BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17020.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920607 jgi|Araly1|920607|scaffold_101888.1 1796 0.0
Ahg492303 jgi|Araly1|492303|fgenesh2_kg.7__1736__AT4G25300.1 933 0.0
Ahg911502 jgi|Araly1|911502|Al_scaffold_0001_1756 383 2e-105
> Ahg920607 jgi|Araly1|920607|scaffold_101888.1
Length=1119
Score = 1796 bits (972), Expect = 0.0
Identities = 1072/1121 (96%), Gaps = 4/1121 (0%)
Strand=Plus/Plus
Query 33 CGTCCAGGAAAGAAGCCGACATGGAAGCAAAAGGGGCAGCACAGTGGAGCTCTATCCTAG 92
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CGTCCAAGAAAGAAGCCGACATGGAAACAAAAGGGGCAGCACAGTGGAGCTCTATCCTAG 60
Query 93 TTCCATCCGTTCAAGAGATGGTTAAGGAGAAGACGATCACGACCGTTCCTCCTAGGTACG 152
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 61 TTCCTTCTGTTCAAGAGATGGTTAAGGAGAAGACGATCACGACCGTTCCTCCCAGGTATG 120
Query 153 TCCGGTCTGATCAAGACAAAACTGAAGTCGATGATGATTTTGATGTGAAAATTGAGATCC 212
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 121 TCCGGTCTGATCAAGACAAAACTAAAGTCGATGATGATTTTGATGTGAAAACCGAGATCC 180
Query 213 CAATCATCGATATGAAGCGTTTGTGTTCTTCAACCACCATGGATTCTGAGGTTGAGAAAC 272
||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 181 CAATCATCGATCTGAAGCGTCTGTGTTCTTCAACCACCATGGATTCCGAGGTTGAGAAAC 240
Query 273 TCGACTTCGCTTGCAAAGAGTGGGGATTTTTCCAGCTTGTAAACCATGGAATAG-ACTCA 331
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 241 TCGACTTCGCTTGCAAAGAGTGGGGATTTTTCCAGCTTGTAAACCATGGAACAGAAC-CA 299
Query 332 AGTTTCTTGGACAAAGTAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAA 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGTTTCTTGGACAAAGTAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAA 359
Query 392 AAGAAGAAGTTCTGGCAGCGACCAGATGAGATAGAAGGTTTCGGACAAGCTTTTGTGGTT 451
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AAGAAGAAGTTCTGGCAGCGACCAGATGAGATTGAAGGTTTCGGACAAGCTTTTGTGGTT 419
Query 452 TCAGAAGATCAGAAACTAGATTGGGCAGACTTGTTCTTCCATACCGTGCAACCA-GTTGA 510
||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||| |
Sbjct 420 TCAGAAGATCAGAAACTAGATTGGGCAGACTTGTTTTTCCATACAGTGCAAC-ATGTTCA 478
Query 511 ATTACGCAAGCCTCACTTGTTCCCCAAGCTACCTCTTCCCTTTAGAGATACACTGGAGAT 570
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 479 ATTACGCAAGCCTCACTTGTTCCCCAAGCTACCTCTTTCCTTTAGAGATACATTGGAGAC 538
Query 571 GTATTCTTCTGAAGTGCAGAGCGTAGCTAAGATCTTAATAGCGAAAATGGCAAGAGCCCT 630
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 GTATTCTGCTGAAGTGCAGAGCGTAGCTAAGATCTTAATAGCGAAAATGGCAAGCGCCCT 598
