BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16980.1
Length=2466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312668 jgi|Araly1|312668|fgenesh1_pm.C_scaffold_1001448 3421 0.0
Ahg889395 jgi|Araly1|889395|Al_scaffold_0007_1381 970 0.0
> Ahg312668 jgi|Araly1|312668|fgenesh1_pm.C_scaffold_1001448
Length=2529
Score = 3421 bits (1852), Expect = 0.0
Identities = 2081/2193 (95%), Gaps = 10/2193 (0%)
Strand=Plus/Plus
Query 1 ATGGATTATGATGATGCACGTGGTGAAAGGCCAAGATTGCTTGTGGTGGCTAACAGGCTT 60
||| ||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||
Sbjct 4 ATGCATTATGATGATGCGCGTGGTGAAAGGCCAAGACTACTTGTGGTGGCTAACCGGCTT 63
Query 61 CCGGTTTCTGCAAAGAGGACCGGGGAAAATTCTTGGTCTCTGGAAATGAGTCCTGGTGGT 120
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 64 CCGGTTTCTGCAAAGAGAACGGGGGAAAATTCTTGGTCTCTTGAAATGAGTCCTGGTGGT 123
Query 121 TTAGTCAGTGGTCTTCTAGGTATAACATCTCAATTTGATACCAAATGGGTTGGATGGCCC 180
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 124 TTAGTCAGTGGTCTTCTAGGTGTAACATCTCAATTAGATACCAAATGGGTTGGATGGCCT 183
Query 181 GGAGTTGATGTGCATGATGAAATTGaaaaaaaTGCACTCACTGAATCTCTAGCCGAAATG 240
|||||||||||| || ||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 184 GGAGTTGATGTGTATAATGAAGTTGAAAAAAATGCACTAACTAAATCTCTAGCCGAAATG 243
Query 241 AAGTGTATCCCTGTGTTCCTTAATGGGGTTTTTGATCAGTACTACAATGGTTATTGCAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AAGTGTATCCCTGTGTTCCTTAATGGGGTTTTTGATCAGTACTACAATGGTTATTGCAAT 303
Query 301 GGTATCTTGTGGCCAATTCTTCATCACATGGGACTTCCACAAGAAGATCAGCATGACACA 360
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 304 GGTATTTTGTGGCCAATTCTTCATCACATGGGACTTCCACAAGAAGATCAACATGACACA 363
Query 361 AACCAAACTTTCGAAACACAATATGATGCATACAAGAAAGCAAATCGAATGTTTCTTGAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AACCAAACTTTCGAAACACAATATGATGCATACAAGAAAGCAAATCGAATGTTTCTTGAT 423
Query 421 GTCATAATAGACAACTATGAAGAAGGAGATATTGTTTGGTGTCATGACTATCATCTCATG 480
||||||||| | |||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 424 GTCATAATACAGAACTATGAAGAAGGTGATACTGTTTGGTGTCATGATTATCATCTCATG 483
Query 481 TTTCTTCCTCAATACCTTAAAGAGTACAACAACAAAATCAAAGTTGGATGGTTTCTCCAT 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 484 TTTCTTCCTCAATACCTTAAAGAGCACAACAACAAAATCAAAGTTGGATGGTTTCTCCAT 543
Query 541 TCACCATTTCCTTCTTCTGAGGTCTACAAAACATTGCCCTCGCGGTCAGAGCTTCTTCGT 600
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 544 TCACCATTTCCTTCCTCTGAGGTCTACAAAACATTGCCCTCGCGATCAGAGCTTCTTCGT 603
