BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17010.1
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920607 jgi|Araly1|920607|scaffold_101888.1 920 0.0
Ahg492303 jgi|Araly1|492303|fgenesh2_kg.7__1736__AT4G25300.1 876 0.0
Ahg911502 jgi|Araly1|911502|Al_scaffold_0001_1756 571 4e-162
> Ahg920607 jgi|Araly1|920607|scaffold_101888.1
Length=1119
Score = 920 bits (498), Expect = 0.0
Identities = 917/1115 (82%), Gaps = 45/1115 (4%)
Strand=Plus/Plus
Query 80 TCCAAGGAGAAGAAAGCCCCCATGGAAGCCAAAGAAGAAACCCCGTGGAGCTCTATTTTA 139
||||| || ||| ||||| ||||||| | |||| | | | | |||||||||||| ||
Sbjct 3 TCCAA-GA-AAG-AAGCCGACATGGAAACAAAAGGGGCAGCACAGTGGAGCTCTATCCTA 59
Query 140 GTTCCTTCTGTTCAGGAGATGGTGAAGGATAAGATGATCACGACCGTTCCTCCCAGATAT 199
|||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||| |||
Sbjct 60 GTTCCTTCTGTTCAAGAGATGGTTAAGGAGAAGACGATCACGACCGTTCCTCCCAGGTAT 119
Query 200 GTTCGGTATGATCAAGACAAAACTGAAGTCGTCGTCCATGATTCTGGCCTCATATCCGAG 259
|| |||| |||||||||||||||| |||||| | |||||| || | | | |||||
Sbjct 120 GTCCGGTCTGATCAAGACAAAACTAAAGTCG--AT-GATGATTTTGATGTGAAAACCGAG 176
Query 260 ATCCCCATCATCGA-CATGAATCGGT-TGTGTTCTTCTACCGCCGTGGACTCTGAGGTTG 317
||||| |||||||| | |||| | || |||||||||| ||| || |||| || |||||||
Sbjct 177 ATCCCAATCATCGATC-TGAAGC-GTCTGTGTTCTTCAACCACCATGGATTCCGAGGTTG 234
Query 318 AGAAACTCGACTTTGCTTGCAAAGAATATGGATTTTTCCAGCTTGTAAACCATGGAATAG 377
||||||||||||| ||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 235 AGAAACTCGACTTCGCTTGCAAAGAGTGGGGATTTTTCCAGCTTGTAAACCATGGAACAG 294
Query 378 ACCCAAGTTTCTTGGACAAAATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGG 437
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 295 AACCAAGTTTCTTGGACAAAGTAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGG 354
Query 438 AAGaaaaaaaGAAGTTGTGGCAGAC-ACCAGCGGTGATGGAAGGGTTT-GGACAAGCTTT 495
||||||| |||||||| |||||| | ||||| | ||| ||||| ||| |||||||||||
Sbjct 355 AAGAAAAGAAGAAGTTCTGGCAG-CGACCAGATGAGATTGAAGG-TTTCGGACAAGCTTT 412
Query 496 TGTGGTTTCAGAAGATCAGAAACTCGACTGGGCAGATTTATTCTTCCTTATAATGCAACC 555
|||||||||||||||||||||||| || |||||||| || || |||| || | ||||||
Sbjct 413 TGTGGTTTCAGAAGATCAGAAACTAGATTGGGCAGACTTGTTTTTCCATACAGTGCAACA 472
Query 556 TGTTCAATTACGCAAGCGTCACTTGTTCCCCAAGCTACCTCTTCCCTTTAGGGATACGTT 615
||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 473 TGTTCAATTACGCAAGCCTCACTTGTTCCCCAAGCTACCTCTTTCCTTTAGAGATACATT 532
Query 616 AGATATGTATTCCACTCGA-GTAAAGAGTATAGCTAAGATCTTACTAGCGAAAATGGCGA 674
|| | |||||| || || || |||| |||||||||||||| ||||||||||||| |
Sbjct 533 GGAGACGTATTCTGCT-GAAGTGCAGAGCGTAGCTAAGATCTTAATAGCGAAAATGGC-A 590
Query 675 AA-GCCTT-GCAGATCAAGCCAGAGGAGGTAGAAGAAATA-TTTGGTGATGAT-AT--GA 728
| ||| | | ||| ||| |||||||| | ||| || | |||| ||||| | || ||
Sbjct 591 AGCGCCCTAG-AGACCAAACCAGAGGAACTGGAA-AAGTTGTTTGATGATGTTGATTCGA 648
Query 729 TGCAGAGTATGAGGATGAACTACTATCCC-CCGTGTCCACAACCTA-ATCTGGTTA-CGG 785
| || |||||||||||||| ||||| ||| || ||||||||||| | ||| |||| |||
Sbjct 649 TTCAAAGTATGAGGATGAATTACTA-CCCACCATGTCCACAACC-AGATCAAGTTATCGG 706
