BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17040.2
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494048 jgi|Araly1|494048|fgenesh2_kg.7__3481__AT1G17040.1 2904 0.0
Ahg920610 jgi|Araly1|920610|scaffold_101891.1 1308 0.0
Ahg477018 jgi|Araly1|477018|fgenesh2_kg.2__2148__AT1G78540.1 645 0.0
> Ahg494048 jgi|Araly1|494048|fgenesh2_kg.7__3481__AT1G17040.1
Length=2337
Score = 2904 bits (1572), Expect = 0.0
Identities = 1818/1935 (94%), Gaps = 23/1935 (1%)
Strand=Plus/Plus
Query 449 AGGTTCACTCTGACATGAGTGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 508
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGGTTCACTCTGACATGAGCGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 471
Query 509 TGATGCTTTTGCCATTGACTCTCCTTCACAGGGAAGCTCCTGATCCTGTTAACACTTCTT 568
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 472 TGATGCTTTTGCCATTGACTCTCCTTCACAATGAAGCTCCTGATCCTGTTAACATTTCTT 531
Query 569 CTTGGACTGAAGTTCCTAATGTTTCTACAACGGCTAAGTTTCCTCTTCAAAAATGGGTTC 628
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 532 CTTGGACTGAAGTTCCTAATGTTTCTACAACTGCTGAGTTTCCTCTTCAAAAATGGGTTC 591
Query 629 ATGTGGGTTGTGAGGTTTCTAGAAACTATATGCGCCTTTATATTTGTGGAGAGCTTGTAG 688
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 592 ATGTGGGTTGCGAGGTTTCTAGAAACTACATGCGCCTTTATATTTGTGGAGAGATTGTAG 651
Query 689 GAGAGCAAGTCTTAACTTCCTTGATGACCAATGGTACAAATTCAGATTGCGCACGAAAGA 748
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 652 GAGAGCAAGTCTTAACTTCCTTGATGACCAATAGTACAAATTCAGATTGCGCACGAAAGA 711
Query 749 TATCGTTATTTAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACAGTGCAG 808
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 712 TATCGTTATTCAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACTGTGCTG 771
Query 809 AAGTTTTGCCTTCTAATCTCTCTGCAAGTTATCACTACACAAAGGACCCACCTTTATGGT 868
||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||||
Sbjct 772 AAGTTTTGCCTTCTAATGTCCCGGCAAATTATCACTACACAAAGGACCCACCTTTATGGT 831
Query 869 TATCTGTTGATAAGCCATCTACATCTGGAATTGAATTGGATGAAGATGGTGTTTGGAGTG 928
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |
Sbjct 832 TATCTGTTGATAAGCCATCTACATCTGGAATTGGATTAGATAAAGATGGTGTTTGGATTA 891
Query 929 TCGTTAGTGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGCCTG 988
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TCGTTAGCGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGCCTG 951
Query 989 TGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGACG-CATGTT 1047
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 952 TGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGATGCCA-GTT 1010
Query 1048 GAGAAGAGGAGTGACTTTGAGGCAT-TCCTTTTAGTAAGCTATGAAGGCA-TTGAATTAT 1105
||||||| |||||||| ||||| | |||||| |||||||||||||| | ||||||| |
Sbjct 1011 GAGAAGATGAGTGACTCGGAGGC-TCCCCTTTTGGTAAGCTATGAAGG-AGTTGAATTCT 1068
Query 1106 CTGCTGAAGATAAACCGTGCAACTTATTGAACGGATGTGCTTCTTTCAAGTTCAAATTAT 1165
||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1069 CTGCTGAAGATAAGCCATGCAACTTATTGAACGGATGTGCTTCTTTCAAGCTCAAATTAT 1128
Query 1166 CTCAGCTTTCTTCCAAGAGTGATAAGAGGTTGTTCTGCATCAAATTCGAAATACCAGAAG 1225
