BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G17090.1

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920616 jgi|Araly1|920616|scaffold_101897.1                        246    1e-64


> Ahg920616 jgi|Araly1|920616|scaffold_101897.1
Length=274

 Score =  246 bits (133),  Expect = 1e-64
 Identities = 149/157 (95%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  162  GTGATCTTCTGCATCTCCTTGTTTGCAATCAATTTAGTGTTTTCTTGTTTCACTTGCTTC  221
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct  39   GTGATCTTCTGCATCTCCTTGTTTGCAATCAATTTAGTGTTTTGTTGTTTCACCTGCTTC  98

Query  222  TCCATTCTTCAGAGCTCCATGAAAGATGAAAACCAGGATTTCAGTGATCTCAGGAAGAAT  281
            || |||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  99   TCTATTCTTCAGATCTTCATGAAAGATGAAAACCAGGATTTCAGTGATCTCAGGAAGAAT  158

Query  282  CTTATTGAACCAGAGGAAGCTAAACCAGATGAGAAGG  318
            ||| |||||||||| ||||||||||| ||||||||||
Sbjct  159  CTTGTTGAACCAGAAGAAGCTAAACCGGATGAGAAGG  195


 Score = 71.3 bits (38),  Expect = 8e-12
 Identities = 38/38 (100%), Gaps = 0/38 (0%)
 Strand=Plus/Plus

Query  99   TTGTAAACCAACAACCATCATGCTCAGTTTCCAAGAAG  136
            ||||||||||||||||||||||||||||||||||||||
Sbjct  2    TTGTAAACCAACAACCATCATGCTCAGTTTCCAAGAAG  39



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24474912714


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5