BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17120.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471910 jgi|Araly1|471910|fgenesh2_kg.1__1864__AT1G17120.1 2970 0.0
> Ahg471910 jgi|Araly1|471910|fgenesh2_kg.1__1864__AT1G17120.1
Length=1925
Score = 2970 bits (1608), Expect = 0.0
Identities = 1776/1858 (96%), Gaps = 7/1858 (0%)
Strand=Plus/Plus
Query 18 CCTGCTTCAATGGAGGAAGCTCACCAGCTGGAGTCGAGATCCGATGACCTAAGTCAACGG 77
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CCTGCTTCAATGGAGGAAGCTCACCAGCAGGAGTCGAGATCCGATGACCTAAGTCAACGG 60
Query 78 AGAAGCTACTGGAGATGGAGGAAGCAGGATTTTTTCCCGGAATTCTCTTTTCAGAGCTTC 137
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGAGCTACTGGAGATGGAGGAAGCAGGATTTTTTCCCGGAATTCTCTTTTCAGAGCTTC 120
Query 138 TCTACCTACAAATCAGCTCTCTCCGCCACTTGTCCACGCCTCGCCGATCGTCTTCTCTCT 197
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 121 TCTACCTACAAATCAGCTCTCTCCGCCACTTGTCCTCGCCTCGCAGATCGTCTTCTCTCG 180
Query 198 CGCTCTTCCGATGCGTACGAGCTCGATGCAGCCCGCCGCGAAAGCGAGAACCCTATGCGT 257
|| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CGTTCTTCCGACGCTTACGAGCTCGATGCAGCACGCCGCGAAAGCGAGAACCCTATGCGT 240
Query 258 CGTTGTCTCACTTGGTGGGACTTGCTCTGGCTTAGCTTTGGTTCTGTTGTTGGTTCGGGT 317
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 241 CGTTGTCTCACGTGGTGGGACTTGCTCTGGCTTAGCTTTGGCTCTGTTGTTGGGTCTGGT 300
Query 318 GTGTTCGTGATCACGGGTCAGGAGGCTCGAGTTGGAGCTGGTCCTGCTGTTGTTCTCTCC 377
|||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 301 GTGTTCGTGATCACGGGTCAGGAGGCTCGAACTGGAGCCGGTCCTGCCGTTGTTCTCTCT 360
Query 378 TACGCTATCTCTGGTGTCTCTGCATTGCTCTCAGTTCTCTGTTATGCTGAGTTTGGAGTT 437
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 TACGCTATCTCTGGTGTCTCTGCTTTGCTCTCAGTTCTCTGTTATGCTGAGTTTGGAGTT 420
Query 438 GAGATTCCTGTCGCTGGAGGTTCTTTCTCTTATCTTAGGGTTGAATTGGGGGATTTTATT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGATTCCTGTCGCTGGAGGTTCTTTCTCTTATCTTAGGGTTGAATTGGGGGATTTTATT 480
Query 498 GCCTTTATTGCTGCTGGGAATATTCTTCTTGAGGCTATGGTTGGTGCTGCTGGATTAGGG 557
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GCCTTTATTGCTGCTGGGAATATTCTGCTTGAGGCTATGGTTGGTGCTGCTGGATTAGGG 540
Query 558 AGGTCATGGTCTTCGTATCTAGCTAGTTTGGTCAAGAATGATTCTGATTATTTTCGGATT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGTCATGGTCTTCGTATCTAGCTAGTTTGGTCAAGAATGATTCTGATTATTTTCGGATT 600
Query 618 AAAGTCGATTCCTTTGCTAAAGGGTTTGATCTTTTGGATCCGGTTGCTGTTGCAGTGCTT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAGTCGATTCCTTTGCTAAAGGGTTTGATCTTTTGGATCCGGTTGCTGTTGCAGTGCTT 660
Query 678 TTAGTTGCTAATGGTATTGCCATGACTGGAACAAAGAGGACTTCTTGGTTGAATTTGATT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTAGTTGCTAATGGTATTGCCATGACTGGAACAAAGAGGACTTCTTGGTTGAATTTGATT 720
Query 738 ACTTCCATGGTCACTGTTTGTATTATTGTGTTTATCGTCGTTGTGGGGTTTACTCATTCA 797
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTTCCATGGTCACGGTTTGTATTATTGTGTTTATCGTCGTTGTGGGGTTTACTCATTCA 780
Query 798 AAAACCTCAAATTTGGTTCCTTTTTTCCCTTATGGAGCGAAAGGTGTGGTGCAATCTGCT 857
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAACCTCCAATTTGGTTCCTTTTTTCCCTTATGGAGCGAAAGGTGTGGTGCAATCTGCT 840
Query 858 GCAGTTGTCTACTGGTCATACACTGGTTTTGATATGGTGGCTAACATGGCTGAAGAAACC 917
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GCAGTTGTCTACTGGTCATACACTGGGTTTGATATGGTGGCTAACATGGCTGAAGAAACC 900
Query 918 GAGAAACCTTCCAGAGATATTCCAATTGGTTTGGTTGGTTCGATGTCTATGATCACTGTG 977
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 901 GAGAAACCTTCGAGAGATATACCAATTGGTTTGGTTGGTTCGATGTCTATGATCACCGTG 960
