGGCCAGCCGACCCACCTGATTTCCTGAATTATGAAGGAT 839
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 780 ATTTAGGTCATACCCGGTTTGATCCAGCCGACCCGCCCGATTTCCTGAATTATGAAGGAT 839
Query 840 GTGAGTTGTTACTGATCTCTGCTTCCGACGATATAGAGGAAGAGTTAGGGATGGAGTTGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGAGTTGTTACTGATCTCTGCTTCCGACGATATAGAGGAAGAGTTAGGGATGGAGTTGG 899
Query 900 AGCCTGAGGGTGACGGTGAAGAATCGACATGCGATCTTTTGAAGACTTTCGGGGACGATG 959
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 AGCCTGAGGGTGACGGTGATGAATCGACATGCGATCTTTTGAAGACTTTCGGGGATGATG 959
Query 960 TTGAAGCTACTCCGTTGCTTCGTGGTACATGGGAGTAATAGCTGATGCTCACTAGTCACT 1019
|| ||||||||||| ||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 960 TTAAAGCTACTCCGCTGCTTCGCGGTACATGGGAGTAATGGCGGATGCTCACTAGTCACT 1019
Query 1020 AATATTC---CTAGATGATAGCTACTAGCTAGTGTTTAAAGTATGGACGGCTTTAGGTGG 1076
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 AATATTTTAACTAGATGATAGCTACTAGCTAGTGTTTAAAGTATGGACGGCTTTATGTGG 1079
Query 1077 TTATAGTTTGTCTTTCTCGGGTAAAATGGTGATGTGTTCTCTTGGTGTCAAGTTTTGTGT 1136
||||| || ||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1080 TTATA-TT-GTCTTTCTCGGGTAAAATGATGATGTATTCTCTTGGTGTCAAGTTCTGTGT 1137
Query 1137 AAATCTGT 1144
||||||||
Sbjct 1138 AAATCTGT 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5