BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16905.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471893 jgi|Araly1|471893|fgenesh2_kg.1__1847__AT1G16905.1 2023 0.0
> Ahg471893 jgi|Araly1|471893|fgenesh2_kg.1__1847__AT1G16905.1
Length=1372
Score = 2023 bits (1095), Expect = 0.0
Identities = 1285/1377 (93%), Gaps = 12/1377 (1%)
Strand=Plus/Plus
Query 1 GTTTCTATCAAGACCTTGAAAAAATGGCATTAGCATCACATAttcttattcttctttctc 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTCTATCAAGACCTTG--AAAATGGCATTAGCATCACATATTCTTATTCTTCTTTCTC 58
Query 61 tttttcttctGATTTCCCTCGTCCGACCACAAGTTCCTCCAATGGAGCAATTCCGGTTCC 120
|||||||||| || || |||| |||||||||||||||| || ||||||||||||||||||
Sbjct 59 TTTTTCTTCTCATCTCGCTCGCCCGACCACAAGTTCCTTCATTGGAGCAATTCCGGTTCC 118
Query 121 TTAACAACGGCGACTTTGGAGAATCCACGGTGGAGTACGGTGCAAGTTACAGAGATTTAG 180
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 119 TTAACAACGGCGACTTTGGAGAGTCCACGGTGGATTACGGTGCAAGTTACAGAGATTTAG 178
Query 181 GTGTAATACGTAACCAATTTCGTCTATGTTTCTTCAACACCACGCCAAACGCATTCACAC 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GTGTAATACGTAACCAGTTTCGTCTATGTTTCTTCAACACCACGCCAAACGCATTCACAC 238
Query 241 TCGCTATCGGGATGGGGACAGGAAGTTCTGATTCAATCATTCGTTGGGTTTGGCAAGCTA 300
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 239 TCGCTATTGGGATGGGAACAGGAAGTTCTGATTCCATCATTCGTTGGGTTTGGCAAGCTA 298
Query 301 ACCCACAAAAACCAGTTCAAGAAGAGGCTTCTCTTTCGTTTGGACCGGAGGGAAACCTTG 360
|||| ||||| || ||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 299 ACCCTCAAAATCCGGTTCAAGAAGAAGCTTCTCTTTCGTTCGGACCTGAAGGAAACCTTG 358
Query 361 TCCTCGCCCAGCCAGATGGCAGAGTCGTATGGCAGACCATGACAGAAAATAAAGGTGTTA 420
|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 359 TCCTGGCCCAGCCAGATGGCACAGTCGTATGGCAGACCATGACAGAAAACAAAGGTGTTA 418
Query 421 TAGGCTTGACCATGAACGAAAATGGAAATCTTGTGTTGTTTGATGATGGAGGATGGCCCG 480
||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 419 TAGGCTTAACGATGAACGAAAACGGAAATCTTGTGTTGTTTGATGATGGAGGGTGGCCCG 478
Query 481 TGTGGCAGAGCTTTGAATTCCCAACGGATACACTCTTGGTCGGTCAGTCT-TTAACACTC 539
| |||||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||
Sbjct 479 TATGGCAGAGCTTTGATTTCCCGACGGATACACTCTTGGTCGGCCAGTCTCTT-ACACTC 537
Query 540 GATGGGTCGAAGAACAAGCTCGTAAGCCGCAACAATGGGTCTTATAGTCTTATCTTAGAG 599
||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 538 GATGGGTCGAAGAACAAACTCGTAAGTCGCAACAATGGGGCTTTTAGTCTTATCTTAGAG 597
Query 600 CCCGACCGACTCGTTCTAAACCGTTTAATCCCTCGTAGCAACAACAAATCCCTTGTGTAT 659
|||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||||||||