Query 631 AGAGATCAAACCAGAGGAACTGGAAAAGTTGTTTGATGATGTTGATTCGGTTCAAAGTAT 690
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 AGAGACCAAACCAGAGGAACTGGAAAAGTTGTTTGATGATGTTGATTCGATTCAAAGTAT 658
Query 691 GAGGATGAATTACTACCCACCATGCCCACAACCAGATCAGGTTATTGGTCTAACCCCGCA 750
|||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 659 GAGGATGAATTACTACCCACCATGTCCACAACCAGATCAAGTTATCGGTCTAACCCCGCA 718
Query 751 TTCTGATTCGGTCGGACTCACTGTACTGATGCAAGTGAATGACGTTGAAGGTCTCCAAAT 810
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 719 TTCTGATTCGGTCGGACTCACCGTACTGATGCAGGTGAATGAAGTTGAAGGTCTCCAAAT 778
Query 811 CAAGAAAGATGGGAAATGGGTTCCTGTTAAACCCCTCCCAAATGCTTTCATTGTCAATAT 870
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 779 CAAGAAAGATGGGAAATGGGTTCCTGTTAAACCTATCCCAAATGCTTTCATCGTCAATAT 838
Query 871 TGGAGACGTCTTAGAGATCATAACTAATGGGACATACCGAAGCATAGAGCATCGCGGAGT 930
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 839 TGGAGACGTCTTAGAGATCATAACTAATGGGACATACAGAAGTATAGAGCATCGTGGAGT 898
Query 931 TGTGAATTCAGAGAAAGAGAGGCTCTCTATTGCAACGTTTCACAATGTGGGAATGTATAA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGTGAATTCAGAGAAAGAGAGGCTCTCTATTGCAACGTTTCACAATGTGGGAATGTATAA 958
Query 991 AGAAGTTGGTCCTGCAAAAAGCCTAGTTGAAAGACAAAAGGTTGCAAGATTCAAAAGGCT 1050
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 GGAAGTTGGTCCCGCAAAAAGCCTCGTTGAAAGACAAAAGGTTGCAAGATTCAAAAGGCT 1018
Query 1051 GACCATGAAAGAGTATAACGATGGTTTGTTCTCTCGTACTCTCGACGGAAAAGCTTATCT 1110
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1019 GACCATGAAAGAGTATAGCGATGGTTTGTTCTCTCGTACGCTCGACGGGAAAGCTTATCT 1078
Query 1111 AGATGCTTTGAGAATCTAAAGAGAGCAATGCCTTGTCGCCC 1151
||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1079 CGATGCTTTGAGAATCTAAAGAAAGCAATGCCTTGTGGCCC 1119
> Ahg492303 jgi|Araly1|492303|fgenesh2_kg.7__1736__AT4G25300.1
Length=1130
Score = 933 bits (505), Expect = 0.0
Identities = 888/1069 (83%), Gaps = 41/1069 (4%)
Strand=Plus/Plus
Query 80 AGCTCTATCCTAGTTCCATCCGTTCAAGAGATGGTTAAGGAGAAGACGATCACGACCGTT 139
|||||||| ||||||| || |||||||||||||| |||||||| | ||||||| | |||
Sbjct 51 AGCTCTATTATAGTTCCTTCTGTTCAAGAGATGGTGAAGGAGAATATGATCACGGCGGTT 110
Query 140 CCTCC-TAGGTACGTCCGGTCTGATCAAGACAAAACT--GA-AGTCGATGATGATTTTGA 195
||||| | |||| || |||||||||||||||||| || || || || || |||| ||
Sbjct 111 CCTCCGT-GGTATGTACGGTCTGATCAAGACAAAGCTGAGATAGCCG-TG--GATTCTGG 166
Query 196 TGTGAA-AATTGAGATCCCAATCATCGATATGAAG-CGTT-TGTGTTCTTCAACCACCAT 252
