BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16840.4
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471880 jgi|Araly1|471880|fgenesh2_kg.1__1834__AT1G16840.1 773 0.0
> Ahg471880 jgi|Araly1|471880|fgenesh2_kg.1__1834__AT1G16840.1
Length=805
Score = 773 bits (418), Expect = 0.0
Identities = 479/509 (94%), Gaps = 2/509 (0%)
Strand=Plus/Plus
Query 47 GATAATGGCTCGATCTTTCTCTCGTTCACTTTCTCTATCCAAAGGCCGTTTCGCCGCCGC 106
||| |||||||||||| | |||||||||||||||||||| ||||||||| |||||||||
Sbjct 70 GATGATGGCTCGATCTCTATCTCGTTCACTTTCTCTATCTAAAGGCCGTGTCGCCGCCGG 129
Query 107 GTCATCCTCTCTCCTCCCTTCGTCGCACCTTGTTTCATTCCGATCTCAATCTTCCGATCG 166
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 130 GTCATCCTCTCTTCTCCCTTCGTCACAACTTGTTTCATTCCGATCTCAATCTTCCGATCG 189
Query 167 TCGGGGAGATCTGTACGAGATTGATACCTCCGCGGCTTCTCAATCGCCGTCGGATCCTTT 226
||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 190 TCGGGGAGATCTGTACGAGATTGATACAGCCGCGGCCTCGCAATCGCCGTCGGATCCTTT 249
Query 227 AATACAGAAGCTAGAAGACGCCGTTCACCGGATTTTTGTGCGCCGAGCTCAGCCTGATTG 286
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 250 AATACAGAAGCTAGAGGACGCCGTTCACCGGATATTTGTGCGCCGAGCTCAACCTGATTG 309
Query 287 GCTCCCTTTTGTTCCTGGTGCGTCTTATTGGGTCCCTCCTCCTGGATCTGGATCTCAGTC 346
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 310 GCTCCCTTTTGTTCCTGGTGCGTCTTATTGGGTCCCGCCTCCTGGATCTGGATCTCAGTC 369
Query 347 TCATGGAATCGCTCAGCTCGTTGTGAAACTCGCGAATCCGTTAACACACGAAGAATCTTT 406
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 370 TCATGGAATCGCTCAGCTCGTTGTGAAACTCGCGAATCCGTTAACCCACGAAGAATCTTT 429
Query 407 ATCTACCAATTCTTCTCATGGATGGCCTTCCTCCGATTATTTCCTTAAAGGTGTTCAACC 466
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 430 ATCTACCAATTCTTCTCATGGATGGCCTTCCTCCGATTATTTCCTTAAAGGTGTACAACC 489
Query 467 TCAATTGATGGAGACCAAGACCGAGACAACTTCAAATTCCGAGTCTCACTCTGAGGACGA 526
||||||||||||||||||||||||| || |||||||| | ||||||||||| ||||||||
Sbjct 490 TCAATTGATGGAGACCAAGACCGAGGCAGCTTCAAATACTGAGTCTCACTCCGAGGACGA 549
Query 527 GGAAGTGTAAAAATGACACTGCTTGTTTG 555
||||| ||||| |||||| ||| ||||
Sbjct 550 GGAAGCGTAAATC-GACACTACTT-TTTG 576
Score = 278 bits (150), Expect = 7e-74
Identities = 188/205 (92%), Gaps = 8/205 (4%)
Strand=Plus/Plus
Query 728 TTCGGACAACCAAGAGCAAGTGAAAAGACGTGAAATAGAACGACCATATTTCTATACCTG 787
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 593 TTCGGACGACCAAGAGCAAGTGCAAAGACGTGAAATAG-ACGACCATATTTCTATACCTG 651
Query 788 ATACCAAAATGTGGAATATCGAATAAGACTAG-TGTTGTAGGCTTGTGTAGCATGTCCCG 846
|| || |||||||||||||||||||||| ||| |||||||||| | |||||||||||||
Sbjct 652 ATCCCGAAATGTGGAATATCGAATAAGAGTAGTTGTTGTAGGC-T-TGTAGCATGTCCCT 709
Query 847 CTGTTTCTCTTTTAAACAGTTGTTGTATATATATATCTCTGTTTCCTTGCTCTTTCACTT 906
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 710 CTGTTTCTCTTTTTCACAGTTGTTG----TATATATCTCTGTTTCCTTGCTCTTTCACTT 765
Query 907 ATTTAACAAAGAGTTCATGTTAATG 931
||||||||||||||| |||||||||
Sbjct 766 ATTTAACAAAGAGTTTATGTTAATG 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5