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1129 CTCAGCTTTCTTCCAAGAGTGATAAGAGATTGTTCTGTGTCAAATTCGAAATACCAGAAG 1188
Query 1226 TGAAGGCCAATTATCCTTTCCTCGAAACTGTCACCAACCAAATCCGTTGCATTTCGAGAA 1285
|||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1189 TGAAGGCCTATTATCCTTTCCTTGAAACTGTTACCAACCAAATCCGTTGCATTTCGAGGA 1248
Query 1286 ACCGTGATTCTGTTTCCTCTATGAAACGGATCAGATTAGGAGAAGAAAAGGTTTCTGAGA 1345
||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1249 ACCATGATTCTCTTTCCTCTATGAAACGGATCAGATTAGGGGAAGAAAAGGTTTCTGAGA 1308
Query 1346 GTAAGATTGTGAATGGAAATGGTACGAGTATGGAATGGAGGCCTCAGAACCACGAAGAAG 1405
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1309 GTGAGATTGAGAATGGAAATGGTACGAGTATGGAATGGAGACCTCAGAACCACGAAGAAG 1368
Query 1406 ATAACTCTTCAACTGATTCCGAAAACACTGAAATGAGAGACTCGACTGCTTTCAGGAGAT 1465
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1369 ATAACTCTTCAACTGATTCCGAAAACACTGAAATTAGAGACTCGACTGCTTTCAGGAGAT 1428
Query 1466 ATTCAATCCCAGACTGGATTATTTTCAAATACTGCCTTGGAAACTTAACAGAGAGAGCTC 1525
|| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 ATACAATCTCAGACTCGATTATTTTCAAATACTGCCTTGGAAACTTAACAGAGAGAGCTC 1488
Query 1526 TTCTTCTGAAGGAAATCACAAACAATTCATCAGACGAAGAAGTCTCGGAATTTGCAGATC 1585
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 1489 TTCTTCTGAAGGAAATCACAAATAATTCATCAGATGAAGAAGTCTCGGAATTTGTAGATC 1548
Query 1586 AAGTTTCTCTCTATTCCGGATGCTCCCACCACGGCTATCAAATCAAAATGGCAAGAAAAC 1645
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1549 AAGTTTCTCTCTATTCCGGATGCTTCCACCACAGCTATCAAATCAAAATGGCAAGACAAT 1608
Query 1646 TGATAGCAGAAGGAACAAATGCGTGGAATCTGATCTCTCGGAACTATCGACATGTTCATT 1705
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1609 TGATAGCAGAAGGAACAAATGCGTGGAATCTGATATCTCGGAACTATCAACATGTTCATT 1668
Query 1706 GGGACAATGTGGTAATTGAGATTGAAGAACATTTCATGAGAATAGCTAAATGCAGCAGTA 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 GGGACAATGTGGTAATTGAGATTGAAGAACATTTCATGAGAATAGCTAAATGCAGCAGTA 1728
Query 1766 GATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGGATATGTGGATGCTATGAATACA 1825
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1729 GATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGAATATGTGGATGCTATGAATACA 1788
Query 1826 TAACTCAAGAGAATTTTGAGACAATGTGGTGTTGGTTGTTCCCTGTTGCTTCGGCTGTAT 1885
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1789 TAACTCAAGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTTCGGCTATAT 1848
Query 1886 CAAGGGGGTTGATTAATGGAATGTGGCGCTCTGCTTCGCCTAAATGGATAGAAGGGTTTG 1945
| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1849 CCAGGGGATTGATTAACGGAATGTGGCGCTCAGCTTCGCCTAAATGGATAGAAGGGTTTG 1908
Query 1946 TGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATCAAGTACCGGGCACTTTCATTCTCA 2005
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1909 TGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATCAAGTAGCGGGAACTTTCATTCTCA 1968
Query 2006 GGTTCCCTACTTCAAGAAGCTGGCCACATCCTGACGCTGGTTCCGTGGTTGTGACTTATG 2065
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1969 GGTTCCCTACTTCAAGAAGCTGGCCACATCCTGATGCTGGTTCCTTGGTTGTGACTTATG 2028
