BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16900.1 Length=2084 Score E Sequences producing significant alignments: (Bits) Value Ahg471892 jgi|Araly1|471892|fgenesh2_kg.1__1846__AT1G16900.1 3125 0.0 > Ahg471892 jgi|Araly1|471892|fgenesh2_kg.1__1846__AT1G16900.1 Length=2016 Score = 3125 bits (1692), Expect = 0.0 Identities = 1897/1993 (95%), Gaps = 25/1993 (1%) Strand=Plus/Plus Query 93 CACGACCTCCATTTTCGTGCTGAGATTC-TCTAAGCTCGATGGATCTAACGACGACGCGT 151 |||||||||||||||||| |||| | || ||||||||||||||||||||||||||||||| Sbjct 34 CACGACCTCCATTTTCGTACTGA-AATCATCTAAGCTCGATGGATCTAACGACGACGCGT 92 Query 152 CAGAGGCGTCCACTTATATCTGACTCTTCTTCTTCGTCTTCTACGAAATCTTACTCGAAG 211 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 93 CAGAGGCGTCCACTTATATCTGACTCTTCTTCTTCGTCTTCCACGAAATCTTACTCGAAG 152 Query 212 ACCGATAAACCTGGCCGATCTAATGGC-GGTGATGCGGAGGATGGTGGTCTCCGATGGTT 270 |||||||| ||||||||| |||| ||| || ||||||||||||||||||||||| ||||| Sbjct 153 ACCGATAAGCCTGGCCGACCTAACGGCAGG-GATGCGGAGGATGGTGGTCTCCGGTGGTT 211 Query 271 CTTGCCGTTTATAGCGCTTTGTTATCTTCGTTACATGAGCGCGACTTCTAATATCATTCA 330 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 212 CTTGCCGTTTATGGCGCTTTGTTATCTTCGTTACATGAGCGCGACTTCTAACATCATTCA 271 Query 331 TGACTGCGATGAAGTGTTCAATTACTGGGAGCCTCTTCATTATATTCTCTACAAGTCCGG 390 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 272 TGACTGCGATGAAGTGTTCAATTACTGGGAGCCTCTTCATTATCTTCTCTACAAGTCCGG 331 Query 391 ATTTCAGACCTGGGAATACAGTTCCAACTTTGCTCTTCGGTCGTACTTATACATTCTATT 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 332 ATTTCAGACCTGGGAATACAGTTCCAACTTTGCTCTTCGGTCGTACTTATACATCCTTTT 391 Query 451 CCATGAATTGGCTGGACGGCCTGCTTCTTGGTGGTTTGGTGATGACAAGGTTAGAGTTTT 510 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 392 CCATGAATTGGCTGGACGGCCTGCTTCTTGGTGGTTCGGTGATGACAAGGTTAGAGTTTT 451 Query 511 CTATGCAGTGAGACTCTTTCTCGGACTGGTTTCTGCAGTTTCAGATACTGTCCTGGTTGT 570 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 452 CTATGCTGTGAGACTCTTTCTCGGACTGGTTTCTGCAGTTTCAGACACTGTCCTGGTTAT 511 Query 571 TGCGCTCTCCAGAAAGTATGGGAAACGTATCGCTACCTATGCAGTTGCGATGCTCTGCTT 630 |||||| ||||||||||| || |||||| | ||||| ||||||||||||||||||||||| Sbjct 512 TGCGCTTTCCAGAAAGTACGGCAAACGTCTTGCTACATATGCAGTTGCGATGCTCTGCTT 571 Query 631 AACCAGTGGCTGCTTCTTTGCTAGTACCAGTTTCCTCCCCAGTTCATTTTCTATGTACGC 690 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 572 AACCAGTGGCTGCTTCTTTGCTAGCACCAGTTTCCTCCCCAGTTCATTTTCTATGTACGC 631 Query 691 CATAAGCCTCTCATCTGGTTTATTACTTTTCGAGAAGTATGCCATGGCTGTTGCAGTTTC 750 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 CATAAGCCTCTCATCTGGTTTATTACTTTTCGAGAAGTATGCCATGGCTGTTGCAGTTTC 691 Query 751 GGTTGTCGGGGTGATTCTTGGCTGGCCATTTTCTATCTTGGCCTTTTTACCTGTCGTTAT 810 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 692 GGTTGTCGGGGTGATTCTTGGCTGGCCATTTTCTATCTTGGCCTTTTTACCTGTTGTTAT 751 Query 811 TTACTCTCTGGTTAAGAGATTCAAGCAAGCATTTATCGCTGGTGCAGTCACCACTATATT 870 ||||||||||||||||||||||||||||||||||||| |||| || ||||| || | || Sbjct 752 TTACTCTCTGGTTAAGAGATTCAAGCAAGCATTTATCTCTGGCGCTGTCACTTCTCT-TT 810 Query 871 TC-TCCTT-GGAGTCTCACTACTTGTGGATTACTATTATTACAAGAGATGGACATCATCA 928 || || || |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 811 TCCTC-TTAGGAGTCTCACTACTTGTGGATTACTATTATTATAAGAGATGGACATCATCG 869 Query 929 GTTTTGAATCTCTTGATATACAATGTGTTAGGGGGTGGAGAGAGCCATCTCTATGGGACT 988 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 870 GTTTTGAATCTCTTGATATACAATGTGTTAGGGGGTGGAGAGAGCCATCTCTATGGGACT 929 Query 989 GAAGGAGCG-TTATTTTATATAAGAAATGGATTTAACAACTTCAACTTCTGTTTCATTTT 1047 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 930 GAAGGAGCACTT-TTTTATATAAGAAATGGATTTAACAACTTCAACTTCTGTTTCATTTT 988 Query 1048 GGCAATGTTGTTTGTCGCAATATATCCTGTTATCAGAAGGAAGTATGACCGTGCCCTGCT 1107 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 989 GGCCATGTTGTTTGTCGCAATATATCCTGTTATCAGAAGAAAGTATGACCGTGGCCTGCT 