BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16900.1
Length=2084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471892 jgi|Araly1|471892|fgenesh2_kg.1__1846__AT1G16900.1 3125 0.0
> Ahg471892 jgi|Araly1|471892|fgenesh2_kg.1__1846__AT1G16900.1
Length=2016
Score = 3125 bits (1692), Expect = 0.0
Identities = 1897/1993 (95%), Gaps = 25/1993 (1%)
Strand=Plus/Plus
Query 93 CACGACCTCCATTTTCGTGCTGAGATTC-TCTAAGCTCGATGGATCTAACGACGACGCGT 151
|||||||||||||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 34 CACGACCTCCATTTTCGTACTGA-AATCATCTAAGCTCGATGGATCTAACGACGACGCGT 92
Query 152 CAGAGGCGTCCACTTATATCTGACTCTTCTTCTTCGTCTTCTACGAAATCTTACTCGAAG 211
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 93 CAGAGGCGTCCACTTATATCTGACTCTTCTTCTTCGTCTTCCACGAAATCTTACTCGAAG 152
Query 212 ACCGATAAACCTGGCCGATCTAATGGC-GGTGATGCGGAGGATGGTGGTCTCCGATGGTT 270
|||||||| ||||||||| |||| ||| || ||||||||||||||||||||||| |||||
Sbjct 153 ACCGATAAGCCTGGCCGACCTAACGGCAGG-GATGCGGAGGATGGTGGTCTCCGGTGGTT 211
Query 271 CTTGCCGTTTATAGCGCTTTGTTATCTTCGTTACATGAGCGCGACTTCTAATATCATTCA 330
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 212 CTTGCCGTTTATGGCGCTTTGTTATCTTCGTTACATGAGCGCGACTTCTAACATCATTCA 271
Query 331 TGACTGCGATGAAGTGTTCAATTACTGGGAGCCTCTTCATTATATTCTCTACAAGTCCGG 390
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 272 TGACTGCGATGAAGTGTTCAATTACTGGGAGCCTCTTCATTATCTTCTCTACAAGTCCGG 331
Query 391 ATTTCAGACCTGGGAATACAGTTCCAACTTTGCTCTTCGGTCGTACTTATACATTCTATT 450
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 332 ATTTCAGACCTGGGAATACAGTTCCAACTTTGCTCTTCGGTCGTACTTATACATCCTTTT 391
Query 451 CCATGAATTGGCTGGACGGCCTGCTTCTTGGTGGTTTGGTGATGACAAGGTTAGAGTTTT 510
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 392 CCATGAATTGGCTGGACGGCCTGCTTCTTGGTGGTTCGGTGATGACAAGGTTAGAGTTTT 451
Query 511 CTATGCAGTGAGACTCTTTCTCGGACTGGTTTCTGCAGTTTCAGATACTGTCCTGGTTGT 570
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 452 CTATGCTGTGAGACTCTTTCTCGGACTGGTTTCTGCAGTTTCAGACACTGTCCTGGTTAT 511
Query 571 TGCGCTCTCCAGAAAGTATGGGAAACGTATCGCTACCTATGCAGTTGCGATGCTCTGCTT 630
|||||| ||||||||||| || |||||| | ||||| |||||||||||||||||||||||
Sbjct 512 TGCGCTTTCCAGAAAGTACGGCAAACGTCTTGCTACATATGCAGTTGCGATGCTCTGCTT 571
Query 631 AACCAGTGGCTGCTTCTTTGCTAGTACCAGTTTCCTCCCCAGTTCATTTTCTATGTACGC 690
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 572 AACCAGTGGCTGCTTCTTTGCTAGCACCAGTTTCCTCCCCAGTTCATTTTCTATGTACGC 631
Query 691 CATAAGCCTCTCATCTGGTTTATTACTTTTCGAGAAGTATGCCATGGCTGTTGCAGTTTC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 CATAAGCCTCTCATCTGGTTTATTACTTTTCGAGAAGTATGCCATGGCTGTTGCAGTTTC 691
Query 751 GGTTGTCGGGGTGATTCTTGGCTGGCCATTTTCTATCTTGGCCTTTTTACCTGTCGTTAT 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 692 GGTTGTCGGGGTGATTCTTGGCTGGCCATTTTCTATCTTGGCCTTTTTACCTGTTGTTAT 751
Query 811 TTACTCTCTGGTTAAGAGATTCAAGCAAGCATTTATCGCTGGTGCAGTCACCACTATATT 870
||||||||||||||||||||||||||||||||||||| |||| || ||||| || | ||
Sbjct 752 TTACTCTCTGGTTAAGAGATTCAAGCAAGCATTTATCTCTGGCGCTGTCACTTCTCT-TT 810
Query 871 TC-TCCTT-GGAGTCTCACTACTTGTGGATTACTATTATTACAAGAGATGGACATCATCA 928
|| || || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 811 TCCTC-TTAGGAGTCTCACTACTTGTGGATTACTATTATTATAAGAGATGGACATCATCG 869
Query 929 GTTTTGAATCTCTTGATATACAATGTGTTAGGGGGTGGAGAGAGCCATCTCTATGGGACT 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 GTTTTGAATCTCTTGATATACAATGTGTTAGGGGGTGGAGAGAGCCATCTCTATGGGACT 929
Query 989 GAAGGAGCG-TTATTTTATATAAGAAATGGATTTAACAACTTCAACTTCTGTTTCATTTT 1047
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 GAAGGAGCACTT-TTTTATATAAGAAATGGATTTAACAACTTCAACTTCTGTTTCATTTT 988
Query 1048 GGCAATGTTGTTTGTCGCAATATATCCTGTTATCAGAAGGAAGTATGACCGTGCCCTGCT 1107
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 989 GGCCATGTTGTTTGTCGCAATATATCCTGTTATCAGAAGAAAGTATGACCGTGGCCTGCT 1048
