BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16930.1 Length=1350 Score E Sequences producing significant alignments: (Bits) Value Ahg920600 jgi|Araly1|920600|scaffold_101881.1 2102 0.0 > Ahg920600 jgi|Araly1|920600|scaffold_101881.1 Length=1401 Score = 2102 bits (1138), Expect = 0.0 Identities = 1289/1361 (95%), Gaps = 13/1361 (1%) Strand=Plus/Plus Query 1 ATGGATGATGA-AACCTCTGTTAAAGAGAAGCAAAGGAACTCCGATAGGATAAGCAATTT 59 ||||||| ||| || |||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 21 ATGGATGTTGAGAA-CTCTGTCAAAGAGAAGCAGAGGAACTCCGATAGGATAAGCAATTT 79 Query 60 ACCTGATTCCTTGTTATGTCAGATTCTCTCAGATCTCTCCACAAAAGAATCGGTTTGCAC 119 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 ACCTGATTCTTTGTTATGTCAGATTCTCTCAGATCTCTCCACAAAAGAATCGGTTTGCAC 139 Query 120 AAGCGTTTTATCAAAACGATGGAGAAATCTCTGGTTACATGTTCCTGTATTGGATTTGGA 179 |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| Sbjct 140 AAGCGTTTTATCAAAACGATGGAGAAGTCTCTGGTTACATGTTCCTGCACTGGATTTGGA 199 Query 180 TTCCAATAACTTCCCAGATGATGATGTTTTTGTGAGTTTCGTAAATAGGTTTCTGGGTTC 239 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 200 TTCCAATAACTTCCCAGATGATGATGTTTTTGTGAGTTTCGTAAACAGGTTTCTGGTTTC 259 Query 240 TGAAAATGAGCAACACTTGGAGAGATTCAAGTTGATCTATGAGGTTAATGAGCACGATGC 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 260 TGAAAATGAGCAACACTTGGAGAGATTCAAGTTGATCTATGAGGTTAATGAGCATGATGC 319 Query 300 TTCTCGTTTCAAGTCTTGGATCAATGCTGTGATTAAGCGTAGAGTTTGTCATTTTAATGT 359 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 TTCTCGGTTCAAGTCTTGGATCAATGCTGTGATTAAGCGTAGAGTTTGTCATTTTAATGT 379 Query 360 TCATAATGA----G--G-TG--GATGATGATGACGAGTTAGTTAAGATGCCTTTATCTCT 410 ||||||||| | | || ||||||||||| |||||||||||||||||||||||||| Sbjct 380 TCATAATGAGGTGGATGATGATGATGATGATGATGAGTTAGTTAAGATGCCTTTATCTCT 439 Query 411 CTATTCATGTGAAAGATTGGTGAACTTACAGCTCTACCGCGTAGCCTTGGATCATCCGGA 470 ||| || |||||||| |||||||||||||||||||||||||||| |||||||||||| || Sbjct 440 CTACTCTTGTGAAAGCTTGGTGAACTTACAGCTCTACCGCGTAGTCTTGGATCATCCCGA 499 Query 471 ATCTGTTTCGCTGCCTTGTGTCAAGATTATGCATCTTGATATGGTCAAGTACGATGCTGA 530 ||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 500 ATCTGTTTCCCTGCCCTGTGTCAAGATTGTGCATCTTGATATGGTCAAGTACGATGCTGA 559 Query 531 TTCGACTCTGGAGATTCTAATATCAGGTTGTCCAGTTTTGGAAGAGTTAACCATAGTTCG 590 ||||||||| |||| ||||||||||||||| | ||| |||||||||||||||||||||| Sbjct 560 TTCGACTCTAGAGAGGCTAATATCAGGTTGTTCTGTTCTGGAAGAGTTAACCATAGTTCG 619 Query 591 TGATCCCAATGATTCTCTTGAAGTTGTGTGTGTGCGTTCCCAGTCTTTAAAAAGCTTCAA 650 |||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 620 