| | || || ||||||||||||| || ||| || | || |||||||| ||||| |||
Sbjct 167 TCT-AAGAAACCAGATCCCAATCATAGACATG-AGTC-TTCTGTGTTCTCCAACCTGCAT 223
Query 253 GGATTCTGAGGTTGAGAAACTCGACTTCGCTTGCAAAGAGTGGGGATTTTTCCAGCTTGT 312
|||||||||| ||| || |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 224 GGATTCTGAGACTGACAAGCTCGACTTTGCTTGCAAAGAATGGGGATTTTTCCAGCTTGT 283
Query 313 AAACCATGGAATAGACTCAAGTTTCTTGGACAAAGT-AAAGTCAGAGATTCAAGATTTCT 371
|||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 284 AAACCATGGAATGGACTCAAGTTTCTTGGACAAATTCAAA-ACAGAGATTCAAGATTTCT 342
Query 372 TCAACCTTCCCATGGAAGA-AAAGAAGAAGTTCTGGCAGCGACCAGATGAGATAGAAGG- 429
||||||||||||||||||| ||| |||||| | ||||| | ||| | ||| ||||||||
Sbjct 343 TCAACCTTCCCATGGAAGAGAAA-AAGAAGCTGTGGCAACAACCCGGTGATATAGAAGGG 401
Query 430 TTTCGGACAAGCTTTTGTGGTTTCAGAAGATCAGAAACTAGATTGGGCAGACTTGTTCTT 489
||| |||||||||||||| |||| |||||| |||||||| |||||||||||| |||||||
Sbjct 402 TTT-GGACAAGCTTTTGTAGTTTTAGAAGAGCAGAAACTCGATTGGGCAGACATGTTCTT 460
Query 490 CCATACCGTGCAACCAGTTGAATTACGCAAGCCTCACTTGTTCCCCAAGCTACCTCTTCC 549
|| |||| ||||||| ||| |||| ||||||||||||||||| |||||| ||||||||||
Sbjct 461 CCTTACCATGCAACCTGTTCAATTGCGCAAGCCTCACTTGTTTCCCAAGTTACCTCTTCC 520
Query 550 CTTTAGAGATACACTGGAGATGTATTCTTCTGAAGTGCAGAGCGTAGCTAA-GATCTTAA 608
||| ||||||||||| || |||||||| |||||||| | ||| ||||||| | |||||
Sbjct 521 CTTCAGAGATACACTAGATATGTATTCGGCTGAAGTGAAAAGCATAGCTAAAG-TCTTAT 579
Query 609 TAGCGAAAATGGCAAGAGCCCTAGA-GATCAAACCAGAGGAACTGGAAAAGTTGTTTGAT 667
| |||||||| || || || || || ||||||||| |||||| ||||||||||||| ||
Sbjct 580 TTGCGAAAATAGCGAGTGCACT-GAAGATCAAACCCGAGGAAATGGAAAAGTTGTTCGAC 638
Query 668 GATGTTGATTCGGTTCAAAGTATGAGGATGAATTACTACCCACCATGCCCACAACCAGAT 727
|||| | || || || || || ||||||||||||||||| || || ||| | || |||
Sbjct 639 GATGA-G-TTAGGA-CAGAGAATTAGGATGAATTACTACCCGCCTTGTCCAGAGCCCGAT 695
Query 728 CAGGTTATTGGTCTAACCCCGCATTCTGATTCGGTC-GGACTCACTGTACTGATGCAAGT 786
||||||||||| |||| |||||||| ||| | | ||||| || ||||| |||| ||
Sbjct 696 AAGGTTATTGGTTTAACTCCGCATTCCGATGCCA-CAGGACTTACCATACTGTTGCAGGT 754
Query 787 GAATGACGTTGAAGGTCTCCAAATCAAGAAAGATGGGAAATGGGTTCCTGTTAAACCCCT 846
|| || ||||||||||||||||||||||||||||| || |||||| |||| ||||| ||
Sbjct 755 TAACGAAGTTGAAGGTCTCCAAATCAAGAAAGATGGCAAGTGGGTTTCTGTCAAACCTCT 814
Query 847 CCCAAATGCTTTCATTGTCAATATTGGAGACGTCTTAGAGATCATAACTAATGGGACATA 906
||||||||||||| |||||||| | |||||| |||||||||||||||| |||||||||||
Sbjct 815 CCCAAATGCTTTCGTTGTCAATGTGGGAGACATCTTAGAGATCATAACGAATGGGACATA 874
