BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16870.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471887 jgi|Araly1|471887|fgenesh2_kg.1__1841__AT1G16870.1 2780 0.0
> Ahg471887 jgi|Araly1|471887|fgenesh2_kg.1__1841__AT1G16870.1
Length=1701
Score = 2780 bits (1505), Expect = 0.0
Identities = 1643/1707 (96%), Gaps = 19/1707 (1%)
Strand=Plus/Plus
Query 76 AGAGATACGAACCAGAGAAATGTGGAAGTACGGT-TTAAGAATCGCCGCCGGGAATGCCA 134
||||||||||||||||||||||||||||| | || |||||||||||||||||||| ||
Sbjct 1 AGAGATACGAACCAGAGAAATGTGGAAGTTC-GTCGGAAGAATCGCCGCCGGGAATGTCA 59
Query 135 AATTGAATCGGAAGTCTTCGATTCTAAATAATACCGTTTGTCATTTCTCACCTCCGACTT 194
|||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 60 AATTGAATCGGAGGTCTTCGATTCTAAATGATACCGTTTGTCATTTCTCACCGCCGACTT 119
Query 195 CAGCCGCCGTGGGAACACTTTTCCCGAGTTTAGATCACGTTCATCG-ATGCTTTTCATCT 253
|||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||
Sbjct 120 CAGCCGCCGTGGGAACACTTTTTCCGAGTTTAGATCACGTCCATCGCA-GCTTTTCATCT 178
Query 254 TCGAAGAGCACGAAATCTTCAATCACCAAAACGAAGAAATCTGAAGGCAAAAAATCCAAA 313
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 179 TCGAAGAGCACGAAATCTTCAATAACCAAGACGAAGAAATCTGAAGGCAAAAAATCCAAA 238
Query 314 CCTAAAGGCGGCGATCCTGGTGCCGCCGGAGCTGAGGAAGGAGAGTTTGGAGCCGCCGGT 373
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 239 CCTAAAGGCGGCGATCCTGGTGCTGCCGGAGCCGAGGACGGAGAGTTTGGAGCCGCCGGT 298
Query 374 GGAGACGACCTTGAAGCGGGTCGTGCCAAGAGACTAGCTGATGATGAGAAGATTCCGTCT 433
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGAGATGACCTCGAAGCGGGTCGTGCCAAGAGACTAGCTGATGATGAGAAGATTCCGTCT 358
Query 434 CTAGATGTTGGTCCTAATGGAAGGCCTCTCTTTACTCCCAAAGATACTACACTATCGCAG 493
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 359 TTAGATGTTGGTCCTAATGGAAGGCCTCTCTTTACTCCCAAAGATACTACACTTTCGCAG 418
Query 494 CTGA-CTCACAAGGATATTGGCTCCTACTTCAAATTCGATGAGGCAGCACTGAAAGCAGT 552
|| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 CT-ATCTCACAAGGATATTGGCTCCTACTTCAAATTCGATGAGGCAGCATTGAAAGCAGT 477
Query 553 TCTGCCGGAAGGATTAGCTTCAGGAATTGAAGATGAGTTTAATGAATCATGGAGACCTGC 612
||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 478 TCTTCCGGAGGGATTAGCTTCAGGGATTGAAGATGAGTTCAATGAATCATGGAGACCTGC 537
Query 613 ATTGCTTGTCAGAAAAAGTTACTTGGCTCTGAGGGATAATTTTAGACGCATTGCTGATCC 672
||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 538 ATTGCTTGTGAGAAAAAGTTTCTTGGCTCTGAGGGATAATTTTAGCCGCATTGCTGATCC 597
Query 673 TCCCATGTGGCCAAGTGACAGTAAAGGTGTCAAACTTCAGAAGCAGATTGTCTTGGATGG 732
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 598 TCCCATGTGGCCAAGTGACGGTAAAGGTGTCAAACTTAAGAAGCAGATTGTCTTGGATGG 657
Query 733 CCCTGTTAAGTGTGGAAAGAGTATTGCTCTGGCGATGCTTGTTCACTGGGCACGTGACGA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CCCTGTTAAGTGTGGAAAGAGTATTGCTCTGGCGATGCTTGTTCACTGGGCACGTGACGA 717
Query 793 AGGCTGGTTAGTTTTATATGCACCAAAAGGACGTGACTGGACTCACGGTGGCTACTTCTA 852
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 AGGCTGGCTAGTTTTATATGCACCAAAAGGACGTGACTGGACTCACGGAGGCTACTTCTA 777
