BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16910.1

Length=925
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948377 jgi|Araly1|948377|scaffold_800264.1                       76.8    3e-13


> Ahg948377 jgi|Araly1|948377|scaffold_800264.1
Length=589

 Score = 76.8 bits (41),  Expect = 3e-13
 Identities = 115/149 (77%), Gaps = 12/149 (8%)
 Strand=Plus/Plus

Query  560  GACCAGTTTGGTAAAACAAAAGTTCAT-ATCCAAGGATGCGTTTTCTTCGGACAGA-AAG  617
            ||||| || |||||||| ||||| ||| || ||||  || |||||||| ||||| |   |
Sbjct  228  GACCAATTCGGTAAAACCAAAGTCCATAAT-CAAGCTTGTGTTTTCTTTGGACA-ACCCG  285

Query  618  AGCCACCAGGAG-AGTGTAAC-TGCCCGT-TGAAA-CAGGCGTGGGGAAGCTTAGATGCT  673
            | ||||| |  |   ||  || || || | | ||| || || ||||||||||||||||||
Sbjct  286  ATCCACC-GTCGCCTTG-CACGTGTCC-TCT-AAAGCAAGCTTGGGGAAGCTTAGATGCT  341

Query  674  TTGATCGGACGGCTGAGAGCAGCTTACGA  702
            |||||||||||| | ||||| ||||||||
Sbjct  342  TTGATCGGACGGTTAAGAGCTGCTTACGA  370



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34310625300


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5