Query 601 GCGATTCTTGCAGCTGATTTACTTGGCTTCCATACATATGATTTTGCAAGACATTTCTTG 660
||| ||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 604 GCGGTTCTTACAGCTGATTTACTTGGCTTTCACACATATGATTTTGTAAGACATTTCTTG 663
Query 661 AGTACATGCACTCGAATTCTTGGAGTTGAAGGAACACATGAAGGAGTTGTGTATCAAGGC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGTACATGCACTCGAATTCTTGGAGTTGAAGGAACACATGAAGGAGTTGTGTATCAAGGC 723
Query 721 AGAGTCACTCGAGTAGCTGTTTTTCCCATTGGAATAGATCCTGATCGGTTTATAAGAACA 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 724 AGAGTCACTCGAGTAGCTGTTTTTCCCATTGGAATTGATCCTGATCGGTTTATAAGAACA 783
Query 781 TGTAAGCTCCCTGAAGTCACACAGCAAATGAATGAGCTTCAAGAGAAGTTTGCTGGCAAA 840
|||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 784 TGTAAGCTCCCTGAAGTCACACAGAAAATGAATGAGCTTAAAGAGAGGTTTGCTGGCAAA 843
Query 841 AAGGTGATATTAGGTGTTGATCGTCTTGATATGATCAAAGGGATCCCACAAAAGTATCTT 900
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 844 AAGGTGATATTAGGTGTTGATCGTCTTGATATGATCAAAGGGATCCCACAGAAGTATCTT 903
Query 901 GCATTTGAGAAGTTTCTAGAAGAAAATCCATATTGGCGTGATAAAGTTGTGCTAGTGCAA 960
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 904 GCATTTGAGAAATTTCTAGAAGAAAATCCCTATTGGCGCGATAAAGTTGTGCTAGTGCAA 963
Query 961 ATTGCAGTGCCAACAAGAAATGATGTCCCTGAATATCGAAAGCTCAAAAGCCAAGTCCAT 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 964 ATTGCAGTGCCAACAAGAAATGATGTCCCTGAATATCGAAAGCTCAAAAGCCAAGTTCAT 1023
Query 1021 GGACTCGTTGGTCGCATAAACGGTCGTTTTGGTTCTGTCTCTTCTCTTCCAATCCATCAT 1080
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1024 GGACTCGTTGGACGCATAAATGGTCGTTTTGGTTCTGTCTCTTCTCTTCCAATCCATCAT 1083
Query 1081 CTGGATTGTTCTGTTGACTTCAACTACTTATGTGCAATATACGCAATTGCAGATGTAATG 1140
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1084 CTGGATTGTTCTGTTGACTTCAACTACTTATGTGCACTGTACGCAATTGCAGATGTAATG 1143
Query 1141 CTTGTAACATCTTTGAGAGATGGAATGAATCTTGTTAGTTATGAATTTGTTGCTTGTCAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1144 CTTGTAACATCTTTGAGAGATGGAATGAATCTTGTTAGTTATGAATTTGTTGCATGTCAA 1203
Query 1201 GAAGCCAAAAAGGGGGTTCTTGTTCTCAGTGAGTTTGCAGGTGCTGGCCAGTCTCTTGGT 1260
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1204 GAGGCCAAAAAAGGGGTTCTTGTTCTCAGTGAGTTTGCAGGTGCTGGACAGTCTCTTGGT 1263
Query 1261 GTTGGAGCTCTTA-TTGTGAATCCTTGGGATGTTACAGAAGTTTCTTCTGCCATTAAAGA 1319
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GTTGGAGCTCT-ACTTGTGAATCCTTGGGATGTTACAGAAGTTTCTTCTGCCATTAAAGA 1322