Query 2066 TCGGCCATGATTTAGTTATTCATCATAGATTACTCACAATCAACCACATCTGCGATTCTA 2125
|||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2029 TCGGTCATGATTTAGTTATTCATCATAGATTACTCGCAATCGGTCACATCTGCGATTCTA 2088
Query 2126 GTGAAAGGTATACAGATGCAAAACAGTTGCAAGATATGCTTTTGGCGGAACCTGAGCTAT 2185
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2089 GTGAAAGGTATACAGATGCAAAACCGTTGCAAGATATGCTTTTGGCGGAACCTGAGCTAT 2148
Query 2186 CTCGGCTTGGAAGGATTATAAGAGGCATCTGAATCTAATCAACAGACTCAACTCAACAAA 2245
| |||||||||||| ||||| ||||||| ||||| | |||||| ||||||| || |
Sbjct 2149 CCCGGCTTGGAAGGGTTATATGAGGCATTTGAAT--A-TCAACACACTCAAC--AAGA-- 2201
Query 2246 GTAGAGAAGCATCGACTGTTATTGAGGTTTATTGTACA--GATAGATTTGCTAAGTCTAA 2303
|||| ||||||| ||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 2202 -TAGACAAGCATCAACTATTATTGAGGTTTATTATACTTTGATAGATTTGCTAAGTCTCT 2260
Query 2304 GTATTAACTGAT-A--CTAACTTTTGTAAAG----CTCAGTGATTTAAATTAGGTGGAAA 2356
|||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||
Sbjct 2261 CTATTTACTGATGATACTAACTTGTGTAAAGGAAGCTCAGTGATTTAAATTAGGTGGAAA 2320
Query 2357 GGATTTTTATTGTAA 2371
|| |||||||| |||
Sbjct 2321 GGGTTTTTATTTTAA 2335
Score = 638 bits (345), Expect = 0.0
Identities = 398/423 (94%), Gaps = 5/423 (1%)
Strand=Plus/Plus
Query 7 TATAGACTGAAACCACCGGAAGACGACGGTACGAACCGTTAATTAACAGCCGTCAAAAGA 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TATAGACTGAAACCACCGGAAGACGACGGTACCAACCGTTAATTAACAGCCGTCAAAAGA 60
Query 67 CGTGACGAAAAATTCCTCAGCGTTTCTTTTCAGTTTCCTTTAAGCTCTCGATTGTGTTTG 126
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CGTGACGAAACATTCCTCAGCGTTTCCTTTCAGTTTCCTTTAAGCTCTCGATTGTGTTTG 120
Query 127 TTTAGGTAACGAGAAAAAAGCGAGACAAACGAAAAAGGTTTTACtttttttttCTTCATC 186
|||||| |||||||||||||||||| ||| || ||||||||| | |||||||||||||
Sbjct 121 TTTAGGCAACGAGAAAAAAGCGAGAGAAA-GATAAAGGTTTT-C-ACTTTTTTCTTCATC 177
Query 187 TGTGTGTATTTTCATTTTCTGGGTTTTAAGGGTTTCGCTTGCAAAGTCGAGAGCTTTTTA 246
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTCTGTATTTTCATTTTCTGGGTTTTAAGGGTTTCGCTTGCAAAGTCGAGAGCTTTTTC 237
Query 247 TCT--GGGTGTGTTATAATGGCGGGTGATTGTGCGATTGACACCGAGAAATACTCTCTGC 304
| | ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 TTTTTGGGTGGGTTACAATGGCGGGTGATTGTGCAATTGACACCGAGAAATACTCTCTGT 297
Query 305 TGGAGGATTTTAATGTCGATGTTGAAGTCGAAAACAAAGCATTTGAGACTTTCTCACTTT 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 298 TGGAGGATTTTAATGTCGATGTTGAAGTCGAAAACAAAGCTTTTGAGACTTTCTCGCTTT 357
Query 365 GTTTTTGGGTTTATCTCTTAGATTCCACCACATACCCTTCTGCAATTATCAGACAGATTA 424
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 358 GTTTTTGGGTTTATCTCTTAGATTCCACCACATACCCTTCTACAATTATCAGACAGGTTC 417
Query 425 ACT 427
|||
Sbjct 418 ACT 420
> Ahg920610 jgi|Araly1|920610|scaffold_101891.1
Length=2639
Score = 1308 bits (708), Expect = 0.0
Identities = 811/861 (94%), Gaps = 6/861 (1%)
Strand=Plus/Plus
Query 449 AGGTTCACTCTGACATGAGTGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 508
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AGGTTCACTCTGACATGAGCGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 67
