BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17100.1
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471908 jgi|Araly1|471908|fgenesh2_kg.1__1862__AT1G17100.1 1279 0.0
> Ahg471908 jgi|Araly1|471908|fgenesh2_kg.1__1862__AT1G17100.1
Length=918
Score = 1279 bits (692), Expect = 0.0
Identities = 856/930 (92%), Gaps = 31/930 (3%)
Strand=Plus/Plus
Query 1 ACCACACATTCACACGTAACAAATAATCTATATTACCGGTAAAAGGCCGCGTAAAC-A-- 57
|||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 1 ACCACACATTCAGACGTAA-GAATAATCTATATTACCAGTAAAAGGCCGCGTAAACAACG 59
Query 58 AAGAAAGAAGT--AA-G---C--TACCTAGATAAAACCGCCATGGCCACCGGTTTAGGCT 109
|||| |||||| || | | ||| |||| ||||||||||||||||| |||||| |||
Sbjct 60 AAGACAGAAGTAAAAGGCACCTATACTTAGAAAAAACCGCCATGGCCACAGGTTTAAGCT 119
Query 110 TCTTTAAGCTCTCCTTCCTCCTTAGCCTCCTCTCCGGTGGATCAGACCTATTAGGTCCCG 169
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 120 TCTTTAAGCTCTCTTTCCTCCTCAGCCTCCTCTCCGGCGGATCAGACCTATTAGGTCCCG 179
Query 170 ATGCCGAATCCGGAGTCGCCCAAATTGGGAAGTTCCCGCCGTCGTGTAACAGAATCGAAT 229
| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 180 AAGCCGAATCCGGAGTCGCCCAAATCGGGAAGTTCCCGCCGTCGTGTAACCGAATCGAAT 239
Query 230 GCCCGAGCTACGAGCTGGTTCACTCCGGAAATGGATACGAAATTCGCCGGTACAACAACA 289
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 240 GCCCGAGCTACGAGCTGGTTCACTCTGGAAATGGATACGAAATTCGCCGGTACAACAGCA 299
Query 290 CCGTCTGGGTTTCCACTGAACCGATTCCAGATATCTCTCTCGTTGATGCTACCAGAACCG 349
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 300 CCGTCTGGGTTTCCACTGAACCGATTCCAGATATCTCGCTCGTTGATGCTACAAGAACCG 359
Query 350 CTTTCTTCCAATTGTTTGCATACATTCAGGGGAAGAACGAGTATCATCAGAAGATAGAAA 409
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTTTTTCCAATTGTTTGCATACATTCAGGGGAAGAACGAGTATCATCAGAAGATAGAAA 419
Query 410 TGACTGCTCCGGTTATCTCTCAAGTCTCACCAAGCGACGGTCCATTCTGTGAATCTTCCT 469
||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct 420 TGACTGCTCCGGTCATCTCTCAGGTCTCTCCAAGCGATGGTCCCTTCTGTGAATCTTCCT 479
Query 470 TCACTGTATCATTCTACGTTCCTAAAAAGAACCAGCCTGATCCAGCTCCGTCGGAGAATC 529
|||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 480 TCACTGTATCCTTCTACGTTCCCAAAAAGAACCAGCCTGATCCAGCTCCGGCGGAAAATC 539
Query 530 TCCACATTCAGAAATGGAACTCTAGGTACGTGGCCGTGAGACAATTCAGTGGATTCGTGT 589
||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 540 TCCACATCCAGAAATGGAACCCTAGGTACGTGGCCGTGAGACAATTCAGCGGATTCGTCT 599
Query 590 CTGATGATAGCATAGGAGAACAAGCGGCGGCGCTAGACTCGAGCCTCAAAGGTACGGCTT 649
| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 600 CCGATGATAGCATTGGAGAAGAAGCGGCGGCGCTAGACTCGACCCTCAAAGGTACGCCTT 659
Query 650 GGGCTAATGCAATAGCGAAAAGCAAAGAAGACGGTGGTGTTGGGTCGGATTCAGCTTACA 709
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGCTAATGCAATAGAGAAAAGCAAAGAAGACGGTGGTGTTGGGTCGGATTCAGCTTACA 719
Query 710 CGGTCGCTCAGTATAACTCACCCTTCGAGTTCTCCGGTCGGGTCAATGAGATTTGGTTAC 769
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGGTGGCTCAGTATAACTCACCCTTCGAGTTCTCCGGTCGGGTCAATGAGATTTGGTTAC 779
Query 770 CGTTCGAGCTCGATGTTTAAGCTCTGCTTAGTGAACCCTTTTTCTATACATTTGAATAAA 829
||||||||||||||||||| | | | | | |||||||| |||||| |||||||||
Sbjct 780 CGTTCGAGCTCGATGTTTA-G-T--G---A---A-CCCTTTTTATATACACTTGAATAAA 828
Query 830 ATAA-GAGGTTAATCTGTAAAGTGCAAACCTTTTTTCTGATACAAATTT-TGCAGAAACA 887
| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 829 ACAAAGAGGTTAATCTGTAAAGTGCAAACCTTTTTTCCGATACAAATTTATGCAGAAACA 888
Query 888 GGGGA---A-TTT--GATGAAATGAGATTG 911
||||| | ||| |||||||||||||||
Sbjct 889 GGGGAGGGAATTTTTGATGAAATGAGATTG 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33776904462
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5