BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16960.1

Length=676
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911499 jgi|Araly1|911499|Al_scaffold_0001_1753                    588    2e-167


> Ahg911499 jgi|Araly1|911499|Al_scaffold_0001_1753
Length=345

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 336/345 (97%), Gaps = 0/345 (0%)
 Strand=Plus/Plus

Query  111  ATGGGTTGTTCTAGCTCGAGAACCATAGCAGAGGGGAAAAAGGAGAAGATTCGAAGACCA  170
            |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct  1    ATGGGTTGTTCTAGCTCGAGAACCATAGCAGAAGGGAAAAAAGAAAAGATTCGAAGACCA  60

Query  171  AAAACATGGAAACATCCTCAACCGATATCAAGAGATGAGCTCACACAGATGCGAGAGGAG  230
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  61   AAAACATGGAAACATCCTCAACCGATATCAAGAGCTGAGCTCACACAGATGCGAGAGGAG  120

Query  231  TTCTGGGACACAGCTCCTCACTATGGAGGCAAGAAAGAGATATGGGATGCGTTACGAGCT  290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  TTCTGGGACACAGCTCCTCACTATGGAGGCAAGAAAGAGATATGGGATGCGTTACGAGCA  180

Query  291  GCAGCAGAAGAGGATGATTTATCGCTTGCGCAAACGATACTTGAGAGTGCCGGTGTGATT  350
            |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  181  GCAGCAGAAGAGGAGGATTTATCGCTGGCGCAAACGATACTTGAGAGTGCTGGTGTGATT  240

Query  351  GTTCAGAACACTGACCTCACCATTTGTTACGACGAGAAAGGTTCCAAGTATGAATTGCCT  410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTTCAGAACACTGACCTCACCATTTGTTACGACGAGAAAGGTTCCAAGTATGAATTGCCT  300

Query  411  AAATACGTTCTCAGGGATCCTTCAAATTTGATCCCAACCAAATAG  455
            |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  301  AAATACGTTCTCAGGGATCCTTCAAATTTGATCCGAACCAAATAG  345



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24818018967


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5