BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16780.1
Length=2839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477059 jgi|Araly1|477059|fgenesh2_kg.2__2189__AT1G78920.2 3090 0.0
Ahg920584 jgi|Araly1|920584|scaffold_101865.1 1153 0.0
> Ahg477059 jgi|Araly1|477059|fgenesh2_kg.2__2189__AT1G78920.2
Length=3393
Score = 3090 bits (1673), Expect = 0.0
Identities = 2239/2517 (89%), Gaps = 20/2517 (1%)
Strand=Plus/Plus
Query 166 ATCAAGATTCAGCGTCCAAGTTCTGGGGCTGAGCTGCCCCGTAGCACGGGTTTTATACCT 225
||||| ||||||||||| ||||||||||||||| |||||| ||||| | ||||| ||||
Sbjct 324 ATCAAAATTCAGCGTCCTAGTTCTGGGGCTGAGTTGCCCCATAGCATTGATTTTACACCT 383
Query 226 CTTCCCCTTGTTCGGAGGGCAAATTC-GTTACAAAACATGATGATGGATGAAGATGTTGA 284
|| ||| | || | ||||||||||| | | |||||||||||||||||||||||| ||||
Sbjct 384 CTACCCATAGTCCCAAGGGCAAATTCAGCT-CAAAACATGATGATGGATGAAGATATTGA 442
Query 285 GCAGGCCACTCTGGTTTCTTACAGTGACAAGCCAAGGAC-CTTCCCGGATATGCGTAGTA 343
|||||||| | || | |||| || ||||| ||| ||| | ||||| | ||||||||||
Sbjct 443 GCAGGCCAGTTTGATGTCTTTCAATGACAGGCCTAGGGCTTTTCCC-AACATGCGTAGTA 501
Query 344 AAACTTACAGTCCATTGATAATCCGCATTCTGA-GAAATTTAAATGTTCGTGCCCTTTCT 402
|||| || |||||| ||||| |||| ||||| | |||| |||||||| |||| ||||||
Sbjct 502 AAACCTATAGTCCACTGATATTCCGGATTCTTAGGAAA-TTAAATGTCCGTGTCCTTTC- 559
Query 403 G-TACTTCTGCTTTTGAGCTTTGGAGGGATCTTTTACATGGGAGCACGTACTTCTCCCAT 461
| || |||||||||| ||||||||| |||||||||| |||||||| |||||||||||||
Sbjct 560 GATAATTCTGCTTTTCTGCTTTGGAGCGATCTTTTACGTGGGAGCAAGTACTTCTCCCAT 619
Query 462 CATTGTGTTCGTCTTTGTAGTATGCATCATCAG-TTTCATGTTGT-CAGTATACCTGACC 519
|| ||||||||||| | ||||||||||||||| |||| | |||| || |||| || |||
Sbjct 620 AATCGTGTTCGTCTTCGCAGTATGCATCATCAGCTTTC-TTTTGTCCA-TATATCTAACC 677
Query 520 AAGTGGGTATTAGCCAAAGATGAAGGACCTCCAGAAATGGTTCAGATATCAGATGCTATA 579
|||||||| ||||| |||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 678 AAGTGGGTTTTAGCGAAAGATGAAGGACCTCCAGAGATGGTTGAGATATCAGATGCTATA 737
Query 580 CGTGATGGAGCTGAAGGATTTTTAAGAACGCAGTATGGTACTATATCCAAAATGGCGT-T 638
||||||||||||||||| ||||| |||||||||||| | ||||||||||| ||||| | |
Sbjct 738 CGTGATGGAGCTGAAGGGTTTTTCAGAACGCAGTATAGCACTATATCCAAGATGGC-TGT 796
Query 639 CTTGCTAGCTTTTGTGATCCTTTGCATATACT-TGTTCCGTAACTTAACCCCCCAGCAAG 697
|||||||||||||||||| ||||||||||| | | ||||||| |||||| ||||||||||
Sbjct 797 CTTGCTAGCTTTTGTGATTCTTTGCATATA-TCTATTCCGTAGCTTAACTCCCCAGCAAG 855
Query 698 AGGCTTCTGGTTTAGGAAGGACAATGTCTGCATACATTACTGTTGCTGCATTTCTTTTGG 757
||||| |||||||||||||| | |||||||| || |||||||||||||||||||||||||
Sbjct 856 AGGCTGCTGGTTTAGGAAGGGCGATGTCTGCCTATATTACTGTTGCTGCATTTCTTTTGG 915
Query 758 GTGCGCTATGTTCAGGTATTGCTGGATATGTTGGAATGTGGGTGTCAGTTCGTGCTAATG 817
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GGGCTCTATGCTCAGGTATTGCTGGATATGTTGGAATGTGGGTGTCAGTTCGTGCTAATG 975
Query 818 TACGGGTTTCCAGTGCTGCTAGACGATCCGCAAGGGAAGCATTGCAGATAGCTGTTCGTG 877