Query 1320 AGCTCTAAATATGCCAGCTGAAGAAAGAGAAACAAGACACAGATCTAATTTTCAGTATGT 1379
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1323 CGCCCTAAATATGCCAGCTGAAGAAAGAGAAACAAGACACAGATTTAATTTTCAGTATGT 1382
Query 1380 GTGTACTCATTCTGCTGAAAAATGGGGAT-TAGATTTCATGAGTGAACTCAATGGCATTA 1438
|| ||||||||||||| |||||||||||| | |||||||||||||||||||||||| ||
Sbjct 1383 GTATACTCATTCTGCTAAAAAATGGGGATCT-GATTTCATGAGTGAACTCAATGGCGCTA 1441
Query 1439 TTC-CTGAATCCGAGATGCAAATGAGGAAAATCCCACTTCAACTTCCAGAACAAGATGTG 1497
| | ||||||| ||||||||||| ||||| ||||||| | ||||||| |||||||||||
Sbjct 1442 T-CGCTGAATCGGAGATGCAAATCAGGAACATCCCACATGGACTTCCACAACAAGATGTG 1500
Query 1498 ATTCAACAATATTCGCAATCTAACAATAGACTAATAATATTGGGTTTCTTTGGAACACTC 1557
||||||| |||||||||||||||||| ||| ||||||| |||||||||| ||||||||||
Sbjct 1501 ATTCAACGATATTCGCAATCTAACAACAGATTAATAATCTTGGGTTTCTGTGGAACACTC 1560
Query 1558 GCAGAGCCAATGAATAGTGGAACTAAGGAAATGGATCTTAAACTAAACCCAGAGCTAAAA 1617
| |||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1561 ACTGAGCAAAAGAATAGTCGAAGTAAGGAAATGGATCTTAAACTAAACCCAGAGCTAAAA 1620
Query 1618 GGAACACTGAAAGCATTGTGCAATGATCCAAAAACAACAGTAGTTGTATTGAGTAGAAGT 1677
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1621 GGAACTCTGAAAGCATTATGCAATGATCCAAAAACAACAGTAGTCGTATTGAGTAGAAGT 1680
Query 1678 GGCAAAAACATATTAAACAAGAATTTTGGAGAGTCTAATATATGGCTGGCTGCGGAAAAT 1737
| |||| |||||||| |||| |||||||||| || |||||||||||||||||||||||||
Sbjct 1681 GACAAAGACATATTAGACAAAAATTTTGGAGGGTATAATATATGGCTGGCTGCGGAAAAT 1740
Query 1738 GGAATGTTCGAAAAGCAGAC-AACTGGAGAATGGGTGACAAA-TATGCCTCAAAACGTGA 1795
||||||||||||||||| || || |||||||||||||| ||| ||||||||||||| |||
Sbjct 1741 GGAATGTTCGAAAAGCATACTAA-TGGAGAATGGGTGA-AAAGTATGCCTCAAAACATGA 1798
Query 1796 ACCTTGATTGGGTCGATGGTGTAAAGAATGTTTTTAAGTATTTCACTGATCGAACTCCAA 1855
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1799 ACCTTGATTGGGTCGATAGTGTAAAGAATGTTTTTAAGTACTTCACTGATCGAACTCCAA 1858
Query 1856 GATCGTACTTCGAAGCAAGCGAGACTTCGCTCGTATGGAATTATGAATATGCAGATGTTG 1915
|||||| | || || |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1859 GATCGTTCGTCAAATCAAGCGAGACTTCGCTTGTATGGAATTACGAATATGCAGATGTTG 1918
Query 1916 AATTTGGGAGAGCACAAGCAAGAGACTTGTTACAATACCTATGGGCAGGACCAATCTCTA 1975
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 1919 AATTTGGGAGAGCACAGGCAGGAGACTTGTTACAATACTTATGGGCAGGACCAATATCTA 1978
Query 1976 ATGCATCAGTTGATGTTGTTCGAGGAAACCATTCTGTTGAAGTCCATGCCATTGGTGAGA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 ATGCATCAGTTGATGTTGTTCGAGGAAACCATTCTGTTGAAGTCCATGCCATTGGTGAGA 2038
