BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16858.1
Length=2258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920592 jgi|Araly1|920592|scaffold_101873.1 2460 0.0
Ahg477051 jgi|Araly1|477051|fgenesh2_kg.2__2181__AT1G78880.1 1528 0.0
> Ahg920592 jgi|Araly1|920592|scaffold_101873.1
Length=1465
Score = 2460 bits (1332), Expect = 0.0
Identities = 1417/1459 (97%), Gaps = 2/1459 (0%)
Strand=Plus/Plus
Query 398 TTCTTTAAATCACCAAAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGGCTAT 457
|||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 4 TTCTTTAAGTAACCAAAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGACTAT 63
Query 458 TTGTGTCTGGTCGGCCTGAGCAACCCAAAGAAAGGGCTCCAACTATGAGTGCAGTAGCCA 517
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 64 TTGTGTCTGGTCGGCCTGAGCAACCCAAAGAAAGGCCTCCAACTATGAGTGCAGTAGCCA 123
Query 518 TGCCTTACACTGGTGGTGATATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATATTC 577
|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 124 TGCCTTACACGGGTGGCGACATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATATCC 183
Query 578 CAGCAGATGGGACTAAGTCCAGGAAGTCTGGTCCCATACCAGGTGCTCCTTCAAGGTCTG 637
|||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 184 CAGCAGATGGTACTAAGTCTAGGAAGTCTGGTCCCATACCTGGTGCTCCTTCAAGGTCTG 243
Query 638 GCTCATTTGCAGGAACTGCACAATCAGGTCCAGGTGCTCCTATGGCCACTGGCCGTATGT 697
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 244 GCTCATTTGCAGGAACTGCACAATCTGGTCCAGGTGCTCCTATGGCCACTGGCCGTATGT 303
Query 698 CTGGCTCTTTAGCTTCTGCTGGCTCTGTTTCAATGAAGAAAACGAATTCCGGACCATTAT 757
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 304 CTGGCTCTTTAGCTTCTGCTGGCTCTGTTTCAATGAAGAAAACTAATTCCGGACCTTTAT 363
Query 758 CTAAGCATGGAGAGCCTTTGAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGCC 817
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 364 CTAAGCATGGAGAGCCTTTAAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGGC 423
Query 818 AAAATTCTGGTTCTATTCCTATTCTTCCAGCTACAGGTCTCATTACCTCTGGGCCTATTA 877
||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 424 AAAATTCCGGTTCTATTCCTATTCTTCCGGCTACAGGTCTCATAACCTCTGGGCCTATTA 483
Query 878 CATCAGGCCCTCTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTT 937
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CATCGGGCCCTCTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTT 543
Query 938 CTGGTTTGATGAAGTCACATATGCCTACTGTTGTCCACAACCAGGCGGTAACTACCCTTG 997
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 544 CTGGTTTGATGAAGTCACATATCCCTTCTGTTGTCCACAACCAGGCGGTAACTACCCTTG 603
Query 998 GTCCAGAAGATGACTTTTCCTGCCTGAAGAGCTTTCCAAAGCCTGTGCTGTGGCTGGTTG 1057
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 604 GTCCAGAAGATGACTTTTCCTGCCTGAAGAGCTTCCCAAAGCCTGTGCTGTGGCTGGTTG 663
Query 1058 TTCTTATATTCATTATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACC 1117
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTCTTATATTCATAATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACC 723
Query 1118 CAATTCTCCTTGTTGTTGTCGCCATCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGA 1177
|||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 724 CAATTCTCCTCGTTGTTGTCGCGATCTTGTTTACAGTTGTTGCTGCGCTTTTCATTTGGA 783
Query 1178 ATATTTGTTGGGGAAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATC 1237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ATATTTGTTGGGGGAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATC 843
Query 1238 TTAGAACTGCCAAAAATGGTCAACACGTGAAGGTCACTGGGGTGGTAACTTGTGGTAATG 1297
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 844 TTAGAACTGCCAAAAATGGTCAATACGTGAAGGTCACTGGGGTGGTTACTTGTGGTAATG 903
Query 1298 TACCGCTTGAGTCATCCTTCCACAGAGTTCCCAGATGTGTGTACACATCGACATGTCTAT 1357
