BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17030.1
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334969 jgi|Araly1|334969|fgenesh1_pg.C_scaffold_1001534 2468 0.0
> Ahg334969 jgi|Araly1|334969|fgenesh1_pg.C_scaffold_1001534
Length=1506
Score = 2468 bits (1336), Expect = 0.0
Identities = 1454/1511 (96%), Gaps = 7/1511 (0%)
Strand=Plus/Plus
Query 120 ATGGAGAAAAGTATCAATGGATCATGCAGACTCATCAAGAGACTCGTGATTATACTTTCT 179
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGAGAAAAGTGTCAATGGATCATGCAGACTCATCAAGAGACTTGTGATTATACTTTCT 60
Query 180 TGTCTTTCATATTCCTTTGTTCGATCAGACTTTACAGAGAGAACAAATATCAATTATGTA 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TGTCTTTCATATTCCTTTGTTCGATCAGACTTTACAGAGACAACAAATATCAATTATGTA 120
Query 240 TCAGCTGTGGGAGATCCCGGGATGAGAAACGATAACTTAAGGGTGGCTATAGAAGCTTGG 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGCTTTGGGAGATCCCGGGATGAGAAACGATAACTTAAGGGTGGCTATAGAAGCTTGG 180
Query 300 AACCAATGCAACGAGGTCGGTGAAGAAGCTACAAACATGGGAAGCCCTCGAATGGCAGAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACCAATGCAACGAGGTCGGTGAAGAAGCTACAAACATGGGAAGCCCTCGAATGGCAGAT 240
Query 360 TGCTTCGATATCGATAACTCTAGCTTTCCCGTGAAGATAATCCACAAAGTCGACGAAAGA 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TGCTTCGATATCGATAACTCTAGCTTGCCCGTGAAGATAATCCACAAAGTCGACGAAAGA 300
Query 420 GACAACAGGCTTGGGGTAGGAAATGGAACCTACGGAGGAATAAGCGCTGGAGACAACGCA 479
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 301 GACAACAGGCTTGGGGTAGGCAACGGAACCTACGGAGGAATAAGCGCTGGAGACAACGTA 360
Query 480 GATATCTACGCAGCGCAAAAGGAGGTATACTTAGGAAACAAATGTCAAGTTGTGGACAAG 539
||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 361 GATATCTACGCTGCACAAAAGGAGATATACTTAGGAAACAAATGTCAAGTTATGGACAAG 420
Query 540 CCAAATCCATGGCAGTTTTGGATGATAATGCTAAAGAACGGTAATACGGATACTTTAGCC 599
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 421 CCAAATCCATGGCAGTTTTGGATGATAATGCTGAAGAACGGTAATACGGACACTTTAGCC 480
Query 600 GCAATTTGTCCCGAAAACGGGAAAAAGGCGAAACCATTTCCTCCTACGGGGAGGTTTCCA 659
|| ||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 481 GCGATTTGTCCCGAAAACGGAAAAAAGGCGAAACCATTTCCTCAGACCGGGAGGTTTCCA 540
Query 660 TGTTTTGGGAAAGGATGTATGAACATGCCATCGATGCATCATGAGTACACAAGCTTGGTT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TGTTTTGGGAAAGGATGTATGAACATGCCATCGATGCATCATGAGTACACAAGCTTTGTT 600
Query 720 GATAACGAAGAAGGACATATGAGTGGGAGTTTTTATGGGACTTGGGACTTGGATAACGAC 779
||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 601 GAT-A--AAGAAGGACATATGAGTGGGAGTTTCTATGGGACTTGGGACTTGGATAATGAC 657
Query 780 CAAAAAGATCCGGTTGGTAATAATTCGTATTATAAGGTGAAATGGGAGAAGAAGATTGGG 839
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 CATAAAGATCCGGTTGGTAATAATTCGTATTATAAAGTGAAATGGGAGAAGAAGATTGGG 717