Query 2036 CTAAGGGGGCAGCAATTGGTCGTATTTTGGGAGAAATAGTGCACAGAAAATCTATGACCA 2095
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2039 CTAAGGGGGCAGCAATTGGTCGTATTTTGGGAGAAATAGTATACAGAAAATCTATGACCA 2098
Query 2096 CACCGATTGATTTTGTCTTTTGTAGTGGTTACTTCTTGGAGAAGGACGAAGACATTTACA 2155
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2099 CGCCGATTGATTTTGTATTTTGCAGTGGTTACTTCTTGGAGAAGGACGAAGACATTTACA 2158
Query 2156 CATTCTTCGAATCAAAAATCTTGTCGTCCAAGT 2188
||||||||||||||||||||||||| |||||||
Sbjct 2159 CATTCTTCGAATCAAAAATCTTGTCTTCCAAGT 2191
Score = 381 bits (206), Expect = 1e-104
Identities = 252/274 (92%), Gaps = 3/274 (1%)
Strand=Plus/Plus
Query 2193 GAACGGTCTCGACCTCAAGAAAGAGAATTACTTCTCTGCAGCCATTGGACAAGCTCGCAC 2252
||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2259 GAACGTTCTTGACCTCAAGAAAGAGAATTACTTCTCTGCAGCCGTTGGACAAGCTCGCAC 2318
Query 2253 AAAAGCTCGCTATGTCATAGACTCAGCTCACGGTGTTGTAGATTTGCTCCACAAGCTTGC 2312
|||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||
Sbjct 2319 AAAAGCTCGCTATGTCATTGACTCATCTCTCGATGTTGTAGATTTGCTCCACAAGCTTGC 2378
Query 2313 AGTTGTTGCAGATACAACAATGACTGACTCATTTTCTGATAGCGAAATATATGAGCCTCG 2372
||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2379 AGTTG---CAGATACTACAATGACTGACTCATTTTCTGATAGCGAATTATATGAGCCTCG 2435
Query 2373 CGATGCAAATGCAAATGAAAATTCGAAACGCTGGATCAATTCTGTCAGAAGAAGGAAAGT 2432
| ||| ||||| ||||| ||||| |||||||||||| ||||||||||||||||| ||| |
Sbjct 2436 CAATGAAAATGAAAATGCAAATTTGAAACGCTGGATAAATTCTGTCAGAAGAAGAAAAAT 2495
Query 2433 GGAAATTGGAGACACTGGGCAAATCGGCATGTAA 2466
||||||||||||||||||||| || |||||||||
Sbjct 2496 GGAAATTGGAGACACTGGGCAGATTGGCATGTAA 2529
> Ahg889395 jgi|Araly1|889395|Al_scaffold_0007_1381
Length=2385
Score = 970 bits (525), Expect = 0.0
Identities = 1141/1430 (80%), Gaps = 75/1430 (5%)
Strand=Plus/Plus
Query 27 AAGGCCAAGATTGCTTGTGGTGGCTAACAGGCTTCCGGTTTCTGCAAAGAGGACCGGGGA 86
||||||| || ||||||| ||| | | ||||||||| ||||||||||||| || ||
Sbjct 6 AAGGCCACGACTGCTTGTAGTGTCGATGTCGCTTCCGGTCACTGCAAAGAGGACTGGAGA 65
Query 87 AAATTCTTGGTCTCTGGA-AATGAGTCCTGGTGGTTTAGTCAGTGGTCTTCTAGGTAT-A 144
| | ||||||||| | | ||||||||||||||| |||| |||| |||||||||| | |
Sbjct 66 AGAGTCTTGGTCT-TTCACGATGAGTCCTGGTGGTCTAGTTAGTGCTCTTCTAGGTTTGA 124
Query 145 ACATCTCAATTTGATACCAAATGGGTTGGATGGCCCGGAGTTGATGTGCATGATGAAATT 204
| | ||||||| ||||||||| |||||||||| ||||| ||||| ||||||| |||
Sbjct 125 A-A---GAATTTGAGACCAAATGGATTGGATGGCCTGGAGTAGATGTTCATGATGCGATT 180