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 904 TACCGCTTGAGTCATCCTTCCACAGAGTTCCTAGATGTGTGTACACATCGACATGTCTAT 963
Query 1358 ATGAGTATCGTGGATGGGGTTCGAAACCAGCCAATTCTTCCCATCGTCACTTCACATGGG 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 ATGAGTATCGTGGATGGGGTTCGAAACCAGCCAATTCTTCCCATCGTCACTTCACATGGG 1023
Query 1418 GACTGAGATCATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGC 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GACTGAGATCATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGC 1083
Query 1478 TCAGAGCCTTAGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTG 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TCAGAGCCTTAGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTG 1143
Query 1538 TTGTCATCGACTTCAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGT-ACGATGGTTA 1596
|||||||||| || ||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1144 TTGTCATCGATTTTAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGTTA-GATGGTTA 1202
Query 1597 GGCAAGAAGAATCTAACAAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAA 1656
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 AGTAAGAAGAATCTAACAAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAA 1262
Query 1657 GAAGGAAGTACAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATA 1716
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 GAAGGAAGCACAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATA 1322
Query 1717 GTTCCATCATCAGAGCCACTAGCAGCTGGTTGGCAATGGAGGAGATGCACATTCCCAACA 1776
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1323 GTTCCATCATCTGAGCCACTAGCAGCTGGTTGGCAATGGAGGAGATGCACATTCCCTACA 1382
Query 1777 AGTCTTGAAGGAATAGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTT 1836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AGTCTTGAAGGAATCGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTT 1442
Query 1837 TGAGtcatcatcatcatca 1855
|||||||||||||||||||
Sbjct 1443 TGAGTCATCATCATCATCA 1461
> Ahg477051 jgi|Araly1|477051|fgenesh2_kg.2__2181__AT1G78880.1
Length=2243
Score = 1528 bits (827), Expect = 0.0
Identities = 1239/1436 (86%), Gaps = 36/1436 (3%)
Strand=Plus/Plus
Query 413 AAATGGGTTCGAGATACCCATCTCATCAGCTCAGCAATGGGCTATTTGTGTCTGGTCGGC 472
|||||||||| |||||| |||| || ||||||||||||||||| ||||||||||| || |
Sbjct 399 AAATGGGTTCAAGATACGCATCCCACCAGCTCAGCAATGGGCTTTTTGTGTCTGGCCGCC 458
Query 473 CTGAGCAACCCAAAGAAAGGGCTCCAACTATGAG-TGCAGTAGCCATGCCTTACACTGGT 531
| |||||||||||||||| | ||||||| ||||| | | ||||||||||| ||||| |||
Sbjct 459 CAGAGCAACCCAAAGAAAAGCCTCCAACAATGAGCT-CGGTAGCCATGCCATACACCGGT 517
Query 532 GGTGATATCAAGAGATCAGGAGAATTGGGGAAGATGTTTGATATTCCAG-CAGATGGGAC 590
|||||||| |||| |||||||||||| |||||||||||||| ||||| | | ||||||||
Sbjct 518 GGTGATATTAAGAAATCAGGAGAATTAGGGAAGATGTTTGACATTCC-GACTGATGGGAC 576
Query 591 TAAGTCCAGGAAGTCTGGTCCCATACCAGG-TGCTCCTTCAAGGTCTGGCTCATTTGCAG 649
|||||| ||||||||||| |||||| | || | | |||||| | | | |
Sbjct 577 TAAGTCAAGGAAGTCTGGCCCCATAACTGGAGGAT-CTTCAA------G---A--AG-TG 623
Query 650 GAACTGCACAATCAGGTCCAGGTGCTCCT-ATGGCCACTGGCCGTATGTCTGGCTCTTTA 708
| || | |||||||||||| ||| ||| || || ||||| ||||||||||| ||||||
Sbjct 624 GTAC-G--CAATCAGGTCCA-GTG--CCTAAT-GCAACTGGTCGTATGTCTGGTTCTTTA 676
Query 709 GCTTCTGCTGGCTCTGTTTCAATGAAGAAAACGAATTCCGGACCATTATCTAAGCATGGA 768
|||||||||||||| ||||||||||||||| ||||| || || || |||||||| ||
Sbjct 677 GCTTCTGCTGGCTCAAATTCAATGAAGAAAACAAATTCTGGGCCTTTGTCTAAGCACGGG 736
Query 769 GAGCCTTTGAAGAAATCATCTGGCCCTCAATCTGGTGGTGTAACTCGCCAAAATTCTGGT 828
|||||||| |||||||| ||||| || ||||| ||||||||||| | |||||||| ||
Sbjct 737 GAGCCTTTAAAGAAATCCTCTGGTCCGCAATCCGGTGGTGTAACAAGGCAAAATTCCGGC 796
Query 829 TCTATTCCTATTCTTCCAGCTACAGGTCTCATTACCTCTGGGCCTATTACATCAGGCCCT 888
