BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16880.1
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471888 jgi|Araly1|471888|fgenesh2_kg.1__1842__AT1G16880.1 1801 0.0
> Ahg471888 jgi|Araly1|471888|fgenesh2_kg.1__1842__AT1G16880.1
Length=1194
Score = 1801 bits (975), Expect = 0.0
Identities = 1101/1160 (95%), Gaps = 16/1160 (1%)
Strand=Plus/Plus
Query 78 CTTTTTTATTATCCTCTCATGGCGGATAACACGAGACCTGTCCAAAGGCTCTTCTTCTTC 137
||||||| || | |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 49 CTTTTTT-TT-TTTTCTCATGGCGGATAACACGAGACCTGTCCAAAGG--C-TCTTCTTC 103
Query 138 TTCGTCATCACTACTACTACTCCTCTCTAACGTTTTCCTCATTCTTCTTAATTCCGATTT 197
||| | | | ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 104 TTC-T--T--C-ACTACTAGTCCTCTCTAACGTTTTCCTCATTCTTCTTAATTCCGATAT 157
Query 198 TTGAGTGATGGCTATGGCCTCTGCTTCTGGTTCTGCTCTTTGCTTCACTGATGCTTCTAG 257
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 158 TTGAGTTATGGCTATGGCGTCTGCTTCTGGTTCTGCTCTTTGCTTCACTGATGCTTCTAG 217
Query 258 CTCTCTTGCTTTAAGACGCGATTGTGGAGCTCTTTGCTTGCCTCCTAGGACAGTTACGTT 317
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 218 CTCTCTAGCTTTAAGACGCGATTGTGGAGCTCTTTGCTTGCCTCCTAGGACAATTACGTT 277
Query 318 TGGATTTGTCGATAAACCTCTTGT-CAATCTCGAGCGATTAAGATTATCCACTTTGAAGA 376
|||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||
Sbjct 278 TGGATTTGTCGATAAATCTCTT-TCCAATCTCGAGCGATTAAGATTATCCAGTTTGAAGC 336
Query 377 TTAGAGCATCAAATGCTACTGCTGTGGAGAATGGAAAGCAAGAAGGAAGTGCTGCTGATT 436
| |||||||||||||||||||||| |||||||||||||||| | |||||| |||||||
Sbjct 337 CTCGAGCATCAAATGCTACTGCTGTCGAGAATGGAAAGCAAGGTGAAAGTGCCGCTGATT 396
Query 437 CTGATAAAGTTCCAACTCCAGTTGTTATAATCGACCAAGATTCTGACCCTGATGCAACCG 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 397 CTGATAAAGTTCCAACTCCAGTTGTTATAATCGACCAAGATTCTGACCCTGATGCTACCG 456
Query 497 TTCTTGAAGTTACATTCGGAGATCGTCTTGGAGCTTTACTTGACACTATGAATGCGCTCA 556
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TTCTTGAAGTTACATTTGGAGATCGTCTTGGAGCTTTACTTGACACTATGAATGCGCTCA 516
Query 557 AAAACTTGGGATTGAATGTCGTCAAGGCAAATGTTTACCTTGATTCTTCCGGCAAGCACA 616
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 517 AAAACTTGGGATTGAATGTTGTCAAGGCAAATGTTTACCTCGATTCTTCCGGCAAGCACA 576
Query 617 ACAAATTTGCCATTACTAGAGCAGATAGTGGAAGAAAAGTAGAAGACCCTGAATTGCTTG 676
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 577 ACAAATTTGCCATTACTAAAGCGGATAGTGGAAGAAAAGTAGAAGACCCTGAATTGCTTG 636
Query 677 AGGCCATTCGTCTCACAGTCATAAACAATCTGCTTGAGTTTCATCCTGAATCAAGTTCTC 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AGGCCATTCGTCTCACAGTCATAAACAATCTGCTTGAGTTTCATCCTGAATCAAGTTCTC 696
Query 737 AGTTGGCAATGGGAGCAGCTTTTGGTGTTCTTCCTCCAACTGAACCGATTGACGTGGACA 796
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 697 AATTGGCAATGGGAGCAGCTTTTGGTGTTCTTCCTCCAACTGAACTGATTGATGTGGACA 756
Query 797 TAGCAACACATATAACCATTGAAGATGATGGACCAGACCGCAGTTTACTCTTCATAGAAT 856
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 757 TAGCAACACATATAACCATTGAAGATGATGGACCAAACCGCAGTTTACTCTACATAGAAA 816
Query 857 CAGCGGATAGACCTGGACTATTAGTTGAGCTGGTGAAGATCATTTCAGATATCAGCGTCG 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 CAGCGGATAGACCTGGACTATTAGTTGAGCTGGTGAAGATCATTTCAGATATCAGCGTCG 876
Query 917 CTGTTGAATCTGGAGAATTCGACACCGAGGGTTTGTTGGCTAAGGTGAAGTTTCATGTAA 976
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 877 CTGTTGAATCTGGAGAATTCGACACCGAGGGTTTGTTGGCTAAGGTAAAGTTCCATGTAA 936
Query 977 GCTACAGGAACAAAGCCCTAATCAAGCCTCTCCAGCAGGTCCTTGCTAATAGTCTGAGGT 1036
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 937 GCTACAGGAACAAAGCACTAATCAAGCCTCTCCAGCAGGTTCTTGCTAATAGTCTGAGGT 996
Query 1037 ACTTCTTGAGGCGTCCATCAACTGACGAGTCAAGTTTCTGATTATGCCCATTTTTCAAAA 1096
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 997 ACTTCTTGAGGCGTCCATCAACTGACGAGTCAAGTTTCTGATGATGCCCATTTTTCAAAA 1056
Query 1097 TCTCAAGTCTCATTCCTCGTGACTACTATTTTTACCACttttttttttttttACATTTGA 1156
||| ||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1057 TCTGAAGTCCCATTCCTCGTGACTACT-TTTT-ACCACGTTTTTTTTTTTTTACATTTGA 1114
Query 1157 CCAAAATAAGCTGC-TTCATACACCTGTAATAGTAACATTATGCATCATTCATCCAATTT 1215
||||||||||||| ||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 1115 CCAAAATAAGCTGTGTTCATACACCTGTAATAGTAATATTCTCCATCATTCATCAAATTT 1174
Query 1216 ACTTTGATTCACAACCTGTG 1235
||||||||||||||||||||
Sbjct 1175 ACTTTGATTCACAACCTGTG 1194
Score = 100 bits (54), Expect = 2e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 AGAGAAATGGCGATCTAACGTTGAAGATAATAAGAAGGACGAAACGGGCAtttttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 AGAGAAATGGCGATCTAACGTTGAAGATAATAAGAAGGACGAAACGGACTTTTTTTTTTT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5