Query 786 GTCTAATTCCGCATTCCGATGCAGTCGGGCTCACCATACTTTTGCAGGTGAATGAAGTTG 845
||||| |||||||| ||| | ||||| |||||| |||| ||||||||||||||||||
Sbjct 707 -TCTAACCCCGCATTCTGATTCGGTCGGACTCACCGTACTGATGCAGGTGAATGAAGTTG 765
Query 846 ACGGTCTCCAAATCAAGAAAAATGGCAAGTGGTTTTTTGTCAAACCTCTCCAAAATGCTT 905
| |||||||||||||||||| |||| || ||| || ||| |||||| ||| ||||||||
Sbjct 766 AAGGTCTCCAAATCAAGAAAGATGGGAAATGGGTTCCTGTTAAACCTATCCCAAATGCTT 825
Query 906 TCATTGTCAATGTTGGGGACGTGTTAGAGATCATAACGAACGGGACATACCGAAGCATCG 965
|||| |||||| |||| ||||| |||||||||||||| || ||||||||| |||| || |
Sbjct 826 TCATCGTCAATATTGGAGACGTCTTAGAGATCATAACTAATGGGACATACAGAAGTATAG 885
Query 966 AGCACCG-GGCAATGGTGAACTTG-GAGAAAGAGAGGCTCTCCATTGCGACATTTCACAA 1023
|||| || || | | ||||| || ||||||||||||||||| ||||| || ||||||||
Sbjct 886 AGCATCGTGG-AGTTGTGAA-TTCAGAGAAAGAGAGGCTCTCTATTGCAACGTTTCACAA 943
Query 1024 CACGGGAATGGATAAAGAAATTGGTCCGGCGAGAAGCCTTGTTCAAAGACAAGAGGCTGC 1083
||||||| |||| ||| ||||||| || | |||||| ||| |||||||| ||| |||
Sbjct 944 TGTGGGAATGTATAAGGAAGTTGGTCCCGCAAAAAGCCTCGTTGAAAGACAAAAGGTTGC 1003
Query 1084 AAAGTTT-AGAAGCCTGAAAACT-AAAGACTACTTGA-ATGGCTTGTTTTCCCGTGAA-C 1139
|| | || | ||| |||| | | ||||| || | | |||| ||||| || ||| | |
Sbjct 1004 AA-GATTCAAAAGGCTGACCA-TGAAAGAGTA-TAGCGATGGTTTGTTCTCTCGT-ACGC 1059
Query 1140 TCAAAGG-AAAGGCTTATCTTGATGCTATGAGAAT 1173
|| | || |||| ||||||| |||||| |||||||
Sbjct 1060 TCGACGGGAAAG-CTTATCTCGATGCTTTGAGAAT 1093
> Ahg492303 jgi|Araly1|492303|fgenesh2_kg.7__1736__AT4G25300.1
Length=1130
Score = 876 bits (474), Expect = 0.0
Identities = 908/1111 (82%), Gaps = 55/1111 (5%)
Strand=Plus/Plus
Query 87 AGAAGAAAGCCCCCATGGAA-GCCAAAGAAGAAACCCCGTGGAGCTCTATTTTAGTTCCT 145
||||| |||| |||||||| | ||||| || || ||| ||||||||| ||||||||
Sbjct 14 AGAAG-AAGCGGCCATGGAAGGTCAAAG-AGCAA-CCC--AAAGCTCTATTATAGTTCCT 68
Query 146 TCTGTTCAGGAGATGGTGAAGGATAAGATGATCACGACCGTTCCTCCCAGATATGTTCGG 205
|||||||| |||||||||||||| || ||||||||| | |||||||| | ||||| |||
Sbjct 69 TCTGTTCAAGAGATGGTGAAGGAGAATATGATCACGGCGGTTCCTCCGTGGTATGTACGG 128
Query 206 TATGATCAAGACAAAACTGAAGTCGTCGTCCAT-GATTCTGGCCTCA-TATCCGAGATCC 263
| ||||||||||||| ||| || | | || | |||||||| || | | || ||||||
Sbjct 129 TCTGATCAAGACAAAGCTG-AG--ATAG-CCGTGGATTCTGGTCTAAGAAACC-AGATCC 183
Query 264 CCATCATCGACATGAATCGGT-TGTGTTCTTCTACC-GCCGTGGACTCTGAGGTTGAGAA 321
| ||||| ||||||| || | |||||||| | ||| | | |||| |||||| ||| ||
Sbjct 184 CAATCATAGACATGAGTC-TTCTGTGTTCTCCAACCTG-CATGGATTCTGAGACTGACAA 241
Query 322 ACTCGACTTTGCTTGCAAAGAATATGGATTTTTCCAGCTTGTAAACCATGGAATAGACCC 381
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 242 GCTCGACTTTGCTTGCAAAGAATGGGGATTTTTCCAGCTTGTAAACCATGGAATGGACTC 301
Query 382 AAGTTTCTTGGACAAAAT-AAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAG 440
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 302 AAGTTTCTTGGACAAATTCAAA-ACAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAG 360
Query 441 aaaaaaaGAAGTTGTGGCAGACA-CCAGCGGTGATG--GAAGGGTTTGGACAAGCTTTTG 497
