BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16820.1
Length=646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435 289 2e-77
Ahg939397 jgi|Araly1|939397|scaffold_503588.1 141 6e-33
Ahg950479 jgi|Araly1|950479|scaffold_802366.1 137 8e-32
Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693 135 3e-31
Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220 130 1e-29
> Ahg312655 jgi|Araly1|312655|fgenesh1_pm.C_scaffold_1001435
Length=255
Score = 289 bits (156), Expect = 2e-77
Identities = 239/274 (87%), Gaps = 26/274 (9%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAGGTATGAGTTGCGATA-T-GGATA-CGAACTATGACAAATTCTCCCCT 117
||||||||||||||||||| ||| || | | ||||| | |||||||| ||||||| ||||
Sbjct 61 AAGGCCGAGAAAGGTATGATTTG-GA-AGTTGGATATC-AACTATGATAAATTCTGCCCT 117
Query 118 TCCTACAAATCCGTGTGGATGATGCGTAACATTATTCATTTCTACAACTTGGCCAATCAG 177
| ||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 118 TTCTACAAATCCGTGTGGATG--G--T----T-ATTCATTTCTACAACTTGGCCAATCAG 168
Query 178 -GC-TATTGACAGAGCAGCTGGAGTGGATGGCTCAGACGGTTACTTACACTCTCATCAAA 235
| || | | | | || |||| ||||||| ||||| | ||||||||||||||||||||
Sbjct 169 AGAGTA--G-CTG-G-AG-TGGA-TGGATGG-TCAGAAGATTACTTACACTCTCATCAAA 220
Query 236 CATCGCTTGGGAGATCTTTTCTACCGCTTAGTGT 269
|||||||||| |||||||||||||| ||||||||
Sbjct 221 CATCGCTTGG-AGATCTTTTCTACCTCTTAGTGT 253
> Ahg939397 jgi|Araly1|939397|scaffold_503588.1
Length=376
Score = 141 bits (76), Expect = 6e-33
Identities = 78/79 (99%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGACCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
Query 61 AAGGCCGAGAAAGGTATGA 79
|||||||||||||||||||
Sbjct 84 AAGGCCGAGAAAGGTATGA 102
> Ahg950479 jgi|Araly1|950479|scaffold_802366.1
Length=211
Score = 137 bits (74), Expect = 8e-32
Identities = 80/83 (96%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGACCCACATACCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 83
Query 61 AAGGCCGAGAAAGGTATGAGTTG 83
||||||||||||||||||| |||
Sbjct 84 AAGGCCGAGAAAGGTATGAATTG 106
> Ahg898727 jgi|Araly1|898727|Al_scaffold_0005_2693
Length=552
Score = 135 bits (73), Expect = 3e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 61 AAGGCCGAGAAAG 73
> Ahg896254 jgi|Araly1|896254|Al_scaffold_0005_220
Length=420
Score = 130 bits (70), Expect = 1e-29
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCCACATATCAAATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAA 60
Query 61 AAGGCCGAGAAAG 73
|||||||||||||
Sbjct 61 AAGGCCGAGAAAG 73
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23674331457
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5