| ||||| ||||||||||| |||||||| || || ||||||||||||||||| |||||||
Sbjct 976 TGCGGGTCTCCAGTGCTGCCAGACGATCTGCGAGAGAAGCATTGCAGATAGCCGTTCGTG 1035
Query 878 CTGGTGGATTCTCAGCTCTGGTTGTTGTTGGTATGGCTGTGATTGGTATTGCCATCCTGT 937
||||||| || ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1036 CTGGTGGGTTTTCAGCCCTGGTTGTTGTTGGTATGGCTGTGATTGGTATCGCCATCCTCT 1095
Query 938 ATTCTACATTTTATGTATGGTTGGACGTGGATTCACCTGGCTCAATGAAGGTTACTGATC 997
|||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||| |
Sbjct 1096 ATTCTACATTTTATGTTTGGTTGGGCGTGGATTCACCAGGCTCAATGAATGTTACTGACC 1155
Query 998 TGCCTCTTCTTCTTGTGGGATATGGTTTTGGTGCATCATTTGTTGCCTTATTTGCTCAGT 1057
||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1156 TGCCTCTGCTTCTCGTGGGATATGGTTTTGGTGCTTCGTTTGTTGCCTTATTTGCTCAGT 1215
Query 1058 TGGGTGGTGGAATATATACTAAGGGAGCTGATGTCGGGGCAGATCTGGTCGGGAAAGTTG 1117
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 1216 TGGGTGGTGGAATATATACTAAGGGAGCTGATGTTGGGGCAGATCTCGTTGGGAAAGTTG 1275
Query 1118 AGCACGGTATTCCTGAGGATGACCCTCGGAACCCTGCAGTTATAGCTGATTTGGTTGGAG 1177
|||| || ||||| |||||||| ||||| || ||||| ||||| ||||||||||||||||
Sbjct 1276 AGCAGGGAATTCCCGAGGATGATCCTCGAAATCCTGCTGTTATTGCTGATTTGGTTGGAG 1335
Query 1178 ACAATGTTGGGGACTGCGCTGCTCGAGGTGCTGATTTATTTGAAAGTATAGCTGCAGAAA 1237
||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1336 ACAATGTGGGGGACTGTGCTGCTAGAGGTGCTGATTTATTTGAAAGTATAGCTGCAGAAA 1395
Query 1238 TCATCAGTGCAATGATACTTGGGGGTACAATGGCTCAGAAGTGCAAAATTGAAGATCCAT 1297
||||||||||||||||||| || || ||||||||| ||||||||||||||||||||||||
Sbjct 1396 TCATCAGTGCAATGATACTAGGTGGAACAATGGCTAAGAAGTGCAAAATTGAAGATCCAT 1455
Query 1298 CTGGTTTTATT-TTATTTCCTCTAGTTGTTCACTCGTTTGACTTGGTAATATCATCAATT 1356
| || ||||| || ||||||||||||||||| || ||||||||| | ||||||||||||
Sbjct 1456 CAGGCTTTATCCTT-TTTCCTCTAGTTGTTCATTCTTTTGACTTGATTATATCATCAATT 1514
Query 1357 GGTATTCTATCGATCAAAGGAACTCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCA 1416
||||||||||| ||||| ||||| || |||| |||||||||||||| ||||||||||||
Sbjct 1515 GGTATTCTATCAATCAAGGGAACACGTGATGCCAGTGTGAAATCTCCGGTAGAGGATCCA 1574
Query 1417 ATGGTTGTTCTTCAGAAAGGATATTCGCTGACTATTATATTAGCTGTTTTGACATTTGGC 1476
|||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1575 ATGGCTGTACTTCAGAGAGGATATTCTCTGACTATTATATTAGCTGTTTTGACATTTGGC 1634
Query 1477 GCGTCGACTCGCTGGCTGCTATACACAGAACAAGCTCCATCTGCTTGGTTGAATTTCTTC 1536
|||||||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||| |
Sbjct 1635 GCGTCGACTCGCTGGCTGCTTTACACTGAACAGGCTCCATCTGCATGGTTCAATTTCGCC 1694
Query 1537 ATGTGTGGCTTAGTTGGCATTATCACAGCCTATGTCTTTGTCTGGATATCCAGATATTAT 1596
| ||||| || |||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct 1695 CTATGTGGGTTGGTTGGCATCATCACAGCCTATATCTTTGTCTGGATATCCAAATATTAT 1754
Query 1597 ACTGACTATAAGTATGAGCCTGTTCGGACGTTGGCTCTTGCTAGCTCCACTGGTCATGGA 1656
|| ||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1755 ACAGACTATAAGCACGAGCCTGTTCGAACGTTGGCTCTTGCTAGCTCGACTGGTCATGGG 1814