|||||||||| || ||| ||||||||||||| || |||||||| ||||| || ||||||
Sbjct 797 CCTATTCCTATACTCCCAACTACAGGTCTCATAACATCTGGGCCAATTACCTCGGGCCCT 856
Query 889 CTGAATTCATCTGGGGCTCCCAGGAAGGTTTCTGGTCCACTAGACTCTTCTGGTTTGATG 948
|| ||||||||||||||||| ||||| |||||||||| ||||||| |||||||| ||||
Sbjct 857 CTAAATTCATCTGGGGCTCCTAGGAAAATTTCTGGTCCTCTAGACTATTCTGGTTCGATG 916
Query 949 AAGTCACATATGCCTACTGTTGTCCACAACCAGGCGGTAACTACCCTTGGTCCAGAAGAT 1008
||| ||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 917 AAGACACATATGCCTTCAGTTGTCCACAACCAGGCGGTAACTACCCTTGCTCCGGAAGAT 976
Query 1009 GACTTTTCCTGCCTGAAGAGCTTTCCAAAGCCTGTGCTGTGGCTGGTTGTTCTTATATTC 1068
|||||||||||| |||||||||| || ||||||||||||||||||||| | ||||||||
Sbjct 977 GACTTTTCCTGCATGAAGAGCTTCCCCAAGCCTGTGCTGTGGCTGGTTATACTTATATTT 1036
Query 1069 ATTATGGGGTTCCTTGCTGGAGGCTTCATTCTTGGTGCAGTTCACAACCCAATTCTCCTT 1128
| ||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 1037 GTAATGGGGTTCCTCGCTGGAGGGTTCATTCTTGGAGCAGTTCACAATGCAATTCTCCTC 1096
Query 1129 GTTGTTGTCGCCATCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGAATATTTGTTGG 1188
||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1097 ATTGTTGTTGCGATCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGAATATTTCTTGT 1156
Query 1189 GGAAGACGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATCTTAGAACTGCC 1248
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GAAAGGCGTGGTATCACAGATTTCATTGCTCGTTATCCTGATGCTGATCTTAGAACTGCC 1216
Query 1249 AAAAATGGTCAACACGTGAAGGTCACTGGGGTGGTAACTTGTGGTAATGTACCGCTTGAG 1308
||||| |||||| | |||||||||||||||||||| ||||||||||| || || || ||
Sbjct 1217 AAAAACGGTCAATATGTGAAGGTCACTGGGGTGGTCACTTGTGGTAACGTGCCTCTGGAA 1276
Query 1309 TCATCCTTCCACAGAGTTCCCAGATGTGTGTACACATCGACATGTCTATATGAGTATCGT 1368
||||||||||| ||||||||||||||||| ||||| || || |||||||||||||| |||
Sbjct 1277 TCATCCTTCCATAGAGTTCCCAGATGTGTTTACACGTCTACTTGTCTATATGAGTACCGT 1336
Query 1369 GGATGGGGTTCGAAA-CCAGCCAATTCTTCCCATCGTCACTTCACATGGGGACTGAGATC 1427
||||||||||| ||| ||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 1337 GGATGGGGTTC-AAAGCCAGCCAATGCTTCACATCGTCGCTTCACATGGGGACTGAGATC 1395
Query 1428 ATCAGAGAGACATGTGGTGGACTTTTACATCTCTGATTTCCAGTCTGGGCTCAGAGCCTT 1487
| ||||||| |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 1396 AGCAGAGAGGCATGTGGTAGACTTCTACATTTCTGATTTCCAATCTGGGCTCAGAGCATT 1455
Query 1488 AGTCAAAACCGGAAGCGGTGCAAAGGTAACACCTCTTGTAGATGATTCTGTTGTCATCGA 1547
|||||||| |||| ||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1456 GGTCAAAACTGGAAACGGTGCAAAGGTAACACCTCTCGTCGATGATTCTGTTGTCATCGA 1515
Query 1548 CTTCAAGCAAGGAAGCGAGCAAGTGTCTCCCGATTTTGTACGATGGTTAGGCAAGAAGAA 1607
|| | || ||| || ||||||| ||||| || |||||| | ||||| || || |||||
Sbjct 1516 TTTTAGGCCAGGGAGTGAGCAAGCCTCTCCAGACTTTGTAAGGTGGTTGGGTAAAAAGAA 1575
Query 1608 TCTAAC-AAGCGATGATCGAATAATGCGGCTCAAAGAAGGGTATATAAAAGAAGGAAGTA 1666
|||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1576 TCTAACCAAT-GATGATCGAATAATGCGGCTTAAAGAAGGGTATATCAAAGAAGGAAGTA 1634
Query 1667 CAGTGAGTGTGATTGGAGTGGTGCAGAGAAACGATAATGTGTTGATGATAGTTCC-ATC- 1724
|||||||||||||||||||||| |||||||||||||| ||||| |||||||| || | |
Sbjct 1635 CAGTGAGTGTGATTGGAGTGGTTCAGAGAAACGATAACGTGTTAATGATAGTCCCGA-CG 1693
Query 1725 ATCAGAGCCACTAGCAGCTGGTTGGCAATGGAGGA-GATGCACATTCCCAACAAGTCTTG 1783
| |||| ||| |||||||||||||||||||||| | | ||||||||||| |||||||||
Sbjct 1694 A-CAGAACCATTAGCAGCTGGTTGGCAATGGAGTAAG-TGCACATTCCCTGCAAGTCTTG 1751
Query 1784 AAGGAATAGTATTGAGATGTGAAGACTCATCCAATGTTGATGCCATACCGGTTTGA 1839
||||||| ||||||||||| ||||| ||||| || || || || || || || |||
Sbjct 1752 AAGGAATTGTATTGAGATGCGAAGATTCATCGAACGTAGACGCAATTCCTGTCTGA 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85017426840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5