BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16810.1
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471877 jgi|Araly1|471877|fgenesh2_kg.1__1831__AT1G16810.2 974 0.0
> Ahg471877 jgi|Araly1|471877|fgenesh2_kg.1__1831__AT1G16810.2
Length=626
Score = 974 bits (527), Expect = 0.0
Identities = 594/627 (95%), Gaps = 2/627 (0%)
Strand=Plus/Plus
Query 83 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTAAAGCTAAAAGGGAA 142
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTGAAGCTAAAAGGGAA 60
Query 143 GGCTTTGGATGTGAAAGCAGGTGGAGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 202
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTTTGGATGTGAAAGCAGGTGGCGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 120
Query 203 ACAAGCTCTTAAAATTACTGATCATGAACTCATAGAAGGAGAAAGCACTGAAGCATTGGG 262
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 121 ACAAGCCCTTAAAATTACTGAACATGAACTCATAGAAGGAGAAAGCACAGAAGCATTGGG 180
Query 263 TAAATTGATTGAAGGAGAAGAAGGAGATGAAGAAA-TGAACAGGAGTGAAAAGGCAAGCG 321
||||||||||||||||||||||| || |||||||| || ||||||||| ||||| ||||
Sbjct 181 TAAATTGATTGAAGGAGAAGAAGAAGGTGAAGAAATTG-GCAGGAGTGATAAGGCGAGCG 239
Query 322 AGGATGCGAAGTTGCAGCAGCAGCTCGATGATGATGATCACTTAACGCCAGCAGAAAGGC 381
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 240 AGGATGCGAAGTTGCAGCAGCAGCACGATGATGATGATCTCTTAACGCCAGCAGAAAGGC 299
Query 382 GATACATAGAGCAGAAACAAAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAGT 441
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 300 GATACATAGAACAGAAACAGAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAAT 359
Query 442 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 419
Query 502 ATATCCCTAAAGTCGGACCTGGTTAATATAATTCTTTCTTGTCTTTGTTTTACTCTGCTT 561
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 420 ATATCCCTAAAGTCGGACCTGGTTAATATTATACTTTCTTGGCTTTGTTTTACTCTGCTT 479
Query 562 ATCTATTTTGCATCGTTAAACGACTACTTTGGATGTCTGTTATGTTTAGTCCCTTTAACT 621
|||||||| |||| ||||||| ||||||||||||||||| |||| ||||||||| |||||
Sbjct 480 ATCTATTTGGCATTGTTAAACAACTACTTTGGATGTCTGCTATGCTTAGTCCCTATAACT 539
Query 622 TTTGAATGATGTGATCGCAAATCTGTAATGTCAAAAACACATTTTCTTGGAATATTTCTT 681
||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 TTTCAATTATGTGATCGCCAATCTGTAATGTCAAAAACACATTTTCTTGGAATAATTCTT 599
Query 682 CTGCATTTCTCAACTTCTTTaaaaaaa 708
||||||||||||| ||| |||| ||||
Sbjct 600 CTGCATTTCTCAATTTCCTTAATAAAA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26800410651
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5