Query 853 TAAGAATCCACATACAGGGTTTTGGGACACTCCTCTACAAGCTGAGAATATTCTCAAGGA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TAAGAATCCACATACAGGGTTTTGGGACACTCCTCTACAAGCTGAGAATATTCTCAAGGA 837
Query 913 TTTTGTCAAGTTCAATGAATCCCGCTTAAGAGAGTTACGGTGCAAAATCCATGATCCTAT 972
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 838 TTTTGTCAAGTTCAATGAATCCCGCTTAAGAGAGTTGCGATGCAAAATCCATGATCCTAT 897
Query 973 CGTGCTTGGAGAGGGTGCGGGTGTTGGATACTTGAAAGGAGCAGATGCTATGCCTATTCC 1032
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 898 CGTGCTTGGAGAGGGTGCGGGTGTAGGATACTTGAAAGGAGCAGATACTATGCCGATTCC 957
Query 1033 CGAGGATTCAACTCTGTATGACCTTGTGCAAATGGGAATTAAGAGCACTCATGCAGCTGT 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CGAGGATTCAACTCTGTATGACCTTGTGCAAATGGGAATTAAGAGCACTCATGCAGCTGT 1017
Query 1093 TAATGTCGTTGTGCGACTTAGAAAAGAACTCTCAGTTGTAAAAGATGTACCAGTGTTGAT 1152
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TAATGTCGTAGTGCGACTTAGAAAAGAACTCTCAGTTGTAAAAGATGTACCAGTGTTGAT 1077
Query 1153 TGTAATCGATCAATATAACAGTTGGTTTACATTCAGCGAGTTTGAAGAGCCCGTAACACC 1212
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGTAATTGATCAATATAACAGTTGGTTTACATTCAGCGAGTTTGAAGAGCCCGTAACACC 1137
Query 1213 GCGTTCTTGCCGACCTATACATGCCAGAGAACTTACAACGGTGAATGCTTTCAGAAGCAT 1272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACGTTCTTGCCGACCTATACATGCCAGAGAACTTACAACGGTGAATGCTTTCAGAAGCAT 1197
Query 1273 GATGCATGAAGATATGATGGTGGGTGCATTCTCACATTCAACAGCAGTAGGAAAACTACG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GATGCATGAAGATATGATGGTGGGTGCATTCTCACATTCAACAGCAGTAGGAAAACTACG 1257
Query 1333 CAAAGACTTGCCAGATGTTCCAGTTGATGCTCGTCAGCAATTCCCACGTTATTCTTTGGA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAAGACTTGCCAGATGTTCCAGTTGATGCTCGTCAGCAATTCCCACGTTATTCTTTGGA 1317
Query 1393 TGAAGCAGAAGCTGTCTGCTATTACTACCTTCGGCAAAGACTAGTTCGGCGTGAAGTATT 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TGAAGCAGAAGCTGTCTGCTATTACTACCTTCGGCAAAGACTAGTTCGGCGTGAAGTATT 1377
Query 1453 CAACGAAGAAAACTGGAAGAAGATATACTATCTGGCAAATGGAAATGGAGCAGAGATGCG 1512
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CACCGAAGAAAACTGGAAGAAGATATACTATCTGGCAAATGGAAATGGAGCAGAGATGCG 1437
Query 1513 TTGGTTAG-CCCCTTTCATGCGTTGAGGAACAAT-ATACAAACAAACAAAATAGATTGTG 1570
|||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1438 TTGGTTAGTCCCCTT-CATGCGTTGAGGAACAAACACACAAACAAACAAAATAGATTGTG 1496
Query 1571 ATCTTGATT--T-----GTCGCCTTTTCTGGTGTTTTAAGTTATCCCGTTAGTTTGGGAG 1623
|| |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 ATTTTGATTACTTTAATGTCGCCTTTTCTGGTGTTTTAAGTTATCCCGTTAGTTTGGGAG 1556
Query 1624 AGAAACTCTTTTCATTGACCTTTCTGAATTAAA-GGAAGAtttttgttgtttgagtttgt 1682
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1557 GGAAACTCTTTTCATTGACCTTTCTGAATTAAAAGGAAGATTTTTGTTGTTTGAGTTTAT 1616
Query 1683 agttttaggtttccttgttgtctgtaaaacactggtttttgGACCTAAATTTCTTTCTAA 1742
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 AGTTTTAGGTTT--TTGTTGTCTGTAAAACACTGGTTTTTGGACCTAAATTTCTTTCTAA 1674
Query 1743 TAAAATCAGTGCCTCTCATTTATTATC 1769
||||||||||||||||||||||| |||
Sbjct 1675 TAAAATCAGTGCCTCTCATTTATCATC 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5