Query 1657 ACCAATATAATTGCTGGGGTCAGCTTGGGTCTGGAATCCACGGCTCTTCCTGTTTTGGTT 1716
|| ||||| |||||||||||||||||||| |||||||| || |||||||| |||||| |
Sbjct 1815 ACTAATATCATTGCTGGGGTCAGCTTGGGCCTGGAATCAACTGCTCTTCCAGTTTTGACT 1874
Query 1717 ATAAGTGTAGCTATCATTTCTGCTTTTTGGCTGGGCAATACCTCGGGACTAATAGATGAA 1776
|||||||||||||| |||||||| | ||||||||||||||||||||||||| | || |||
Sbjct 1875 ATAAGTGTAGCTATTATTTCTGCGTATTGGCTGGGCAATACCTCGGGACTAGTGGACGAA 1934
Query 1777 AAGGGAAACCCCACTGGAGGTCTATTTGGAACAGCTGTAGCTACAATGGGAATGTTGAGC 1836
|| || | |||||||||||||||||||||||||| || ||||||||||||||| | |||
Sbjct 1935 AATGGCATTCCCACTGGAGGTCTATTTGGAACAGCCGTTGCTACAATGGGAATGCTAAGC 1994
Query 1837 ACTGCAGCTTATGTTCTTACAATGGACATGTTTGGTCCCATAGCTGATAATGCAGGTGGG 1896
|||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||||
Sbjct 1995 ACTGCAGCTTATGTCCTTACTATGGACATGTTTGGCCCCATAGCTGACAACGCTGGTGGG 2054
Query 1897 ATTGTTGAGATGAGCCAGCAGCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCT 1956
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2055 ATTGTCGAGATGAGCCAGCAGCCAGAAAGTGTCCGTGAGATCACTGATCTTCTTGATGCT 2114
Query 1957 GTTGGGAATACCACAAAAGCAACAACAAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCA 2016
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2115 GTTGGGAACACCACAAAAGCAACAACGAAAGGGTTTGCCATTGGATCTGCTGCCCTTGCG 2174
Query 2017 TCATTCCTTCTTTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTATCTTTT 2076
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2175 TCATTCCTTCTCTTTAGTGCGTATATGGACGAGGTTTCAGCGTTTGCTAATGTGTCTTTC 2234
Query 2077 AAAGAGGTTGATATTGCGATCCCAGAAGTCTTCATTGGAGGGTTATTAGGTGCCATGCTT 2136
||||||||||||||||| ||||||||||| ||| | || |||||||| ||| ||||||||
Sbjct 2235 AAAGAGGTTGATATTGCTATCCCAGAAGTGTTCGTAGGTGGGTTATTGGGTTCCATGCTT 2294
Query 2137 ATATTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTC 2196
|| ||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 2295 ATTTTCCTCTTTAGTGCTTGGGCATGTGCGGCAGTTGGTCGAACTGCACAAGAGGTTGTC 2354
Query 2197 AACGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGGACTACAAGGAGAAGCCA 2256
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 2355 AACGAAGTAAGAAGACAATTTATTGAGAGGCCTGGCATAATGGAGTACAAGGAGAAGCCA 2414
Query 2257 GATTATGGTCGATGTGTCGCCATTGTCGCATCTTCAGCTTTGAGGGAAATGATAAAACCA 2316
|||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||| |||
Sbjct 2415 GATTATAGTCGCTGTGTCGCCATTGTCGCATCTGCAGCTTTAAGGGAAATGATAAAGCCA 2474
Query 2317 GGAGCTTTGGCTATAATATCACCCATTGCAGTTGGTTTTGTGTTCCGGATCTTGGGATAC 2376
|||||||| ||||| ||||||||||| ||||||||| || || ||||| ||||| |||
Sbjct 2475 GGAGCTTTAGCTATTGCATCACCCATTGTAGTTGGTTTGGTTTTTCGGATTTTGGGTTAC 2534
Query 2377 TACACTGGACAACCTTTGCTTGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCGACA 2436
||||| ||||||||| |||| ||||| ||||| |||||| | ||||| |||||||| |||
Sbjct 2535 TACACAGGACAACCTCTGCTCGGAGCAAAAGTTGTAGCTTCTATGCTCATGTTTGCAACA 2594