| ||||||||| ||||||| ||| || ||||||| ||||||||||||||||||||||
Sbjct 361 AGAAAAAGAAGCTGTGGCA-ACAACC--CGGTGATATAGAAGGGTTTGGACAAGCTTTTG 417
Query 498 TGGTTTCAGAAGATCAGAAACTCGACTGGGCAGATTTATTCTTCCTTATAATGCAACCTG 557
| |||| |||||| ||||||||||| |||||||| | |||||||||| ||||||||||
Sbjct 418 TAGTTTTAGAAGAGCAGAAACTCGATTGGGCAGACATGTTCTTCCTTACCATGCAACCTG 477
Query 558 TTCAATTACGCAAGCGTCACTTGTTCCCCAAGCTACCTCTTCCCTTTAGGGATACGTTAG 617
||||||| ||||||| ||||||||| |||||| ||||||||||||| || ||||| |||
Sbjct 478 TTCAATTGCGCAAGCCTCACTTGTTTCCCAAGTTACCTCTTCCCTTCAGAGATACACTAG 537
Query 618 ATATGTATTCCACTCGA-GT-AAAGAGTATAGCTAA-GATCTTACTAGCGAAAATGGCGA 674
|||||||||| || || || ||| || |||||||| | ||||| | |||||||| ||||
Sbjct 538 ATATGTATTCGGCT-GAAGTGAAA-AGCATAGCTAAAG-TCTTATTTGCGAAAATAGCGA 594
Query 675 AAGC-CTTGCAGATCAAGCCAGAGGAGGTAGAAGAAATAT-TTGGT-GATGA-T-ATGAT 729
|| || | ||||||| || ||||| | ||| || | | || | ||||| | | ||
Sbjct 595 GTGCACT-GAAGATCAAACCCGAGGAAATGGAA-AAGT-TGTTCGACGATGAGTTAGGA- 650
Query 730 GCAGAGTATGAGGATGAACTACTATCCC-CCGTGTCCACAACCTAATCTGGTTACGGGTC 788
||||| || |||||||| ||||| ||| || |||||| | || || ||||| |||
Sbjct 651 -CAGAGAATTAGGATGAATTACTA-CCCGCCTTGTCCAGAGCCCGATAAGGTTATTGGTT 708
Query 789 TAATTCCGCATTCCGATGC-AGTCGGG-CTCACCATACTTTTGCAGGTGAATGAAGTTGA 846
||| ||||||||||||||| | | || || |||||||| |||||||| || ||||||||
Sbjct 709 TAACTCCGCATTCCGATGCCA--CAGGACTTACCATACTGTTGCAGGTTAACGAAGTTGA 766
Query 847 CGGTCTCCAAATCAAGAAAAATGGCAAGTGGTTTTTTGTCAAACCTCTCCAAAATGCTTT 906
|||||||||||||||||| ||||||||||| ||| |||||||||||||| |||||||||
Sbjct 767 AGGTCTCCAAATCAAGAAAGATGGCAAGTGGGTTTCTGTCAAACCTCTCCCAAATGCTTT 826
Query 907 CATTGTCAATGTTGGG-GACGTGTTAGAGATCATAACGAACGGGACATACCGAAGCATCG 965
| |||||||||| ||| ||| | ||||||||||||||||| |||||||||||||| || |
Sbjct 827 CGTTGTCAATGT-GGGAGACATCTTAGAGATCATAACGAATGGGACATACCGAAGTATAG 885
Query 966 AGCACCG-GGCAATGGTGAACTTGGAGAAAGAGAGGCTCTCCATTGCGACATTTCACAAC 1024
|||| || || | | ||||||| |||||||||||||| || | ||||||||||||||
Sbjct 886 AGCATCGCGG-AGTTGTGAACTCAGAGAAAGAGAGGCTTTCTGTGGCGACATTTCACAAT 944
Query 1025 ACGGGAATGGATAAAGAAATTGGTCCGGCGAGAAGCCTTGTTCAAAGACA-AGAGGCTGC 1083
|| ||||||| |||||||||||||||| |||||| || || |||| || | |||||||
Sbjct 945 ACAGGAATGGGTAAAGAAATTGGTCCGATGAGAAGTCTCGTGGAAAGGCACA-AGGCTGC 1003
Query 1084 AAAGTTT-AGAAGCCTGAAAACTAAAGACTACTTGAATGGCTTGTTTTCCCGTGAACTCA 1142
| ||| | |||| ||| ||| | || || || ||||||||||| |||||||| |||
Sbjct 1004 ATT-TTTCAAAAGCGTGACCACTGAGGAGTATTTCAATGGCTTGTTCTCCCGTGAGCTCG 1062
Query 1143 AAGGAAAGGCTTATCTTGATGCTATGAGAAT 1173
| ||||| ||||| ||||||| |||||||||
Sbjct 1063 ATGGAAAAGCTTACCTTGATGTTATGAGAAT 1093
> Ahg911502 jgi|Araly1|911502|Al_scaffold_0001_1756
Length=801
Score = 571 bits (309), Expect = 4e-162
Identities = 362/386 (94%), Gaps = 10/386 (3%)
Strand=Plus/Plus
Query 101 ATGGAAGCCAAAGAAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTTCAGGAGATG 160
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGAAGCCAAAGGAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTTAAGGAGATG 60