TGATCCCAATGATTCTCTACAAGTTGTGTGTGTGCGTTCCAAGTCTCTAAAAAGCTTCAA 679 Query 651 GATAGATTCTGAGCGCTACGAAAGTCAAAATCATGTTGTT-ACAATCGATGCTCCAAGAC 709 |||||| | |||||||||||||||| |||||||||||||| | ||||||||||||||||| Sbjct 680 GATAGAGTGTGAGCGCTACGAAAGTAAAAATCATGTTGTTGA-AATCGATGCTCCAAGAC 738 Query 710 TTGAGTATATGAATCTTTGTGATCATCGATCTGACAGCTTCATAATACACAACATTGGCC 769 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 739 TCGAGTATATGAATCTTTGTGATCATCGATCTGACAGCTTCATAATACACAATATTGGCC 798 Query 770 CCTTTGCAAAGGTAGATATCGATGTTATCTTTAATGTCGAATATAATGATCCATTGGAAC 829 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 799 CCTTTGCAAAGGTAGATATTGATGTTATCTTTAATGTGGAATATAATGATCCATTGGAAC 858 Query 830 CAGATGATTCTTCCAAGATAGCTATGCTAGGTAAATTCCTCACTGGGTTATCTACGGTCA 889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 859 CAGATGATTCTTCCAAGATAGCTATGCTAGGTAAATTCCTCACTGGGTTATCTACGGTCA 918 Query 890 GCGAAATGGTCATATCTTCTGATACTCTACAGGTTATTCATGATTACTGCAAAATGGAAC 949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919 GCGAAATGGTCATATCTTCTGATACTCTACAGGTTATTCATGATTACTGCAAAATGGAAC 978 Query 950 AACTACCTCAATTCTCTAACTTGTCTCGCTTGCATGCTTACTTCGAAGATACTTGGTGGG 1009 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 979 AACTACCTCAATTCTCTAACTTGTCTCGCTTGCATGCTTACTTCGAAGATTCTTGGTGGG 1038 Query 1010 AAATGTTGCCAACCTTCCTTGAGAGCTTCCCAAATCTACACTCACTCGTCATGGAATTTG 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1039 AAATGTTGCCAACCTTCCTTGAGAGCTTCCCAAATCTACACTCACTCGTCATGGAATTTG 1098 Query 1070 ATTGCTTTCCAGACACAGAGCAGATTGATCTTTCATATGTGCCACAATGTTTCCTATCAT 1129 ||||||||||||| | |||||||||||||||||||| ||| |||| ||||||| |||||| Sbjct 1099 ATTGCTTTCCAGATAAAGAGCAGATTGATCTTTCATCTGTACCACGATGTTTCATATCAT 1158 Query 1130 CTCTTGAGTTTGTTCATTTGAAGACTCCATACGTTGTTAACATGCAAAAGGAAGGGAGAC 1189 |||||||||||||||| | ||||| || | ||||| |||||||||||||||||||||| Sbjct 1159 CTCTTGAGTTTGTTCACCTAAAGACACCGTTTGTTGTAAACATGCAAAAGGAAGGGAGAC 1218 Query 1190 CGCTCACAGGAACATCAAGTAAGAGGAAATTAGCAAAGTACTTTCTAGAGAATGGTGCAG 1249 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1219 CACTCACAGGAACATCAAGTAAGATGAAATTAGCAAAGTACTTTCTAGAGAATGGTGCAG 1278 Query 1250 CTCTCAAGAAACTGACAGTAAGTGCGAGTTTCTGTAACATCATCGACGAAATCAAAGCGA 1309 |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| Sbjct 1279 CTCTCAAGAAACTGACAGTAAGTGCGAGTTTCTGTAACATTATCAACGAAATCAAATCGA 1338 Query 1310 TTCCAAGAAGCTCTACGAGTTGTCAAGTTGTCATGGATTAA 1350 |||||||||||||| |||| ||||||||||||||||||||| Sbjct 1339 TTCCAAGAAGCTCTGCGAGGTGTCAAGTTGTCATGGATTAA 1379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50512865025 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5