Query 907 CCGAAGCATAGAGCATCGCGGAGTTGTGAATTCAGAGAAAGAGAGGCTCTCTATTGCAAC 966
|||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | || ||
Sbjct 875 CCGAAGTATAGAGCATCGCGGAGTTGTGAACTCAGAGAAAGAGAGGCTTTCTGTGGCGAC 934
Query 967 GTTTCACAATGTGGGAATGTATAAAGAAGTTGGTCC--TGCAAAAAGCCTAGTTGAAAGA 1024
||||||||| |||||| ||||||| ||||||| || | || | || || |||||
Sbjct 935 ATTTCACAATACAGGAATGGGTAAAGAAATTGGTCCGATG-AGAA-GTCTCGTGGAAAGG 992
Query 1025 CAAAAGGTTGCAAGATTCAAAAG-GCTGACCA-TGAAAGAGTATAACGATGGTTTGTTCT 1082
|| |||| |||| |||||||| | |||||| ||| |||||| | |||| |||||||
Sbjct 993 CACAAGGCTGCATTTTTCAAAAGCG-TGACCACTGAG-GAGTATTTCAATGGCTTGTTCT 1050
Query 1083 CTCGT-ACTCTCGACGGAAAAGCTTATCTAGATGCTT-TGAGAATCTAA 1129
| ||| | ||||| ||||||||||| || |||| || |||||||||||
Sbjct 1051 CCCGTGAG-CTCGATGGAAAAGCTTACCTTGATG-TTATGAGAATCTAA 1097
> Ahg911502 jgi|Araly1|911502|Al_scaffold_0001_1756
Length=801
Score = 383 bits (207), Expect = 2e-105
Identities = 328/385 (85%), Gaps = 13/385 (3%)
Strand=Plus/Plus
Query 53 ATGGAAGCAAAAGGGGCAGCACAGTGGAGCTCTATCCTAGTTCCATCCGTTCAA-GAGAT 111
|||||||| ||||| | | | | |||||||||||| ||||||| || ||| || |||||
Sbjct 1 ATGGAAGCCAAAGGAGAAACCCCGTGGAGCTCTATTTTAGTTCCTTCTGTT-AAGGAGAT 59
Query 112 GGTTAAGGAGAAGACGATCACGACCGTTCCTCCTAGGTACGTCCGGTCTGATCAAGACAA 171
||| ||||| |||| |||||||||||||||||| ||||| || |||| ||||||||||||
Sbjct 60 GGTGAAGGATAAGATGATCACGACCGTTCCTCCCAGGTATGTTCGGTATGATCAAGACAA 119
Query 172 AACTGAAGTCGAT-GATGATTTTGATGTGAAAAT-TGAGATCCCAATCATCGATATGAAG 229
| ||||||||| | ||||||| || | | | || |||||| |||||||||| ||||||
Sbjct 120 AGCTGAAGTCG-TCGATGATTCTGGTCT-CATATCCGAGATCTCAATCATCGACATGAAG 177
Query 230 CGTTTGTGTTCT-TCAACCACCATGGATTCTGAGGTT--G-AGAAACTCGACTTCGCTTG 285
|| ||||||| | || ||| || |||| ||||||||| | | |||||||||||||||||
Sbjct 178 CGGTTGTGTT-TGTCTACCGCCGTGGACTCTGAGGTTGGGAACAAACTCGACTTCGCTTG 236
Query 286 CAAAGAGTGGGGATTTTTCCAGCTTGTAAACCATGGAATAGACTCAAGTTTCTTGGACAA 345
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 237 CAAAGAATGTGGATTTTTCCAGCTTGTAAACCATGGAATAGACCCAAGTTTCTTGGACAA 296
Query 346 AGTAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAAAAGAA-GAAGTTCT 404
| ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |
Sbjct 297 AATAAAGTCAGAGATTCAAGATTTCTTCAACCTTCCCATGGAAGAGA-GAAAGAAGTTGT 355
Query 405 GGCAGCGACCAGATGAGATAGAAGG 429
|||||| | ||| | ||| |||||
Sbjct 356 GGCAGCAATCAGCGGTGATGGAAGG 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5