Query 161 GTGAAGGATAAGATGATCACGACCGTTCCTCCCAGATATGTTCGGTATGATCAAGACAAA 220
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GTGAAGGATAAGATGATCACGACCGTTCCTCCCAGGTATGTTCGGTATGATCAAGACAAA 120
Query 221 ACTGAAGTCGTCGTCCATGATTCTGGCCTCATATCCGAGATCCCCATCATCGACATGAAT 280
|||||||||||| |||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 121 GCTGAAGTCGTCG---ATGATTCTGGTCTCATATCCGAGATCTCAATCATCGACATGAAG 177
Query 281 CGGTTGTGTTCT-TCTACCGCCGTGGACTCTGAGGTT--G-AGAAACTCGACTTTGCTTG 336
|||||||||| | |||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct 178 CGGTTGTGTT-TGTCTACCGCCGTGGACTCTGAGGTTGGGAACAAACTCGACTTCGCTTG 236
Query 337 CAAAGAATATGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTGGACAA 396
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAAAGAATGTGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTGGACAA 296
Query 397 AATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGaaaaaaaGAAGTTGTG 456
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 297 AATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAGAGAAAGAAGTTGTG 356
Query 457 GCAGACAC-CAGCGGTGATGGAAGGG 481
|||| || |||||||||||||||||
Sbjct 357 GCAG-CAATCAGCGGTGATGGAAGGG 381
Score = 383 bits (207), Expect = 2e-105
Identities = 230/241 (95%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 934 GATCATAACGAACGGGACATACCGAAGCATCGAGCACCGGGCAATGGTGAACTTGGAGAA 993
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 558 GATCATAACGAACGGGACATACCGAAGCATCGAGCATCGGGCAGTGGTGAACTTGGAGAA 617
Query 994 AGAGAGGCTCTCCATTGCGACATTTCACAACACGGGAATGGATAAAGAAATTGGTCCGGC 1053
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 618 AGAGAGGCTCTCCATTGCGACATTTCATAACACGGGACTGGATAAAGAAATTGGTCCGGC 677
Query 1054 GAGAAGCCTTGTTCAAAGACAAGAGGCTGCAAAGTTTAGAAGCCTGAAAACTAAAGACTA 1113
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GAGAACCCTTGTTCAAGGGCAAGAGGCTGCAAAGTTTAGAAGCCTGAAAACTAAAGACTA 737
Query 1114 CTTGAATGGCTTGTT-TTCCCGTGAACTCAAAGGAAAGGCTTATCTTGATGCTATGAGAA 1172
||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 738 CTTGAATGGCTTGTTCTTCC-GTGAACTCAAAGGAAAATCTTATCTTGATGCTATGAGAA 796
Query 1173 T 1173
|
Sbjct 797 T 797
Score = 261 bits (141), Expect = 1e-68
Identities = 166/178 (93%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 606 GGGATACGTTAGATATGTATTCCACTCGAGTAAAGAGTATAGCTAAGATCTTACTAGCGA 665
||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 380 GGGATACATTAGATATGTATTACACTCAAGTAAAGAGTATAGCTAAGATCTTACTAGCGA 439
Query 666 AAATGGCGAAAGCCTTGCAGATCAAGCCAGAGGAGGTAGAAGAAATATTTGGTGATGATA 725
||||||||| |||| | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 440 AAATGGCGAGAGCCCTACAGATCAAACCAGAGGAGATAGAAGAAATATTTGGTGATGATA 499
Query 726 TGATGCAGAGTATGAGGATGAACTACTATCCCCCGTGTCCACAACCTAATCTGGTTAC 783
|||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||
Sbjct 500 TGATGCAGAGTATGAGAATGAACTACT-TCCCCCGTGTCCACAACCCAATCAGGTTAC 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50703479610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5