1048 Query 1108 GGTTGTGATTTCCCCGATGTATATTTGGCTGGCGTTCATGTCACTTCAGCCCCACAAAGA 1167 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1049 GGTTGTGATTTCGCCGATGTATATTTGGCTGGCATTCATGTCACTTCAGCCCCACAAAGA 1108 Query 1168 AGAAAGGTTCCTTTATCCTATATACCCTCTTATTTGTGTCTCTGCTTCTGCTGTTATTGA 1227 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1109 AGAAAGGTTCCTTTATCCTATATACCCTCTTATATGTGTCTCTGCTTCTGCTGTTATTGA 1168 Query 1228 GAACATCCCTGAGCTGTTCCGGGAAAAGTATAGCTCACGTGAAAGTCTTCTGGTGACAAT 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1169 GAACATCCCTGAGCTGTTCCGGGAAAAGTATAGCTCACGTGAAAGTCTTCTGGTGACAAT 1228 Query 1288 AACCAAATACATGCGACCTGTGATTCTTGGTTGTATCTTATGTGCTTCACATTCTCGCAC 1347 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1229 AACCAAATACATGCGACCTGTGATTCTTGGTTTTATCTTATGTGCTTCACATTCTCGCAC 1288 Query 1348 ATTTGCTCTTATTAATGGCTATTCCGCTCCCTTGGAGGTCTACAAACTACTGGAGCATCA 1407 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || Sbjct 1289 ATTTGCTCTTATTAATGGCTATTCCGCTCCCTTAGAGGTCTACAAACTACTAGAGCACCA 1348 Query 1408 TGATGATGCAGGACCAGGTTCTGTTCTATGTGTGGGAAGTGAATGGCATCGATACCCATC 1467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1349 TGATGATGCAGGACCAGGTTCTGTTCTATGTGTGGGAAGTGAATGGCATCGATACCCATC 1408 Query 1468 ATCGTTTTTTGTGCCCCACTACATTAGCGAAGTACGGTGGATCGATGATGGATTCCGCGG 1527 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1409 ATCGTTTTTTGTGCCTGACTACATCAGCGAAGTACGGTGGATCGATGATGGATTCCGCGG 1468 Query 1528 TCTTCTTCCATTCCCATTTAACAATACACTTGGAGGCACTTCAGCATCACCTCCATACTT 1587 ||||||||||||||||||||||| |||||||||||||||| ||||| ||||| ||||||| Sbjct 1469 TCTTCTTCCATTCCCATTTAACAGTACACTTGGAGGCACTGCAGCAGCACCTGCATACTT 1528 Query 1588 CAACAACAAGAACCAAGCATCCGAAGAACAATATTTAAAGAACATCGAAACTTGTACATT 1647 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1529 CAACAACAAGAACCAAGCATCTGAAGAACAATATTTAAAGAACATCGAAACTTGTACATT 1588 Query 1648 CCTCATTGAGTTGCAGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATG 1707 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1589 CCTCATTGAGTTGCAGCTTAGCAGACCGTATCAATATCGAGGCAGCGACTTATCTACGTG 1648 Query 1708 GGAGGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTATAGATC 1767 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1649 GGAGGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTTTCGCCAGCTAAGTATAGATC 1708 Query 1768 GTTCTTCATCCCGCACATGTGGCAGGAGAAAAATGTGTTTGGCAAATACGTAGCACTGAG 1827 ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1709 GTTCTTCATCCCGTACATGTGGCAGGAGAAAAACGTGTTTGGCAAATACGTAGCACTTAG 1768 Query 1828 AAGAGTCCCAAAATGATCACAAATCGTTAAAACTC-CTTAGACTTGTAGCTTTAACTCAG 1886 ||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||| Sbjct 1769 AAGAGTCCCAAAATGATCACAAATCCTTAAGACTCTCT-AGACTTGTAGCTTTAACTCAG 1827 Query 1887 TTCATTGGGTAGTTTTGGGAG-AATGTAATAACTAATAACTGATTAGTATCGGCTTT-AA 1944 ||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||| || Sbjct 1828 TTCATTGGGCAGTTTTGAGCGGAATGTAATAACTAATAACTGATTAGTATCGGCTTTTAA 1887 Query 1945 GTTCAGGTACGTTCACGGTTCGTAGTTGTGTTGTTGTGAAAGAGACTAGTTTTAACTTTG 2004 ||||| ||||||||||||||||| || || || ||||||||||||||| |||||| Sbjct 1888 GTTCA----CGTTCACGGTTCGTAGTGGTAAAGTCGTTAAAGAGACTAGTTTTGACTTTG 1943 Query 2005 TAAGAAATCTCCAAATGG----T---CAGAAGAACGTGGAAGATTATGTTTATGACATTA 2057 |||||||||||||||||| | |||||||||||| ||||||||||| ||||||||| Sbjct 1944 TAAGAAATCTCCAAATGGCAACTGGTCAGAAGAACGTGAAAGATTATGTTGATGACATTA 2003 Query 2058 TTGTGCAAAGTCT 2070 ||||||||||||| Sbjct 2004 TTGTGCAAAGTCT 2016 Score = 65.8 bits (35), Expect = 1e-09 Identities = 35/35 (100%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 23 TTTTCTTCATTGCTTCGTCGAGAAGAGAATGAACA 57 ||||||||||||||||||||||||||||||||||| Sbjct 1 TTTTCTTCATTGCTTCGTCGAGAAGAGAATGAACA 35 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78389724210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5