Sbjct 598 CCCGACCGACTCGTTCTAAACCATTTAGTCCCTCGGAGCAACAACAAATCCGTTGTGTAT 657
Query 660 CACATTATAGAGGGTCGGTTTATTCCAAGCGCCACTCTATACTCGGCTAAAGACCAAGGG 719
|| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 658 TACGTTATAGAAGGTCGGTTTATTCCAAGCGCCACTCTTTACGCGGCTAAAGACCAGGGG 717
Query 720 ACCACGACTCAATTGGGCCTAGCCACGCCGGGGCTCAGGCCTGAGTTTCCATATAAACAT 779
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 718 ACCACGACTCAATTGGGCCTATCCACGCCGGGGCTTAGGCCTGAGTTTCCGTATAAACAT 777
Query 780 TTTCTCGCAAGGCCTAGATTCAACGCCTCACAAAGTTTCCTTAGGCTCGACGCTGATGGA 839
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 778 TTCCTCGCAAGGCCTAGATTCAACGCCTCGCAAAGTTTCCTCAGGCTTGACGCTGATGGA 837
Query 840 AATCTTAGGATTTACTCTTTCGATTCCAAGGTCACGTTTCTTGCATGGGAAGTAACGTTC 899
||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 838 AATCTTAGGATTTACACTTTCGATTTCAAGGTCACTTTTCTTGCATGGGAAGTAACATTC 897
Query 900 GAGCTTTTCAACCACGACAACAACAACGA--G-TGTTGGTTACCGTCCAAGTGTGGAGCG 956
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 898 GAGCTTTTCAACCACGACAACAACAACGAGTGTTGTTGGTTACCGTCCAAGTGTGGAGAG 957
Query 957 TTTGGGATTTGTGAGGACAATCAATGTGTGGCTTGTCCGTTGGGAG-TGGGCTTAATGGG 1015
|||||| |||||||||| ||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 958 TTTGGGCTTTGTGAGGATAATCAATGTGTGGCTTGTCCGTT-GGAGATGGGCTTACTGGG 1016
Query 1016 CTGGAGTAAGGCTTGTAAGCCTAAGAAGGTGAAGAGTTGTGATCCGAAGAGTTTTCATTA 1075
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1017 CTGGAGTAAGGCTTGTAAGCCTAAGAAGGTGAAGAGTTGTGATCCGAAGACTTTTCATTA 1076
Query 1076 TTATAGACTTGGAGGTGTTGAGCATTTCATGACTAAGTATAACGTTGGTCTTGCGCTTGG 1135
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TTATAGACTTGGAGGTGTTGACCATTTCATGACTAAGTATAACGTTGGTCTTGCGCTTGG 1136
Query 1136 AGAGAGCAAGTGTCGGGGTTTGTGTAGTGGAGACTGTAAATGTTTGGGGTATTTTTTCGA 1195
||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 1137 AGAGAGCAAATGTCGAAGTTTGTGTAGTCGAGACTGTAAATGCTTGGGGTATTTTTACGA 1196
Query 1196 TAAAAGTAGCTTTAAGTGTTGGATTAGTT-ATGAGCTTGGGACTTTAGTCAAAGTGTCTG 1254
||||||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||
Sbjct 1197 TAAAAGTAGCTTTAAGTGTTGGATT-GCTCATGAGCTTGGAACTTTAGTCAAAGTTTCTG 1255
Query 1255 ATTCCAGAAAAGTGGCTTATATCAAAACTCCTAATGTGTGATCAGTAA-CGTGTAGAAAA 1313
|||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||
Sbjct 1256 ATTCCAGAAAAGTGGCTTATATCAAAACCCCTAATGTTTGATCTTTAAACGTGTAGAAAA 1315
Query 1314 GGCAAAAAACATAATGGGCTTAAAGTACTAATAAGCCCATTATATGTACGACTTAAT 1370
| | |||||||||||||||||||||| |||| |||||||||| |||||| |||||||
Sbjct 1316 GACGAAAAACATAATGGGCTTAAAGTGCTAAGAAGCCCATTAAATGTACAACTTAAT 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5