Query 1108 GGTTGTGATTTCCCCGATGTATATTTGGCTGGCGTTCATGTCACTTCAGCCCCACAAAGA 1167
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1049 GGTTGTGATTTCGCCGATGTATATTTGGCTGGCATTCATGTCACTTCAGCCCCACAAAGA 1108
Query 1168 AGAAAGGTTCCTTTATCCTATATACCCTCTTATTTGTGTCTCTGCTTCTGCTGTTATTGA 1227
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1109 AGAAAGGTTCCTTTATCCTATATACCCTCTTATATGTGTCTCTGCTTCTGCTGTTATTGA 1168
Query 1228 GAACATCCCTGAGCTGTTCCGGGAAAAGTATAGCTCACGTGAAAGTCTTCTGGTGACAAT 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 GAACATCCCTGAGCTGTTCCGGGAAAAGTATAGCTCACGTGAAAGTCTTCTGGTGACAAT 1228
Query 1288 AACCAAATACATGCGACCTGTGATTCTTGGTTGTATCTTATGTGCTTCACATTCTCGCAC 1347
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1229 AACCAAATACATGCGACCTGTGATTCTTGGTTTTATCTTATGTGCTTCACATTCTCGCAC 1288
Query 1348 ATTTGCTCTTATTAATGGCTATTCCGCTCCCTTGGAGGTCTACAAACTACTGGAGCATCA 1407
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1289 ATTTGCTCTTATTAATGGCTATTCCGCTCCCTTAGAGGTCTACAAACTACTAGAGCACCA 1348
Query 1408 TGATGATGCAGGACCAGGTTCTGTTCTATGTGTGGGAAGTGAATGGCATCGATACCCATC 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TGATGATGCAGGACCAGGTTCTGTTCTATGTGTGGGAAGTGAATGGCATCGATACCCATC 1408
Query 1468 ATCGTTTTTTGTGCCCCACTACATTAGCGAAGTACGGTGGATCGATGATGGATTCCGCGG 1527
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1409 ATCGTTTTTTGTGCCTGACTACATCAGCGAAGTACGGTGGATCGATGATGGATTCCGCGG 1468
Query 1528 TCTTCTTCCATTCCCATTTAACAATACACTTGGAGGCACTTCAGCATCACCTCCATACTT 1587
||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||
Sbjct 1469 TCTTCTTCCATTCCCATTTAACAGTACACTTGGAGGCACTGCAGCAGCACCTGCATACTT 1528
Query 1588 CAACAACAAGAACCAAGCATCCGAAGAACAATATTTAAAGAACATCGAAACTTGTACATT 1647
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1529 CAACAACAAGAACCAAGCATCTGAAGAACAATATTTAAAGAACATCGAAACTTGTACATT 1588
Query 1648 CCTCATTGAGTTGCAGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATG 1707
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1589 CCTCATTGAGTTGCAGCTTAGCAGACCGTATCAATATCGAGGCAGCGACTTATCTACGTG 1648
Query 1708 GGAGGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTATAGATC 1767
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1649 GGAGGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTTTCGCCAGCTAAGTATAGATC 1708
Query 1768 GTTCTTCATCCCGCACATGTGGCAGGAGAAAAATGTGTTTGGCAAATACGTAGCACTGAG 1827
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1709 GTTCTTCATCCCGTACATGTGGCAGGAGAAAAACGTGTTTGGCAAATACGTAGCACTTAG 1768
Query 1828 AAGAGTCCCAAAATGATCACAAATCGTTAAAACTC-CTTAGACTTGTAGCTTTAACTCAG 1886
||||||||||||||||||||||||| |||| |||| || |||||||||||||||||||||
Sbjct 1769 AAGAGTCCCAAAATGATCACAAATCCTTAAGACTCTCT-AGACTTGTAGCTTTAACTCAG 1827
Query 1887 TTCATTGGGTAGTTTTGGGAG-AATGTAATAACTAATAACTGATTAGTATCGGCTTT-AA 1944
||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1828 TTCATTGGGCAGTTTTGAGCGGAATGTAATAACTAATAACTGATTAGTATCGGCTTTTAA 1887
Query 1945 GTTCAGGTACGTTCACGGTTCGTAGTTGTGTTGTTGTGAAAGAGACTAGTTTTAACTTTG 2004
||||| ||||||||||||||||| || || || ||||||||||||||| ||||||
Sbjct 1888 GTTCA----CGTTCACGGTTCGTAGTGGTAAAGTCGTTAAAGAGACTAGTTTTGACTTTG 1943
Query 2005 TAAGAAATCTCCAAATGG----T---CAGAAGAACGTGGAAGATTATGTTTATGACATTA 2057
|||||||||||||||||| | |||||||||||| ||||||||||| |||||||||
Sbjct 1944 TAAGAAATCTCCAAATGGCAACTGGTCAGAAGAACGTGAAAGATTATGTTGATGACATTA 2003
Query 2058 TTGTGCAAAGTCT 2070
|||||||||||||
Sbjct 2004 TTGTGCAAAGTCT 2016
Score = 65.8 bits (35), Expect = 1e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 23 TTTTCTTCATTGCTTCGTCGAGAAGAGAATGAACA 57
|||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTCTTCATTGCTTCGTCGAGAAGAGAATGAACA 35
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78389724210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5