Query 978 GTTTACTGTTTGATGGCTCTGGCCTTGACTATGATGGTGAAATACACTGAAATTGATGCG 1037
|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 961 GTTTACTGTTTGATGGCTTTGGCGTTGACTATGATGGTAAAATACACTGAAATTGATGCG 1020
Query 1038 AATGCAGCTTATTCTGTTGCTTTTGCTCAGATTGGGATGAAATGGGCGAAGTACTTGGTT 1097
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 1021 AATGCAGCTTATTCTGTTGCTTTTACACAGATTGGGATGAAATGGGCTAAGTACTTGGTT 1080
Query 1098 GGTATATGCGCTTTAAAGGGAATGACCACAAGCCTGCTTGTTGGCTCTCTAGGCCAAGCT 1157
|||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct 1081 GGTATATGCGCTTTAAAGGGCATGACCACAAGCCTGCTTGTTGGATCTCTTGGTCAAGCT 1140
Query 1158 CGGTACACCACTCAGATTGCTCGGTCTCATATGATTCCTCCATGGTTTGCTTTGGTTCAT 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CGGTACACCACTCAGATTGCTCGGTCTCATATGATTCCTCCATGGTTTGCTTTGGTTCAT 1200
Query 1218 CCAAAAACAGGAACCCCTATTTATGCTACTCTCCTTGTAACCATACTCAGTTCAATAATA 1277
|| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1201 CCCAAAACAGGAACCCCTATTAATGCTACTCTCCTTGTAACCATACTCAGCGCAATAATC 1260
Query 1278 TCCTTCTTCACCAGCTTAGAGGTTTTATCAAGCGTTTTCTCCTTTGCTACCCTCTTCATT 1337
||||| |||||||||||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 1261 TCCTTTTTCACCAGCTTAGATGTTCTATCAAGCGTTTTCTCCTTCGCCACCCTCTTCATT 1320
Query 1338 TTCATGCTCGTGGCAGTAGCATTGCTTGTGAGACGTTACTACGTGAAGGATGTCACTCCT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 TTCATGCTCGTGGCAGTAGCATTGCTTGTGAGACGTTACTACGTGAAGGATGTGACTCCT 1380
Query 1398 GAGGCCGGTTTGTTGAAGTTTCTTGGTTTTCTGTTTTTGATAATTGCTTCCTCCATTGGA 1457
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1381 GAGACCGGTTTGTTGAAGTTTCTTGGTTTTCTGTTTTTGATCATTGCTTCTTCCATTGGA 1440
Query 1458 GTATCAGCGCTT-TGGAACT-CAGGCGTTAAAGGTTGGATCGCTTACACAGTGACTGGAG 1515
||||||||| || ||||| | |||||||| ||| ||||||||||| ||||||| ||||
Sbjct 1441 GTATCAGCG-TTATGGAA-TGCAGGCGTTGGAGGATGGATCGCTTATGCAGTGACCGGAG 1498
Query 1516 TTATT-TGGTTTATAGGCACTTTAGGGTTGGCATTGCTTCCGAAATATCGTGTTCCTAAG 1574
|| || ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 1499 TT-TTATGGTTGATAGGCACTTTAGGATTGGCATTGCTTCCGAAATACCGTGTCCCTAAG 1557
Query 1575 GTATGGGGAGTCCCACTAGTTCCGTGGTTGCCATCGTTTTCAATCGCCATGAATCTATTC 1634
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1558 GTTTGGGGAGTCCCGCTAGTTCCGTGGTTGCCATCGTTTTCAATCGCCATGAATCTTTTC 1617
Query 1635 CTTATCGGATCACTCGGTTATGTAGCATTCTTGAGATTCATTATCTGCACCATGGTGATG 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CTTATCGGATCACTCGGTTATGTAGCATTCTTGAGATTCATTATCTGCACCATGGTGATG 1677
Query 1695 CTTTTGTACTACCTATTCGTTGGTCTTCATGCAACCTATGATGTAGCTCATCAGCCTTTG 1754
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1678 CTTTTGTACTACCTATTCGTTGGTCTTCATGCAACCTATGATGTAGCTCATCAGCCACTG 1737
Query 1755 GAGGAAGCAAAGTTTGAGGGAGAGAGATAAA-AGAATCGATCGTAACACTTCACTACGTT 1813
|||||| ||||||| |||||||||||||||| ||||||||||| ||||||| |||||| |
Sbjct 1738 GAGGAATCAAAGTTCGAGGGAGAGAGATAAAGAGAATCGATCGCAACACTTGACTACGGT 1797
Query 1814 TGGTAAATTGTATAAATTCCCTTGTTTTCTGATGTGATTTCAATATTCTTCTATTAAA 1871
||||||||||||||||||||| |||||||| |||| |||||| ||||||| |||||||
Sbjct 1798 TGGTAAATTGTATAAATTCCCATGTTTTCTTATGTAATTTCACTATTCTTGTATTAAA 1855
Score = 75.0 bits (40), Expect = 2e-12
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1897 TTTTCGTGTTTTCTCATTCTTTTCATTTTTCAATGTTGAA 1936
||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TTTTCGTGTTTTCTCATTCTTTTCATTTTTCAATGTTGAA 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5