Query 2437 GTATGTGGTATCTTAATGGCTCTATTCTTAAATACAGCAGGAGGTGCTTGGGACAATGCA 2496
|| ||||||||||||||||| || ||| |||| || || |||||||||||||||||||||
Sbjct 2595 GTTTGTGGTATCTTAATGGCACTTTTCCTAAACACGGCGGGAGGTGCTTGGGACAATGCA 2654
Query 2497 AAGAAATACATTGAGACTGGAGCTCTAGGAGGCAAAGGAAGTGATTCCCACAAAGCTGCA 2556
||||||||||| |||||||| || || || || ||||||||||| |||||||||| ||
Sbjct 2655 AAGAAATACATAGAGACTGGGGCACTTGGGGGGAAAGGAAGTGAAGCCCACAAAGCAGCT 2714
Query 2557 GTAACTGGTGATACTGTGGGAGACCCTTTCAAGGACACAGCAGGACCGTCGATTCACGTT 2616
|| ||||||||||| |||||||| || |||||||||||||| || || || ||||||||
Sbjct 2715 GTGACTGGTGATACCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTC 2774
Query 2617 CTCATCAAAATGTTGGCGACTATCACGCTTGTCATGGCTCCTATCTTTC-TCTGAAA 2672
||||| |||||| | |||||||| || || ||||||||||| | |||| |||||||
Sbjct 2775 CTCATAAAAATGCTCGCGACTATAACTCTCGTCATGGCTCCGGT-TTTCCTCTGAAA 2830
> Ahg920584 jgi|Araly1|920584|scaffold_101865.1
Length=1355
Score = 1153 bits (624), Expect = 0.0
Identities = 660/678 (97%), Gaps = 0/678 (0%)
Strand=Plus/Plus
Query 1375 GGAACTCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCAATGGTTGTTCTTCAGAAA 1434
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 72 GGAACTCGCAATGCTAGTGTGAAATCTCCAGTAGAGGATCCAATGGTTGTGCTTCAGAAA 131
Query 1435 GGATATTCGCTGACTATTATATTAGCTGTTTTGACATTTGGCGCGTCGACTCGCTGGCTG 1494
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 132 GGATATTCGCTGACTATTATATTAGCCGTTTTGACATTTGGCGCGTCGACTCGCTGGCTG 191
Query 1495 CTATACACAGAACAAGCTCCATCTGCTTGGTTGAATTTCTTCATGTGTGGCTTAGTTGGC 1554
|| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 192 CTTTACACAGAACAAGCTCCATCTGCTTGGGTGAATTTTTTCATGTGTGGCTTGGTTGGC 251
Query 1555 ATTATCACAGCCTATGTCTTTGTCTGGATATCCAGATATTATACTGACTATAAGTATGAG 1614
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 252 ATTATCACAGCCTATGTCTTTGTCTGGATATCCAGATATTCTACTGACTATAAGTATGAG 311
Query 1615 CCTGTTCGGACGTTGGCTCTTGCTAGCTCCACTGGTCATGGAACCAATATAATTGCTGGG 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CCTGTTCGGACGTTGGCTCTTGCTAGCTCCACTGGTCATGGAACCAATATAATTGCTGGG 371
Query 1675 GTCAGCTTGGGTCTGGAATCCACGGCTCTTCCTGTTTTGGTTATAAGTGTAGCTATCATT 1734
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 372 GTCAGCTTGGGTCTGGAGTCCACGGCTCTTCCTGTTTTAGTTACAAGTGTAGCTATCATT 431
Query 1735 TCTGCTTTTTGGCTGGGCAATACCTCGGGACTAATAGATGAAAAGGGAAACCCCACTGGA 1794
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 432 TCTGCTTTTTGGCTGGGCAATACCTCGGGACTAATGGATGAAAAGGGAAACCCCATTGCA 491
Query 1795 GGTCTATTTGGAACAGCTGTAGCTACAATGGGAATGTTGAGCACTGCAGCTTATGTTCTT 1854
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 492 GGTCTATTTGGAACAGCTGTAGCTACAATGGGAATGCTGAGCACTGCAGCTTATGTTCTT 551
Query 1855 ACAATGGACATGTTTGGTCCCATAGCTGATAATGCAGGTGGGATTGTTGAGATGAGCCAG 1914
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 552 ACAATGGACATGTTTGGTCCTATAGCTGATAATGCAGGTGGGATTGTTGAGATGAGCCAG 611