Query 205 GaaaaaaaTG-CACTCACTGAAT-CTCTAGCCG-AAATGAAGTGTATCCCTGTGTTCCT- 260
| ||||| | ||||| | | | | ||||| | ||| | | |||||||| ||||| ||
Sbjct 181 GGCAAAAA-GACACTCTC-CATTACCCTAGCTGAAAAGGGA-TGTATCCCAGTGTTTCTG 237
Query 261 TAATGGGGTTTTTGATCAGTACTACAATGGTTATTGCAATGGTA-TCTTGTGGCCAATTC 319
|| | || | |||||| ||||| ||||| || |||||| || || ||||||| |||
Sbjct 238 GAA-GAAGTGTGTGATCAATACTATAATGGCTACTGCAATAATATTC-TGTGGCCGATTT 295
Query 320 TTCATC-ACATGGG-ACTTCCACAAGAAGATCAG-CATGACACAAACCA-AACTTTCGAA 375
|||| | || |||| || |||| |||| ||| | | || | ||||| ||| | | |
Sbjct 296 TTCA-CTACTTGGGAAC-GCCACCAGAATATC-GTAACGATGC-AACCATAACATACCAG 351
Query 376 ACACAATATGATGCATACAAGAAAGCAAATCGAATGTTTCTTGATG-TCATAATAGA-CA 433
|||| ||||||||||||||||||||||||| ||| ||| |||||| | ||| ||| |
Sbjct 352 TCACAGTATGATGCATACAAGAAAGCAAATCAAATATTTTTTGATGTTGTTAA-AGAGC- 409
Query 434 ACTATGAAGAAGGAGATATTGTTTGGTGTCATGACTATCATCTCATGTTTCTTCCTCAAT 493
||||||||||||||||| | |||||||| ||||| |||||| ||||| ||||||||||||
Sbjct 410 ACTATGAAGAAGGAGATGTGGTTTGGTGCCATGATTATCATGTCATGCTTCTTCCTCAAT 469
Query 494 ACCTTAAAGAGTACAACAACAAAATCAAAGTTGGATGGTTTCTCCATTCACCATTTCCTT 553
| ||||| || ||||||| || || ||||||||||||||||||||| ||||||||||||
Sbjct 470 ATCTTAAGGAATACAACAGTAAGATGAAAGTTGGATGGTTTCTCCATACACCATTTCCTT 529
Query 554 CTTCTGAGGTCTACAAAACATTGCCCTCGCGGTCAGAGCTTCTTCGTGC-GATTCTTGCA 612
|||| ||| | |||||||||||||||||||| || || || |||||| | | ||||| |
Sbjct 530 CTTCCGAGATGTACAAAACATTGCCCTCGCGATCCGATCTGCTTCGTTCTG-TTCTTACT 588
Query 613 GCTGATTTACTTGGCTTCCATACATATGATTTTGCAAGACATTTCTTGAGTACATGCACT 672
||||||||| | || |||||||| |||||||||||||||||||| |||| | |||||| |
Sbjct 589 GCTGATTTAGTCGGTTTCCATACCTATGATTTTGCAAGACATTTTTTGAATGCATGCA-T 647
Query 673 -CGAATTCTTGGAGTTGAAGGAACA-CATGAAGGAGTTGTGTATCAAGGCAGAGTCACTC 730
| ||||||||||| |||| |||| | ||||||||||||| |||| || | ||||||||
Sbjct 648 GTGTATTCTTGGAGTGGAAGCAACATC-TGAAGGAGTTGTGGATCAGGGAAAAGTCACTC 706
Query 731 GAGTAGCTGTTTTTCCCATTGGAATAGATCCTGATCGGTTTATAAGA-ACATGT-AAGCT 788
|||||||||||||||||||||| ||||| ||||| ||||||||| | ||| || || ||
Sbjct 707 GAGTAGCTGTTTTTCCCATTGGGATAGAACCTGAGAGGTTTATAA-ACACAAGTGAA-CT 764
Query 789 CCCTGAAGTCACACAGCAAATGAATGA-GCTTCAAGAGAA-G-TTT-GCTGGCAAAAAGG 844
| |||||||| || | ||||| || | ||||| | || | ||| | ||| | ||||
Sbjct 765 CTCTGAAGTCGTTCAATACATGAA-GAAG-TTCAA-A-AACGATTTTGGTGGGAGAAAGT 820
Query 845 TGATATTAGGTGTTGATCGTCTTGATATGATCAAAGGGATCCCACA-AAAGTATCTTGCA 903
