BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16830.1
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911486 jgi|Araly1|911486|Al_scaffold_0001_1740 2700 0.0
> Ahg911486 jgi|Araly1|911486|Al_scaffold_0001_1740
Length=2226
Score = 2700 bits (1462), Expect = 0.0
Identities = 1739/1869 (93%), Gaps = 33/1869 (2%)
Strand=Plus/Plus
Query 1 GATCTTAGCGTCACGAGTAAGATGCTATGGAGATGCAATTGGGTGAAGCAGAGGAAGAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 370 GATCTTAGCGTCACGAGTAAGATGCTATGGAGATGCAATTGGGTGAAGCAGAGGAAGAAA 429
Query 61 ATCCTTAACACACTCAGTTTCTCTTCGA-TTCACGGTCAATA---TC---------CT-C 106
|||||||||||||||||||||||||| | ||||||||||||| || || |
Sbjct 430 ATCCTTAACACACTCAGTTTCTCTTC-AGTTCACGGTCAATATTCTCTGGAAAATACTGC 488
Query 107 -GGG---AGTA-TACTGCCGCGAAGCCACTCACGCACGATAATGTGTATTCTTGTTTACG 161
||| ||| || ||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 489 TGGGCCTCGTAGTATTGCTTCGAAGCCACTCACGCACGATAATGTGTATTCGTGTTTACG 548
Query 162 AGAATCTCCAGCTGATCTCAAAACTTTGAATTTCTTCTTCTGGTGCGCGAAGCAGAACAA 221
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 549 AGAATCTCCATCTGATCTCAAAACTTTGAATTTCTTCTTCTGGTGCGCGAGGCAGAACAA 608
Query 222 TTACTTCCACGATGATCGAGCATTTGATCACATGGTTGGTGTTGTTGAGAAACTAACTCG 281
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 609 TTACTTCCACGATGATCGAGCATTTGATCACATGGTTGGTGTTGTTGAGAAGCTAACTCG 668
Query 282 TGAATACTATAGCATTGATCGAATCATAGA-GAGATTGAAAATCTCTGGTTGTGAGATTA 340
|||||||||||||||||||||||||||||| ||| |||||| | | ||||||||||||||
Sbjct 669 TGAATACTATAGCATTGATCGAATCATAGAGGAG-TTGAAAGTATATGGTTGTGAGATTA 727
Query 341 AGCCTCGGGtttttttGTTGTTGCTGGAAATATTTTGGCGTGGCCATATCTATGATAAGG 400
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 728 AGCCTCGGGTTTTTTTGTTATTGCTGGAAATCTTTTGGCGTGGCCATATCTATGATAAGG 787
Query 401 CTATTGAGGTTTACACTGGCATGAGTAGTTTTGGATTTGTGCCCAACACTCGTGCCATGA 460
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 788 CTATTCAGGTTTACACTGGCATGAGTAGTTTTGGATATGTGCCCAACACTCGTGCCATGA 847
Query 461 ATATGATGATGGATGTTAATTTCAAACTCAATGTTGTTAATGGAGCTCTGGAAATTTTTG 520
|||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 848 ATATGATGATGGATGTCAATTTCAAAGTCAATCTTGTTAATGGAGCTCTGGAAATTTTTG 907
Query 521 AAGGAATCCGTTTTCGAAATTTCTTTAGTTTCGACATTGCATTGAGTCATTTTTGCAGTA 580
||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 908 AAGGAATCCGTTTTCGAAATTTCTTTAGTTTTGATATTGCATTGAGTCATTTTTGC---- 963
Query 581 GAGGGGGTAGAGGGGATTTGGTTGGTGTGAAGATAGTTTTGAAGAGAATGATTGGAGAAG 640
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 -A----GTAGAGGGGATTTGGTTGGTGTGAAGATAGTTTTGAAGAGAATGATTGGAGAAG 1018
Query 641 GTTTTTATCCTAACAGAGAGAGGTTTGGGCAGATTCTTAGGCTGTGCTGTAGAACAGGCT 700
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTTTTTATCCTAACACTGAGAGATTTGGGCAGATTCTTAGGCTGTGCTGTAGAACAGGCT 1078
Query 701 GCGTCTCTGAAGCATTTCAAGTAGTTGGATTGATGATTTGTAGTGGAATCTCTGTATCTG 760
||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1079 GCGTCGCTGAAGCGTTTCAAGTAGTTGGATTGATGATATGTAGTGGAATCTCTGTGTCTG 1138
Query 761 TTAATGTATGGAGCATGTTGGTTAGCGGGTTTTTTCGTTCAGGAGAGCCGCAAAAGGCGG 820
||||||| ||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1139 TTAATGTCTGGAGTATGTTGGTTAGTGGTTTTTTTCGTTCAGGAGAACCGCAAAAGGCGG 1198
Query 821 TTGATCTGTTCAATAAGATGATTCAGATTGGTTGCTCACCTAATCTTGTGACGTATACTA 880
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1199 TTGATCTGTTCAATAAGATGATTCAGATCGGTTGCTTTCCTAATCTTGTGACGTATACTA 1258
Query 881 GTTTGATCAAAGGGTTTGTGGATTTAGGAATGGTTGATGAAGCGTTTACCGTGCTAAGTA 940