Query 509 TGATGCTTTTGCCATTGACTCTCCTTCACAGGGAAGCTCCTGATCCTGTTAACACTTCTT 568
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 68 TGATGCTTTTGCCATTGACTCTCCTTCACAATGAAGCTCCTGATCCTGTTAACATTTCTT 127
Query 569 CTTGGACTGAAGTTCCTAATGTTTCTACAACGGCTAAGTTTCCTCTTCAAAAATGGGTTC 628
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 128 CTTGGACTGAAGTTCCTAATGTTTCTACAACTGCTGAGTTTCCTCTTCAAAAATGGGTTC 187
Query 629 ATGTGGGTTGTGAGGTTTCTAGAAACTATATGCGCCTTTATATTTGTGGAGAGCTTGTAG 688
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 188 ATGTGGGTTGCGAGGTTTCTAGAAACTACATGCGCCTTTATATTTGTGGAGAGATTGTAG 247
Query 689 GAGAGCAAGTCTTAACTTCCTTGATGACCAATGGTACAAATTCAGATTGCGCACGAAAGA 748
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 248 GAGAGCAAGTCTTAACTTCCTTGATGACCAATAGTACAAATTCAGATTGCGCACGAAAGA 307
Query 749 TATCGTTATTTAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACAGTGCAG 808
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 308 TATCGTTATTCAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACTGTGCTG 367
Query 809 AAGTTTTGCCTTCTAATCTCTCTGCAAGTTATCACTACACAAAGGACCCACCTTTATGGT 868
||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||||
Sbjct 368 AAGTTTTGCCTTCTAATGTCCCGGCAAATTATCACTACACAAAGGACCCACCTTTATGGT 427
Query 869 TATCTGTTGATAAGCCATCTACATCTGGAATTGAATTGGATGAAGATGGTGTTTGGAGTG 928
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |
Sbjct 428 TATCTGTTGATAAGCCATCTACATCTGGAATTGGATTAGATAAAGATGGTGTTTGGATTA 487
Query 929 TCGTTAGTGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGCCTG 988
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TCGTTAGCGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGCCTG 547
Query 989 TGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGACGC-ATGTT 1047
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 548 TGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGATGCCA-GTT 606
Query 1048 GAGAAGAGGAGTGACTTTGAGGCATTCC-TTTTAGTAAGCTATGAAGGCA-TTGAATTAT 1105
||||||| |||||||| ||||| | || |||| |||||||||||||| | ||||||| |
Sbjct 607 GAGAAGATGAGTGACTCGGAGGC-TCCCCTTTTGGTAAGCTATGAAGG-AGTTGAATTCT 664
Query 1106 CTGCTGAAGATAAACCGTGCAACTTATTGAACGGATGTGCTTCTTTCAAGTTCAAATTAT 1165
||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 665 CTGCTGAAGATAAGCCATGCAACTTATTGAACGGATGTGCTTCTTTCAAGCTCAAATTAT 724
Query 1166 CTCAGCTTTCTTCCAAGAGTGATAAGAGGTTGTTCTGCATCAAATTCGAAATACCAGAAG 1225
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 725 CTCAGCTTTCTTCCAAGAGTGATAAGAGATTGTTCTGTGTCAAATTCGAAATACCAGAAG 784
Query 1226 TGAAGGCCAATTATCCTTTCCTCGAAACTGTCACCAACCAAATCCGTTGCATTTCGAGAA 1285
|||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 785 TGAAGGCCTATTATCCTTTCCTTGAAACTGTTACCAACCAAATCCGTTGCATTTCGAGGA 844
Query 1286 ACCGTGATTCTGTTTCCTCTA 1306
||| ||||||| || || |||
Sbjct 845 ACCATGATTCTCTTACCCCTA 865
Score = 1164 bits (630), Expect = 0.0
Identities = 714/753 (95%), Gaps = 12/753 (2%)
Strand=Plus/Plus
Query 1299 TTCCTCTATGAAACGGATCAGATTAGGAGAAGAAAAGGTTTCTGAGAGTAAGATTGTGAA 1358
||||||||||||||||||||||||||| ||||||||||||||||||||| ||| || |||