|||||||||||||||||||||| |||| |||||||||||| ||||| ||| |||| |||
Sbjct 821 TGATATTAGGTGTTGATCGTCTCGATACGATCAAAGGGATTCCACAGAAA-TATCAGGCA 879
Query 904 TTTGAGAAGTTTCTAGAAGAAAATCCATATTGGCGTGATAAAGTTGTGCTAGTGCAAATT 963
|||||||||||| |||| |||||| | ||||||||| |||||| || || | || |||
Sbjct 880 TTTGAGAAGTTTTTAGAGGAAAATGAAGATTGGCGTGGTAAAGTCATGTTACTTCAGATT 939
Query 964 GCAGTGCCAACAAGAAATGATGTCCCTGAATATCGAAAGCTCAAA-AGCCAA-GTCCATG 1021
||||| |||||||| |||| | | |||||||| |||| ||||| | |||| ||| ||
Sbjct 940 GCAGTACCAACAAGGAATGGTATTGGTGAATATCAAAAGATCAAAGA-CCAATGTC-ATT 997
Query 1022 GAC--TCGTTGGTCGCATAAACGGTCGTTTTGGTTCTGTCTCTTCTCTTCCAATCCAT-C 1078
|| | ||||| || || || |||||||||||||| ||||| || ||||||| || |
Sbjct 998 -ACCAT-GTTGGACGAATTAATGGTCGTTTTGGTTCCATCTCTGCTGTTCCAATA-ATTC 1054
Query 1079 ATCTGGATTGTTCTGTTGACTTCAA-CTACTTATGTGCAATATACGCAATTGCAGATGTA 1137
|||||||||||||| ||||||| || | | ||||| ||| | || || || ||||||||
Sbjct 1055 ATCTGGATTGTTCTATTGACTTTAATCAA-TTATGCGCACTCTATGCCATCACAGATGTA 1113
Query 1138 ATGCTTGTAACATCTTTGAGAGATGGAATGAATCTTGTTAGTTATGAATTTGTTGCTTGT 1197
| ||||||||||||||||||||||||||||| ||||| |||| ||||||| |||| ||
Sbjct 1114 TTACTTGTAACATCTTTGAGAGATGGAATGAACCTTGTGAGTTCTGAATTTATTGCCTGC 1173
Query 1198 CAAGAAGCC-AAAAAGGGGGTTCTTGTTCTCAGTGAGTTTGCAGGTGCTGGCCAGTCTCT 1256
||| ||| ||||||||| |||| |||| || ||||||||||||||||| ||||| ||
Sbjct 1174 CAAAAAGAAGAAAAAGGGG-TTCTCATTCTAAGCGAGTTTGCAGGTGCTGGACAGTCACT 1232
Query 1257 TGGTGTTGGAGCTCTTATTGTGAATCCTTGGGATGTTACAGAAGTTTCTTCTGCCATTAA 1316
||||| |||||||||| | |||||||||||| | ||| |||||| ||| ||||||||
Sbjct 1233 TGGTGCTGGAGCTCTTCTAGTGAATCCTTGGAACATTAAAGAAGTGTCTACTGCCATTGG 1292
Query 1317 AGAAGCTCTAAATATGCCAGC-TGAAGAAA-G-AGAAACAAGACACAGA-TCTAATTTTC 1372
|||||||||||||||| || | |||||||| | ||| | || ||| | | || |||||||
Sbjct 1293 AGAAGCTCTAAATATGTCA-CATGAAGAAAAGGAGAGA-AA-ACATAAAATC-AATTTTC 1348
Query 1373 AGTATGTGTGTACTCATTCTGCTGAAAAATGGG--GATTAGATTTCATGA 1420
|||||||| ||||||||| || | | |||| ||| ||||||||||
Sbjct 1349 AGTATGTGAAAACTCATTCTACTCAGCAGTGGGCAGAT--GATTTCATGA 1396
Score = 549 bits (297), Expect = 3e-155
Identities = 586/723 (81%), Gaps = 30/723 (4%)
Strand=Plus/Plus
Query 1463 GGAAAA-TCCCACTTCAACTTCCAGAACAAGATGTGATTCAACAATATTCGCAA-TCTAA 1520
|||||| ||||||| ||||||| ||||| ||||||||||||||||| || || |||||
Sbjct 1465 GGAAAAGCCCCACTTGAACTTCCTGAACATGATGTGATTCAACAATACTC-AAAGTCTAA 1523
Query 1521 CAATAGACTAATAA-TATTGGGTTTCTTTGGAACACTCGCAGAGCCAATG---AAT--AG 1574
