BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16930.1
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920600 jgi|Araly1|920600|scaffold_101881.1 2102 0.0
> Ahg920600 jgi|Araly1|920600|scaffold_101881.1
Length=1401
Score = 2102 bits (1138), Expect = 0.0
Identities = 1289/1361 (95%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 1 ATGGATGATGA-AACCTCTGTTAAAGAGAAGCAAAGGAACTCCGATAGGATAAGCAATTT 59
||||||| ||| || |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 21 ATGGATGTTGAGAA-CTCTGTCAAAGAGAAGCAGAGGAACTCCGATAGGATAAGCAATTT 79
Query 60 ACCTGATTCCTTGTTATGTCAGATTCTCTCAGATCTCTCCACAAAAGAATCGGTTTGCAC 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 ACCTGATTCTTTGTTATGTCAGATTCTCTCAGATCTCTCCACAAAAGAATCGGTTTGCAC 139
Query 120 AAGCGTTTTATCAAAACGATGGAGAAATCTCTGGTTACATGTTCCTGTATTGGATTTGGA 179
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 140 AAGCGTTTTATCAAAACGATGGAGAAGTCTCTGGTTACATGTTCCTGCACTGGATTTGGA 199
Query 180 TTCCAATAACTTCCCAGATGATGATGTTTTTGTGAGTTTCGTAAATAGGTTTCTGGGTTC 239
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 200 TTCCAATAACTTCCCAGATGATGATGTTTTTGTGAGTTTCGTAAACAGGTTTCTGGTTTC 259
Query 240 TGAAAATGAGCAACACTTGGAGAGATTCAAGTTGATCTATGAGGTTAATGAGCACGATGC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 260 TGAAAATGAGCAACACTTGGAGAGATTCAAGTTGATCTATGAGGTTAATGAGCATGATGC 319
Query 300 TTCTCGTTTCAAGTCTTGGATCAATGCTGTGATTAAGCGTAGAGTTTGTCATTTTAATGT 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TTCTCGGTTCAAGTCTTGGATCAATGCTGTGATTAAGCGTAGAGTTTGTCATTTTAATGT 379
Query 360 TCATAATGA----G--G-TG--GATGATGATGACGAGTTAGTTAAGATGCCTTTATCTCT 410
||||||||| | | || ||||||||||| ||||||||||||||||||||||||||
Sbjct 380 TCATAATGAGGTGGATGATGATGATGATGATGATGAGTTAGTTAAGATGCCTTTATCTCT 439
Query 411 CTATTCATGTGAAAGATTGGTGAACTTACAGCTCTACCGCGTAGCCTTGGATCATCCGGA 470
||| || |||||||| |||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 440 CTACTCTTGTGAAAGCTTGGTGAACTTACAGCTCTACCGCGTAGTCTTGGATCATCCCGA 499
Query 471 ATCTGTTTCGCTGCCTTGTGTCAAGATTATGCATCTTGATATGGTCAAGTACGATGCTGA 530
||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 500 ATCTGTTTCCCTGCCCTGTGTCAAGATTGTGCATCTTGATATGGTCAAGTACGATGCTGA 559
Query 531 TTCGACTCTGGAGATTCTAATATCAGGTTGTCCAGTTTTGGAAGAGTTAACCATAGTTCG 590
||||||||| |||| ||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 560 TTCGACTCTAGAGAGGCTAATATCAGGTTGTTCTGTTCTGGAAGAGTTAACCATAGTTCG 619
Query 591 TGATCCCAATGATTCTCTTGAAGTTGTGTGTGTGCGTTCCCAGTCTTTAAAAAGCTTCAA 650
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 620 TGATCCCAATGATTCTCTACAAGTTGTGTGTGTGCGTTCCAAGTCTCTAAAAAGCTTCAA 679
Query 651 GATAGATTCTGAGCGCTACGAAAGTCAAAATCATGTTGTT-ACAATCGATGCTCCAAGAC 709
|||||| | |||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 680 GATAGAGTGTGAGCGCTACGAAAGTAAAAATCATGTTGTTGA-AATCGATGCTCCAAGAC 738
Query 710 TTGAGTATATGAATCTTTGTGATCATCGATCTGACAGCTTCATAATACACAACATTGGCC 769
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 739 TCGAGTATATGAATCTTTGTGATCATCGATCTGACAGCTTCATAATACACAATATTGGCC 798
Query 770 CCTTTGCAAAGGTAGATATCGATGTTATCTTTAATGTCGAATATAATGATCCATTGGAAC 829
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 799 CCTTTGCAAAGGTAGATATTGATGTTATCTTTAATGTGGAATATAATGATCCATTGGAAC 858
Query 830 CAGATGATTCTTCCAAGATAGCTATGCTAGGTAAATTCCTCACTGGGTTATCTACGGTCA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CAGATGATTCTTCCAAGATAGCTATGCTAGGTAAATTCCTCACTGGGTTATCTACGGTCA 918
Query 890 GCGAAATGGTCATATCTTCTGATACTCTACAGGTTATTCATGATTACTGCAAAATGGAAC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GCGAAATGGTCATATCTTCTGATACTCTACAGGTTATTCATGATTACTGCAAAATGGAAC 978
Query 950 AACTACCTCAATTCTCTAACTTGTCTCGCTTGCATGCTTACTTCGAAGATACTTGGTGGG 1009
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 979 AACTACCTCAATTCTCTAACTTGTCTCGCTTGCATGCTTACTTCGAAGATTCTTGGTGGG 1038
Query 1010 AAATGTTGCCAACCTTCCTTGAGAGCTTCCCAAATCTACACTCACTCGTCATGGAATTTG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 AAATGTTGCCAACCTTCCTTGAGAGCTTCCCAAATCTACACTCACTCGTCATGGAATTTG 1098
Query 1070 ATTGCTTTCCAGACACAGAGCAGATTGATCTTTCATATGTGCCACAATGTTTCCTATCAT 1129
||||||||||||| | |||||||||||||||||||| ||| |||| ||||||| ||||||
Sbjct 1099 ATTGCTTTCCAGATAAAGAGCAGATTGATCTTTCATCTGTACCACGATGTTTCATATCAT 1158
Query 1130 CTCTTGAGTTTGTTCATTTGAAGACTCCATACGTTGTTAACATGCAAAAGGAAGGGAGAC 1189
|||||||||||||||| | ||||| || | ||||| ||||||||||||||||||||||
Sbjct 1159 CTCTTGAGTTTGTTCACCTAAAGACACCGTTTGTTGTAAACATGCAAAAGGAAGGGAGAC 1218
Query 1190 CGCTCACAGGAACATCAAGTAAGAGGAAATTAGCAAAGTACTTTCTAGAGAATGGTGCAG 1249
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1219 CACTCACAGGAACATCAAGTAAGATGAAATTAGCAAAGTACTTTCTAGAGAATGGTGCAG 1278
Query 1250 CTCTCAAGAAACTGACAGTAAGTGCGAGTTTCTGTAACATCATCGACGAAATCAAAGCGA 1309
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 1279 CTCTCAAGAAACTGACAGTAAGTGCGAGTTTCTGTAACATTATCAACGAAATCAAATCGA 1338
Query 1310 TTCCAAGAAGCTCTACGAGTTGTCAAGTTGTCATGGATTAA 1350
|||||||||||||| |||| |||||||||||||||||||||
Sbjct 1339 TTCCAAGAAGCTCTGCGAGGTGTCAAGTTGTCATGGATTAA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50512865025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5