Sbjct 957 TTCCTCTATGAAACGGATCAGATTAGGGGAAGAAAAGGTTTCTGAGAGTGAGACTGAGAA 1016
Query 1359 TGGAAATGGTACGAGTATGGAATGGAGGCCTCAGAACC------------ACGAAGAAGA 1406
||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1017 TGGAAATGGTACGAGTATGGAATGGAGACCTCAGAACCATGAAGAAGAAGACGAAGAAGA 1076
Query 1407 TAACTCTTCAACTGATTCCGAAAACACTGAAATGAGAGACTCGACTGCTTTCAGGAGATA 1466
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1077 TAACTCTTCAACTGATTCCGAAAACACTGAAATTAGAGACTCGACTGCTTTCAGGAGATA 1136
Query 1467 TTCAATCCCAGACTGGATTATTTTCAAATACTGCCTTGGAAACTTAACAGAGAGAGCTCT 1526
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TACAATCTCAGACTCGATTATTTTCAAATACTGCCTTGGAAACTTAACAGAGAGAGCTCT 1196
Query 1527 TCTTCTGAAGGAAATCACAAACAATTCATCAGACGAAGAAGTCTCGGAATTTGCAGATCA 1586
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1197 TCTTCTGAAGGAAATCACAAATAATTCATCAGATGAAGAAGTCTCGGAATTTGTAGATCA 1256
Query 1587 AGTTTCTCTCTATTCCGGATGCTCCCACCACGGCTATCAAATCAAAATGGCAAGAAAACT 1646
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || |
Sbjct 1257 AGTTTCTCTCTATTCCGGATGCTTCCACCACAGCTATCAAATCAAAATGGCAAGACAATT 1316
Query 1647 GATAGCAGAAGGAACAAATGCGTGGAATCTGATCTCTCGGAACTATCGACATGTTCATTG 1706
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1317 GATAGCAGAAGGAACAAATGCGTGGAATCTGATATCTCGGAACTATCAACATGTTCATTG 1376
Query 1707 GGACAATGTGGTAATTGAGATTGAAGAACATTTCATGAGAATAGCTAAATGCAGCAGTAG 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GGACAATGTGGTAATTGAGATTGAAGAACATTTCATGAGAATAGCTAAATGCAGCAGTAG 1436
Query 1767 ATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGGATATGTGGATGCTATGAATACAT 1826
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1437 ATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGAATATGTGGATGCTATGAATACAT 1496
Query 1827 AACTCAAGAGAATTTTGAGACAATGTGGTGTTGGTTGTTCCCTGTTGCTTCGGCTGTATC 1886
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1497 AACTCAAGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTTCGGCTATATC 1556
Query 1887 AAGGGGGTTGATTAATGGAATGTGGCGCTCTGCTTCGCCTAAATGGATAGAAGGGTTTGT 1946
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1557 CAGGGGATTGATTAACGGAATGTGGCGCTCAGCTTCGCCTAAATGGATAGAAGGGTTTGT 1616
Query 1947 GACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATCAAGTACCGGGCACTTTCATTCTCAG 2006
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1617 GACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATCAAGTAGCGGGAACTTTCATTCTCAG 1676
Query 2007 GTTCCCTACTTCAAGAAGCTGGCCACATCCTGA 2039
|||||||||||||||||||||||||||||||||
Sbjct 1677 GTTCCCTACTTCAAGAAGCTGGCCACATCCTGA 1709
> Ahg477018 jgi|Araly1|477018|fgenesh2_kg.2__2148__AT1G78540.1
Length=2317
Score = 645 bits (349), Expect = 0.0
Identities = 624/757 (82%), Gaps = 18/757 (2%)
Strand=Plus/Plus
Query 1461 GAGATATTCAATCCCAGACTGGATTAT-TTTCAAATACTGCCTTGGAAACTTAA-CAGAG 1518
||||||| ||||| |||| | | || ||| | |||||||||||||||| ||| | ||
Sbjct 1428 GAGATATACAATCTCAGATTCCACCATCTTT-AGATACTGCCTTGGAAACATAATC-GAC 1485
Query 1519 AGAGCTCTTCTTCTGAAGGAAATCACAAACAATTCATCAGACGAAGAAGTCTCGGAATTT 1578