Query 1915 CAGCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCTGTTGGGAATACCACAAAA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CAGCCAGAAAGTGTCCGTGAGATCACTGATGTTCTTGATGCTGTTGGGAATACCACAAAA 671
Query 1975 GCAACAACAAAAGGGTTTGCTATTGGATCTGCTGCCCTTGCATCATTCCTTCTTTTTAGT 2034
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 672 GCAACAACAAAAGGGTTTGCTATTGGATCTGCAGCCCTTGCATCATTCCTTCTTTTTAGT 731
Query 2035 GCGTATATGGACGAGGTT 2052
|| |||||||| ||||||
Sbjct 732 GCCTATATGGATGAGGTT 749
Score = 1029 bits (557), Expect = 0.0
Identities = 594/612 (97%), Gaps = 2/612 (0%)
Strand=Plus/Plus
Query 2080 GAGGTTGATATTGCGATCCCAGAAGTCTTCATTGGAGGGTTATTAGGTGCCATGCTTATA 2139
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 744 GAGGTTGATATTGCGATCCCAGAAGTCTTCATCGGTGGGTTATTAGGTGCCATGCTTATA 803
Query 2140 TTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTCAAC 2199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TTCCTGTTTAGCGCTTGGGCTTGTGCAGCAGTTGGTCGAACTGCACAGGAGGTTGTCAAT 863
Query 2200 GAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGGACTACAAGGAGAAGCCAGAT 2259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GAAGTAAGAAGACAGTTCATTGAGAGGCCTGGCATAATGGACTACAAGGAGAAGCCAGAT 923
Query 2260 TATGGTCGATGTGTCGCCATTGTCGCATCTTCAGCTTTGAGGGAAATGATAAAACCAGGA 2319
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TATGGTCGATGTGTTGCCATTGTCGCATCTTCAGCTTTGAGGGAAATGATAAAACCAGGA 983
Query 2320 GCTTTGGCTATAATATCACCCATTGCAGTTGGTTTTGTGTTCCGGATCTTGGGATACTAC 2379
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 984 GCTTTGGCTATAATATCACCCACTGCAGTTGGTTTTGTGTTCCGGATCTTGGGATACTAC 1043
Query 2380 ACTGGACAACCTTTGCTTGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCGACAGTA 2439
|| ||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1044 ACAGGACAACCTCTGCTAGGAGCTAAAGTAGTAGCTGCAATGCTAATGTTTGCAACGGTG 1103
Query 2440 TGTGGTATCTTAATGGCTCTATTCTTAAATACAGCAGGAGGTGCTTGGGACAATGCAAAG 2499
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TGTGGTATCTTAATGGCTCTTTTCTTAAATACAGCAGGAGGTGCTTGGGACAATGCAAAG 1163
Query 2500 AAATACATTGAGACTGGAGCTCTAGGAGGCAAAGGAAGTGATTCCCACAAAGCTGCAGTA 2559
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1164 AAATACATTGAGACAGGAGCTCTAGGAGGCAAAGGAAGTGATTCTCATAAAGCTGCAGTA 1223
Query 2560 ACTGGTGATACTGTGGGAGACCCTTTCAAGGACACAGCAGGACCGTCGATTCACGTTCTC 2619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 ACTGGTGATACTGTGGGAGACCCTTTCAAGGACACAGCAGGACCGTCGATTCACGTTCTC 1283
Query 2620 ATCAAAATGTTGGCGACTATCACGCTTGTCATGGCTCCTATCTTTCTCTGA-AAAAA-GA 2677
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 1284 ATCAAAATGTTGGCGACTATCACGCTTGTCATGGCTCCAATCTTTCTCTGATAAAAAAGA 1343
Query 2678 CATCTAATCCTT 2689
||||||||||||
Sbjct 1344 CATCTAATCCTT 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107147859185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5