||||||||| ||| | || || |||| |||||| ||| | |||| ||| ||| ||
Sbjct 1524 CAATAGACTGCTAATTCTT-GGATTCTATGGAACGCTCACTCAGCCGATGAAAAATCAAG 1582
Query 1575 TG-G-A-A--CTAAGGAAATGGATCTTAAACTAAACCCAGAGCTAAAAGGAACACTGAAA 1629
| | | | | | || |||| ||||| |||| ||||| || | |||| || ||| |||
Sbjct 1583 AGAGAAGAGGCGACGG-AATGAATCTTGAACTGCACCCACAGGTTAAAGAAAGACTCAAA 1641
Query 1630 GCATTGTGCAATGATCCAAAAACAACAGTAGTTGTATTGAGTAGAAGTGGCAAAAA-CAT 1688
| ||| |||| |||||||||||||||||||||||| |||| |||||| | ||||| |||
Sbjct 1642 GAATTATGCAGTGATCCAAAAACAACAGTAGTTGTCCTGAGCAGAAGT-GAAAAAAGCAT 1700
Query 1689 ATTAAACAAGAATTTTGGAGAGTCTAATATATGGCTGGCTGCGGAAAATGGAATG-TTCG 1747
||| | || || |||||||| | ||| || ||| | ||||| |||||||| ||| |||
Sbjct 1701 ATTGGATAAAAACTTTGGAGAATATAACATGTGGTTAGCTGCTGAAAATGGGATGTTTC- 1759
Query 1748 AAAAGCAGACAACTGGAGAATGGGTGACAA-ATATGCCTCAAAACGTGAACCTTGATTGG 1806
|| ||| |||| ||||||||||||||||| | || || || || ||||| |||| |||
Sbjct 1760 TAAGGCATACAAGTGGAGAATGGGTGACAAGA-ATTCCAGAACACATGAACTTTGAATGG 1818
Query 1807 GTCGATGGTGTAAAGAATGTTTTTAAGTATTTCACTGATCGAACTCCAAGATCGTACT-T 1865
| |||||||| ||| ||||||| ||||| |||||||| |||||||| |||| || | |
Sbjct 1819 ATTGATGGTGTCAAGCATGTTTTCAAGTACTTCACTGAAAGAACTCCAGGATCATA-TCT 1877
Query 1866 CGAAGCAAGCGAGACTTCGCTCGTATGGAATTATGAATATGCAGATGTTGAATTTGGGAG 1925
|||| |||||||||||||||| |||||||| || ||||||||||||| ||||||||||||
Sbjct 1878 CGAAACAAGCGAGACTTCGCTTGTATGGAACTACGAATATGCAGATGCTGAATTTGGGAG 1937
Query 1926 AGCACAAGCAAGAGACTTGTTACAATACCTATGGGCAGGACCAATCTCTAATGCATCAGT 1985
||| |||||||||||| |||||||| || | |||||||||||||||||||||||||||||
Sbjct 1938 AGCTCAAGCAAGAGACATGTTACAACACTTGTGGGCAGGACCAATCTCTAATGCATCAGT 1997
Query 1986 TGATGTTGTTCGAGGAAACCATTCTGTTGAAGTCCATGCCATTGGTGAGACTAAGGGG-G 2044
||||||||||||||| ||| |||||||||||||||||| |||||| ||| ||||| |
Sbjct 1998 GGATGTTGTTCGAGGAGGCCACTCTGTTGAAGTCCATGCCGTTGGTGTGACAAAGGGAAG 2057
Query 2045 CAGCAATTG-GTCGTATTTTGGGAGAAATAGTGCACAGAAAA-TCTATGACCACACCGAT 2102
||||| | | |||||| | |||| ||||||||||| | || || ||||| |||| ||
Sbjct 2058 T-GCAATGGAG-CGTATTCTCGGAGGAATAGTGCACA-ACAAGTCAATGACTGCACCAAT 2114
Query 2103 TGATTTTGTCTTTTGTAGTGGTTACTTCTTGGAGAAGGACGAAGACATTTACACATTCTT 2162
||||| |||||| || | ||||| ||||||| ||| ||||||||| |||||||||||||
Sbjct 2115 TGATTATGTCTTGTGCATTGGTTGTTTCTTGGGGAAAGACGAAGACGTTTACACATTCTT 2174
Query 2163 CGA 2165
|||
Sbjct 2175 CGA 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92940197800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5