| | |||| ||||| ||||||||||||||||| ||||||||||| ||||| | |||||||
Sbjct 1486 AAATCTCTACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTT 1545
Query 1579 GCAGATCAAGTTTCTCTCTATTCCGGATGCTCCCACCACGGCTATCAAATCAAAATGGCA 1638
||| |||| |||||||| || || ||||| || ||||| ||||||||||||| ||||||
Sbjct 1546 GCAAATCAGGTTTCTCTGTACTCTGGATGTTCACACCATAGCTATCAAATCAACATGGCA 1605
Query 1639 AGAAAACTGATAGCAGAAGGAACAAATGCGTGGA-ATCTGATCTCTCGGAACTATCGACA 1697
||| | || ||||| |||||||||||||| |||| || |||| ||||||||| ||| |||
Sbjct 1606 AGAGAGCTAATAGCTGAAGGAACAAATGCCTGGATAT-TGATATCTCGGAACAATCAACA 1664
Query 1698 TGTTCATTGGGACAATGTGGTAAT-TGAGATTGAAGAACATTTCATGAGAATAGCTAAAT 1756
||||| ||||||||||||||| | |||||||||||||||||||||||| || | ||||
Sbjct 1665 TGTTCTTTGGGACAATGTGGT-CTATGAGATTGAAGAACATTTCATGAGGATTTCAAAAT 1723
Query 1757 GCAGCAGTAGATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGGATATGTGGATGCT 1816
||||||||||||| ||||| |||||||||||||| |||||||| || |||| |||||||
Sbjct 1724 GCAGCAGTAGATCACTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGCT 1783
Query 1817 ATGAATACATAACTCAAGAGAATTTTGAGACAATGTGGTGTTGGTTGTTCCCTGTTGCTT 1876
| || ||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1784 ACGAGTACGTAACTCAGGTGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTT 1843
Query 1877 -CGGCTGTATCAAGGGGGTTGATTAATGGAATGTGGCGCTCTGCTTCGCCTAAATGGATA 1935
| | |||| |||| ||||| || ||||||||||| ||| | ||||||||||||||
Sbjct 1844 ACTCCA-TATCCCGGGGATTGATAAACGGAATGTGGCGTTCTTCGTCGCCTAAATGGATT 1902
Query 1936 GAAGGGTTTGTGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATC-AAGTACCGGGCAC 1994
||||| || | ||||| |||||||| |||| ||||||||| | | ||| ||| || ||
Sbjct 1903 GAAGGATTCATCACTAAGGAAGAGGCTGAACATTCGCTTCA-AGGCCAAGAACCTGGAAC 1961
Query 1995 TTTCATTCTCAGGTTCCCTACTTCAAGAAGCTGGCCACATCCTGACGCTGGTTCCGTGGT 2054
||||| ||| | ||||||| |||||||| |||||| || ||||| |||||| ||||
Sbjct 1962 CTTCATACTCCGTTTCCCTATTTCAAGAATCTGGCCTCACCCTGATGCTGGTAGTTTGGT 2021
Query 2055 TGTGACTTATGTCGGCCATGATTTAGTTATTCATCATAGATTA-CTCACA-ATCAACCAC 2112
|||||||||||| || |||||||| | | ||||||||| | | |||| | ||| | ||
Sbjct 2022 TGTGACTTATGTTGGTCATGATTTCGCTCTTCATCATA-AGCAACTCA-AGATCGATAAC 2079
Query 2113 ATCTGCGATTCTAGTGAAAGGTATACAGATGCAAAACAGTTGCAAGATATGCTT-TTGGC 2171
|||||||| |||||||||||| | |||||||||| | ||||||||||| || |||||
Sbjct 2080 ATCTGCGAAAGTAGTGAAAGGTACATGGATGCAAAACCGCTGCAAGATATG-TTGTTGGC 2138
Query 2172 GGAACCTGAGCTATCTCGGCTTGGAAGGATTATAAGA 2208
||||| ||||| |||||||| |||||||| ||||||
Sbjct 2139 TGAACCGGAGCTCTCTCGGCTAGGAAGGATCATAAGA 2175
Score = 588 bits (318), Expect = 7e-167
Identities = 694/865 (80%), Gaps = 68/865 (8%)
Strand=Plus/Plus
Query 449 AGGTTCACTCTGACATGAGTGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 508
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 335 AGGTTCACTCAGACATGAGTGTTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGA 394
Query 509 TGATGCTTTTGCCATTGACTCTCCTTCACAGGGAAGCTCCTGATCCTGTTA-ACACTTCT 567
|||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 395 TGATGCTTTTGCCATTGACTCTCCTTCACAAGGAAGCTCCTGATCCTGT-AGACACTTCT 453