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1259 GTTTGATCAAAGGGTTTGTGGATTTAGGAATGGTTGAAGAAGCGTTTACCGTGCTAAGTA 1318
Query 941 AAGTGCAATCTGAAGGTTTAGCTCCAGATATTGTTCTTTGCAATTTGATGATACACACGT 1000
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 AAGTGCAATCTGAAGGTTTAGCTCCAGATATTGTTCTTTGCAATTTGATGATACACACAT 1378
Query 1001 ACACAAGACTCGGAAGATTCGAAGAAGCTCGTAAGGTTTTCACTAGTTTGGAAAAAAGGA 1060
|||||||||||||||||||||||||||||| || |||||| | |||||| |||||||||
Sbjct 1379 TCACAAGACTCGGAAGATTCGAAGAAGCTCGCAACGTTTTCGCCAGTTTGAAAAAAAGGA 1438
Query 1061 AACTTGTGCCGGATCAGTATACTTTTGCATCAATACTGTCTAGTCTATGTTTGTCTGGGA 1120
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1439 AACTTGTGCCGGATCAGTATACTTTTGTTTCAATACTGTCTAGTCTATGTTTGTCAGGGG 1498
Query 1121 AGTTTGATCTCGTTCCTAGGATCACCCACGGTATAGGAACAGATTTTGATCTGGTTACTG 1180
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1499 AGTTCGATCTCGTTCCTAGGATCACCCATGGTATAGGAACAGATTTTGATCTGGTTACTG 1558
Query 1181 GAAACTTGCTCTCAAACTGTTTCAGCAAGATTGGTTACAATTCGTACGCTTTGAAAGTAC 1240
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1559 GAAACTTGCTCTCAAACTGTTTCAGCAAGATTGGTTACTATTCGTACGCGTTGAAAGTAC 1618
Query 1241 TCAGCATCATGTCTTACAAAGATTTTGCTTTGGATTGTTATACATATACTGTGTATCTTA 1300
|| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1619 TCGGCATCATGTCTAACAAAGATTTAGCTTTGGATTGTTATACATATACTGTGTATCTTA 1678
Query 1301 GTGCACTTTGTCGAGGAGGAGCACCTCGCGCTGCCATTAAGATGTATAAAATAATAATCA 1360
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1679 CTGCGCTTTGTCGAGGAGGAGCACCTCGCGCTGCCATTAAGATGTATGAAATAATAACCA 1738
Query 1361 AGGAGAAAAAACATCTCGATGCTCATTTTCATTCTGCGATAATCGACAGTCTTATAGAGC 1420
|||||| | |||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1739 GGGAGAACAGACATCTTGGTGCTCATTTTCATTCTGCAATAATCGACAGTCTTATAGAGC 1798
Query 1421 TTGGTAAATACAATACCGCGGTTCATTTGTTTAAACGATGCATCTTGGAGAAGTATCCTT 1480
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TTGGTAGATACAATACCGCGATTCATTTGTTTAAACGATGCATCTTGGAGAAGTATCCTT 1858
Query 1481 TAGATGTTGTGTCGTATACAGTAGCTATTAAGGGGCTTGTGCGTGCGAAAAGGATCGAGG 1540
||||||| ||||| | |||||||||||||||||| ||| |||| |||||||||||||| |
Sbjct 1859 TAGATGTAGTGTCATTTACAGTAGCTATTAAGGGACTTATGCGCGCGAAAAGGATCGATG 1918
Query 1541 AAGCCTATTCTTTGTGTTGCGACATGAAAGAAGGTGGGATTTATCCGAATCGACGGACTT 1600
|||| | |||| |||||| ||||||||||||| |||||||| |||||||||| | ||||
Sbjct 1919 AAGCTTGTTCTCTGTGTTCCGACATGAAAGAAAATGGGATTTTTCCGAATCGAAGAACTT 1978
Query 1601 ATCGGACTATTATTTCTGG-TCTGTGCAAGGAGAAGGAGACTGAGAAAGTGAGAAAGATT 1659
||||||||||||| ||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 1979 ATCGGACTATTATATCTGGAT-TGTGCAAGGAGAAGGAGACTGAGAAAGTGAAAAAGATT 2037
Query 1660 TTGAGGGAATGCATCCAGGAGGGAGTTGAGTTGGATCCTAATACTAAGTTTCAAGTGTAT 1719
||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
Sbjct 2038 TTGAGGGAATGCATCGAGGAAGGAGTTGAGTTGGATCCTAATACTAAGTTTAAAGTGTTT 2097
Query 1720 AGTCTCTTGTCTCGATATCGCGGAGACTTTTCTGAATTTAGATCGGTTTTCGAGAAATGG 1779
||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||
Sbjct 2098 AGTCTCTTGTCTCGATACCGGGGAGACTTTTCTGAATTTAGATCTGTTTTTGAGAAATGG 2157
Query 1780 AAATCGGAATTTACAGAAAATGTGGATGTTTCCGATTCCGACGATGAATTATTTGTTTCT 1839
||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 2158 AAATCGGAATTTACAGAGAACATGGATGTTTCTGATTCCGACGATGAATTATTTGTTTCT 2217
Query 1840 GTTGGTTGA 1848
|||||||||
Sbjct 2218 GTTGGTTGA 2226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69400426390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5