Query 840 GGAAATGAGAGTTGGGTTTTTCATCATTTGTTGAAGACTTCTTCTAAGTATCCATGGTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGAAATGAGAGTTGGGTTTTTCATCATTTGTTGAAGACTTCTTCTAAGTATCCATGGTTG 777
Query 900 ATGCTTTATCTACGCGCTGATGCTTCTCGAGGTTTCTCTGGTGGTTATCATTACGACACT 959
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 ATGCTTTATCTACGAGCTGATGCTTCTCGAGGTTTCTCTGGTGGTTATCATTACGGCACT 837
Query 960 AGAGGGATGATGAAGATGACGCTAAAATCGCCAG-ATTTTAAAGTAAAATTCAAGCTAGA 1018
||||||||||||||||||||||| ||||||| | |||| ||||| | ||||||||||||
Sbjct 838 AGAGGGATGATGAAGATGACGCTGGAATCGCC-GAATTTCAAAGTTAGATTCAAGCTAGA 896
Query 1019 GATTATTAAAGGAGGCGGTTCAGGGAGCCAATTTTACCTAATGGACATGGGAAGTTGCTG 1078
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GATTCTAAAAGGAGGCGGTTCAGGGAGCCAATTTTACCTAATGGACATGGGAAGTTGCTG 956
Query 1079 GAAAAACGACGGAAGAGACTGCGACGGCGACGTCACAACCGACGTTACAAGGTACAGCGA 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAAGAACGACGGAAGAGACTGCGACGGCGACGTCACAACCGACGTTACAAGGTACAGCGA 1016
Query 1139 AATGATAATCAACCCGGGGGCAACCGCCGTTTGCACCCGCAACCGCCTAGGCGCTTGTCC 1198
||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1017 AATGATAATCAACCCCGGGTCAACCGCCGTTTGCAACCGCAACCGCCTAGGCGCTTGTCC 1076
Query 1199 GCCAG-AGCATACTTTTCCAAACGGGACTAAAGTTCACAGGACGGACAAGGAGAAGTTCC 1257
||| | | || || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1077 GCC-GCAACACACGTTTCCAAACGGGACTAAAGTTCACAGGACGGACAAAGAGAAGTTCC 1135
Query 1258 CTTTCGAAGCGTATCACTATTACTGCGTTCCGGGAAACGCGCGTTTTGCGGAATCTCCGT 1317
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 CTTACGAAGCGTATCACTATTACTGCGTTCCGGGAAACGCGCGTTTTGCGGAATCCCCGT 1195
Query 1318 ACGAGGTTTGTGATCCGTACAGTAATCCACAACCGCAGGAGATTCTGCAGATCTTGCCTC 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ACGAGGTTTGTGATCCGTACAGTAATCCACAACCGCAGGAGATTCTGCAGATCTTGCCTC 1255
Query 1378 ATCCAGTGTGGGAACAGTTTGGGTATCCGACAAAGAAAGGACAAGGTTGGATTGGAGATC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATCCAGTGTGGGAACAGTTTGGGTATCCGACAAAGAAAGGACAAGGTTGGATTGGAGATC 1315
Query 1438 CAAGAACTTGGGAACTTGATGTCGGAAAACTCTCTCAGTCACTCTTCTTTTACCAGGATC 1497
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 1316 CAAGAACTTGGGAACTTGATGTCGGAAAACTCTCTCAATCACTCTACTTTTATCAGGATC 1375
Query 1498 CAGGGACGAAACCGGTGGAGAGACATTGGTCGTCGATAGATTTAGGAACTGAAATATATA 1557
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1376 CAGGGACGAAGCCGGTGGAGAGACATTGGTCGTCGATAGACTTAGGAACTGAAATATATA 1435
Query 1558 TGAGTAAGAATCAAATTGCTGAATGGACTGTAACTGATTTCGACATTGTTATACCAAATG 1617
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1436 TGAGCAAGAATCAAATTGCTGAATGGACTGTAACTGATTTCGACATTGTTATACCAAAAG 1495
Query 1618 CCGATATTTAA 1628
|||||||||||
Sbjct 1496 CCGATATTTAA 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62201370085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5