Query 568 TCTTGGACTGAAGTTCCTAATGTTTCTACAACGGCTAAGTTTCCTCTTCAAAAATGGGTT 627
|| ||||| ||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 454 TCCTGGACACAAGTTCCTAGCGTTTCTACAAAATCCAAGTTTCCTCTTCAAAAATGGGTT 513
Query 628 CATGTGGGTTGTGAGGTTTCTAGAAACTAT-ATGCGCCTTTATATTTG-TGGAGAGCTTG 685
|||||||||||||||||||||||||| | | ||| | |||| |||| | |||| | |||
Sbjct 514 CATGTGGGTTGTGAGGTTTCTAGAAATT-TCATGAGGCTTTTTATT-GATGGAAATATTG 571
Query 686 TAGGAGAGCAAGTCT-TAACTTCCTTGATGACCAATGGTACA--AATTCAGATTG-CGCA 741
||||||||| || | | ||||| ||| |||| || | ||| ||| | || || | |
Sbjct 572 AAGGAGAGCA-GTTTGTGACTTCTTTGCTGACAAA-GA-ACACCAATCCCGAGTGTC-CT 627
Query 742 CGAAAGATATCGTTATTTAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCAC 801
|||||||||||| ||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct 628 CGAAAGATATCGCTATTTAGTGTTGGCGGGGATGGTTATAGCGTTCAAGGTTTCATCCA- 686
Query 802 A-GTGCAGAAGTTTTGCCTTCTAATC-TC-TCT-GCAAGTTATCACTACACAAAGGACCC 857
| ||||| |||| || ||| ||| | || | | | | | |||| || | ||||||||
Sbjct 687 ATGTGCACAAGTCTTACCTGCTAGTGATCATGTTG-A-GC-ATCATTATATGAAGGACCC 743
Query 858 ACCTTTATGGTTATCTGTTGATAAGCCATC-TACATCTGGAATTGAATTGGATGAAGATG 916
|||| ||| ||||||||| |||| |||| | |||| || || |||| ||||| ||||
Sbjct 744 ACCTCTATTGTTATCTGTCAATAAATCATCCT-CATCGGGGATCAAATTAGATGATGATG 802
Query 917 GTGTTTGG-AGTG--TCGTT--AGTGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAA 971
|||||||| || | || || || ||| ||||| ||||||||||||||||||| ||||
Sbjct 803 GTGTTTGGCAG-GCATC-TTGCAG-GGAG-ATTTT-TTCCTTGGATGTTGTTTTATCCAA 857
Query 972 TGCTATTGGACAGCCTGTGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGA 1031
||| ||||| ||||||||||||||||||||| ||||||| || || ||||||||||| ||
Sbjct 858 TGCCATTGGCCAGCCTGTGCACAAGGATGTGGAGGTTGTTGCATCACTACTGTATGCCGA 917
Query 1032 TAGTGGGACGCATGTTGAGA--AG-AGGAGTGACTTTGAGGCATTC-CTTTTAGTAAGCT 1087
|| || ||| ||| || | |||||| |||||| | | ||||| |||||
Sbjct 918 TAC----ACT--TGTGGAGGCCAGGATGAGTGAAGCTGAGGC-TCCTCTTTTGGTAAGAG 970
Query 1088 ATGAAGGCA-TTGAATTATC-TGCTGAAGATAAACCG-TGCAACTTATTGAACGGATG-T 1143
||||||| | ||||||| || | ||| |||| |||| | ||| ||||| |||||| | |
Sbjct 971 ATGAAGG-AGTTGAATTCTCAT-CTGGTGATAGACCGAT-CAAATTATTAAACGGACGCT 1027
Query 1144 GCTTC-TTTCAAGTTCAA-ATTATCTCAGCTTTCTTCCAAGAGTGATAAGAGGTTGTTCT 1201
| || ||| ||| |||| || ||||||||||| |||||||||||||| || |||||||
Sbjct 1028 -CATCCTTT-AAGCTCAAGATC-TCTCAGCTTTCCTCCAAGAGTGATAACAGATTGTTCT 1084
Query 1202 GCATCAAATTCGAAATACCAGAA-G-TGAAGGCCAATTATCCTTTCCT-CGAAACTGTCA 1258
| || ||||| | ||||| | || | | ||| | ||||||||| || | || ||||
Sbjct 1085 GGATTAAATTTGGAATACGA-AATGCTAAAG---A-TTATCCTTTTCTTC-AAGCTGTTT 1138
Query 1259 CCAA-CCAAATCCGTTGCATTTCGA 1282
|||| |||| |||||||||||||||
Sbjct 1139 CCAATCCAA-TCCGTTGCATTTCGA 1162
Score = 73.1 bits (39), Expect = 9e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1396 CACGAAGAAGATAACTCTTCAACTGATTCCGAAAACACTGAAATGAGA 1443
||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1384 CACGAAGAAGATAACTCTTCAACTGATTCAGAAAACTCGGAAATGAGA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90197700160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5