BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16920.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471894 jgi|Araly1|471894|fgenesh2_kg.1__1848__AT1G16920.1 1210 0.0
Ahg910431 jgi|Araly1|910431|Al_scaffold_0001_685 169 4e-41
Ahg919287 jgi|Araly1|919287|scaffold_100568.1 89.8 3e-17
> Ahg471894 jgi|Araly1|471894|fgenesh2_kg.1__1848__AT1G16920.1
Length=770
Score = 1210 bits (655), Expect = 0.0
Identities = 733/771 (95%), Gaps = 3/771 (0%)
Strand=Plus/Plus
Query 1 AAATCTCAGTTTACACCTTCACACTGCTGCGtctctctctctctctctctTTC--TTTCT 58
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAATCTCAGTTTACACCTTTACACTGCTGCGTCTCTCTCTCTCTCTCTCTTTCTATTTCT 60
Query 59 CAGATTAATCGCTGAGAAGAAGCAACCACCTGGAGACGGCGGAGATGGCAGGGTACAGAG 118
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 61 CAGATTAATCGCTGAGAAGAAGCAACCACCT-GAGACGGCGGAGATGGCTGGGTACAGAG 119
Query 119 TGGAAGATGACTACGATTACCTCTTCAAAGTTGTTCTTATAGGCGATTCTGGAGTTGGCA 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 TGGAAGATGACTACGATTACCTCTTCAAAGTTGTTCTTATAGGCGATTCTGGAGTCGGCA 179
Query 179 AATCCAATCTCCTTTCCAGATTCACTAAAAACGAGTTCAATCTAGAGTCTAAATCCACCA 238
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 180 AATCCAATCTCCTTTCCAGATTCACCAAAAACGAGTTCAACCTCGAGTCTAAATCCACCA 239
Query 239 TTGGCGTCGAATTCGCCACTCGTACCTTAAAAGTCGATGGCAAAGTCGTTAAAGCTCAGA 298
|||||||||||||||||||||| || |||||||||||||| |||||| | ||||||||||
Sbjct 240 TTGGCGTCGAATTCGCCACTCGCACATTAAAAGTCGATGGTAAAGTCATCAAAGCTCAGA 299
Query 299 TTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACTAGTGCATATTACCGTGGAG 358
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 300 TTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACCAGTGCATACTATCGTGGAG 359
Query 359 CCGTGGGTGCACTCCTAGTATATGATGTAACTCGCCGTGCAACATTTGAGAACGTAGATC 418
| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 360 CTGTGGGCGCACTCCTAGTATATGATGTAACCCGCCGTGCAACATTTGAGAACGTAGACC 419
Query 419 GGTGGTTAAAGGAGCTCAAGAACCACACAGATCCAAACATTGTAGTGATGCTGGTTGGTA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 GGTGGTTAAAGGAGCTCAAGAACCACACAGATCCAAACATTGTAGTGATGCTCGTTGGTA 479
Query 479 ACAAATCTGATCTCCGCCACTTGCTAGCTGTTCCTACAGAAGACGGGAAGTCCTATGCGG 538
|||||||||||||||||||||| |||||||||||||||||||| || || ||||| || |
Sbjct 480 ACAAATCTGATCTCCGCCACTTACTAGCTGTTCCTACAGAAGATGGAAAATCCTACGCTG 539
Query 539 AACAAGAATCGCTCTGCTTCATGGAAACATCTGCCCTTGAAGCTACCAATGTGGAGGACG 598
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 AGCAAGAATCACTCTGCTTCATGGAAACATCTGCCCTTGAAGCTACCAATGTCGAGGACG 599
Query 599 CATTTGCAGAGGTGTTGACACAAATTTATCGCATCACAAGCAAGAAGCAAGTGGAAGCTG 658
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 600 CATTTGCAGAGGTTTTGACACAGATTTATCGCATCACAAGCAAGAAGCAAGTTGAAGCTG 659
Query 659 GTGAAGATGGGAACGCCTCTGTCCCGAAAGGTGAGAAAATCGAAGTTAAAAACGATGTCT 718
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTGAAGATGGGAATGCCTCTGTCCCGAAAGGTGAGAAAATCGAAGTTAAAAACGATGTCT 719
Query 719 CTGCGCTGAAGAAACTCGGGTGCTGCTCAAATTGAAGCCtttttttGTTTT 769
|||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 720 CTGCTCTGAAGAAACTCGGGTGCTGCTCAAATTGAAGGCTTTTTTTTTTTT 770
> Ahg910431 jgi|Araly1|910431|Al_scaffold_0001_685
Length=645
Score = 169 bits (91), Expect = 4e-41
Identities = 286/378 (76%), Gaps = 22/378 (6%)
Strand=Plus/Plus
Query 125 ATGACTACGATTACCTCTTCAAAG-TTGTTCTTATAGGCGATTCTGGAGTTGGCAAATCC 183
|||| ||||||||| | ||| ||| | || || || |||||||| || ||||| ||||||
Sbjct 20 ATGAGTACGATTACTTGTTC-AAGATCGTCCTGATCGGCGATTCCGGTGTTGGTAAATCC 78
Query 184 AATC-TCCTTTC-CAGATTCACTAAAAACGAGTTCAATCTAGAGTCTAAATCCACCATTG 241
|| | | || || | ||||||| | ||| |||||| ||| || || |||||||||||||
Sbjct 79 AA-CATTCTCTCTC-GATTCACCAGAAATGAGTTCTGTCTCGAATCCAAATCCACCATTG 136
Query 242 GCGTCGAATTCGCCACTCGTACCTTAAAAGTCGATGGCAAAGTC-GTTAAAGCTCAGATT 300
|||||||||||||||| ||||| ||| | || || |||||| | || || |||||||||
Sbjct 137 GCGTCGAATTCGCCACCCGTACTTTACAGGTTGAAGGCAAA-ACAGTGAAGGCTCAGATT 195
Query 301 TGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACTAGTGCATATTACCGTGGAGCC 360
||||||||||| ||||| ||| | || || || ||||| ||||| || ||| | |||||
Sbjct 196 TGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCTTACTACAGAGGAGCT 255
Query 361 GTGGGTGCACTCCTAGTATATGATGTAACTCGCC-GTGCAA-CATTTGAGAACGTAGATC 418
|| || || || || || || || |||| | | |||| | |||||||| || |
Sbjct 256 GTTGGAGCTCTTCTTGTCTACGACATAAC-CAAAAG-GCAAACTTTTGAGAATGTCC-T- 311
Query 419 G-G-TGGTTAAAG-GAGCTCAAGAACCACACAGAT-CCAAACATTGT-AGTGATGCTGGT 473
| | |||||| | ||||| | | |||| | ||| |||| |||||| | | ||| |||
Sbjct 312 GAGATGGTTAC-GTGAGCTTAGGGACCATGCTGATTCCAA-CATTGTTA-TCATGATGGC 368
Query 474 TGGTAACAAATCTGATCT 491
||| |||||||| |||||
Sbjct 369 TGGAAACAAATCAGATCT 386
> Ahg919287 jgi|Araly1|919287|scaffold_100568.1
Length=697
Score = 89.8 bits (48), Expect = 3e-17
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 286 GTTAAAGCTCAGATTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACTAGTGCA 345
||||| |||||||||||||||||||||||||||||| ||| |||||| ||||| ||
Sbjct 201 GTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCGGTTTCGTGCCGTCACTTCCGCT 260
Query 346 TATTACCGTGGAGCCGTGGGTGCACTC 372
||||||||||| || || ||||| |||
Sbjct 261 TATTACCGTGGCGCTGTCGGTGCGCTC 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5