BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16950.1
Length=551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920601 jgi|Araly1|920601|scaffold_101882.1 488 2e-137
> Ahg920601 jgi|Araly1|920601|scaffold_101882.1
Length=322
Score = 488 bits (264), Expect = 2e-137
Identities = 299/316 (95%), Gaps = 2/316 (1%)
Strand=Plus/Plus
Query 62 AATCAA-T-CAGGTAATGGCTCGTCCAAGGATCTCCATTTCGATGATTTGCTTACTCATT 119
|||||| | ||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 6 AATCAATTACAGGTAATGGCTCGTCCAAGGATCTCCGTCTCGATGATTTGCTTACTGATT 65
Query 120 TTGATTGTTGGTTTTGTCTTGCAATCTTCTCAAGCTAGAAAAGTTCTAGTCCCTTACGGC 179
|||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |
Sbjct 66 TTGATTGTTGGTTTTGTCTTGCAATCTTGTCAAGCTAGAAAGGTTCTAGTACCTTACCGT 125
Query 180 ACAAGCAAGGGTTTGTTTCTTAGTGCCCTACCCAAGGGCAATGTACCACCTTCGGGTCCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ACAAGCAAGGGTTTGTTTCTTAGTGCCCTACCCAAGGGCAATGTACCACCTTCGGGTCCA 185
Query 240 AGCGACAAGGGTCACACTTCTCCTCCGGATGATACCGACCAGCGTATGGTACCAGAAAAC 299
||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||
Sbjct 186 AGCGACAAGGGTCACACTTCTCCTCCGGATGATTCCGATCAGCGTATGGTACCGGAAAAC 245
Query 300 TCGCCGGAGATATACCGTCGACTAGAATCAGTCCCTAGCCCCGGCGTGGGTCATTAGGCA 359
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||
Sbjct 246 TCGCCGGAGATTTACCGTCGACTGGAATCAGTCCCTAGCCCCGGTGTGGGTCATTAGACA 305
Query 360 CATTAATTGATTGTCG 375
||||||||||||||||
Sbjct 306 CATTAATTGATTGTCG 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20107995403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5