BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17130.2
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471912 jgi|Araly1|471912|fgenesh2_kg.1__1866__AT1G17130.2 1978 0.0
> Ahg471912 jgi|Araly1|471912|fgenesh2_kg.1__1866__AT1G17130.2
Length=1316
Score = 1978 bits (1071), Expect = 0.0
Identities = 1251/1334 (94%), Gaps = 28/1334 (2%)
Strand=Plus/Plus
Query 19 TAAAATCCAAAGCG-TAAAATCA-T---AG-CGAGAAATTTCCTTATTCCTGTGATTTTG 72
||||| |||||||| |||||||| | || ||||||||||||| ||||||||||||||
Sbjct 1 TAAAAACCAAAGCGTTAAAATCATTACGAGAAGAGAAATTTCCTTTTTCCTGTGATTTTG 60
Query 73 CTGAGAAGAAGAAGAATCTCGAGGAGGAAGAAGAAACAGGCGACATGGGAGAACGGAAGG 132
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CT---CAGAAGAAG---CTCGAGGAGGAAGAAGAAACAGGCGACATGGGAGAACGGAAGG 114
Query 133 TGCTAAACAAGTATTATCCGCCGGACTTCGATCCTGCGAAGCTTCAACGGCTCCGGCGGC 192
|||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
Sbjct 115 TGCTTAACAAGTATTATCCACCGGACTTCGATCCTTCGAAGCTTCAGCGGCTCCGGCGAC 174
Query 193 CGAAGAACCAGCAGATCAAGGTTCGTATGATGCTTCCAATGAGTGTCCGATGCGGTACCT 252
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 175 CGAAGAACCAGCAGATCAAGGTTCGTATGATGCTTCCGATGAGTGTCCGATGCAGTACCT 234
Query 253 GCGGAAACTATATCTACAAGGGAACCAAGTTCAATTCCCGTAAAGAAGACGTCATTGGCG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GCGGAAACTATATCTACAAGGGAACCAAGTTCAATTCCCGTAAAGAAGACGTCATTGGCG 294
Query 313 AGAACTTTTCTTTTGATGTGCAGACGTATCTCGGGATTCAAATATTTAGATTCTACTTCA 372
|||||| |||| | ||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 295 AGAACTATTCTATCGATTTGCAGACGTATCTCGGGATTCAAATATTCAGATTCTACTTCA 354
Query 373 AGTGCACCAAGTGCTCTGCAGAGCTGACTATGAAGACGGATCCACAAAATTCTGATTACA 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGTGCACCAAGTGCTCTGCAGAGCTGACTATGAAGACGGATCCACAAAATTCTGATTACA 414
Query 433 TTGTCGAATCTGGGGCATCTCGAAATTATGAACCCTGGCGTGCAGAAGATGAGGAGGTTG 492
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 415 TTGTCGAATCTGGGGCATCTCGTAATTATGAACCCTGGCGTGCAGAAGATGAGGAGGTTG 474
Query 493 ATAAGGATAAACAGAAAAGAGATGCTGAGGAGATGGGGGACGCGATGAAGTCCTTGGAGA 552
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 475 ATAAAGATAAACAGAAAAGAGATGCTGAGGAGATGGGGGATGCGATGAAGTCCTTGGAGA 534
Query 553 ACAGAACTTTGGATTCTAAAAGAGAAATGGACATTATAGCTGCACTTGATGAAATGAAAT 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ACAGAACTTTGGATTCTAAAAGAGAAATGGACATTATAGCTGCACTTGATGAAATGAAAT 594
Query 613 CAATGAAGTCTAGACATGCTACTGTGAGTGTAGATGCAATGTTGGAGGCCTTGCAAAGAA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CAATGAAGTCTAGACATGCTACTGTGAGTGTAGATGCAATGTTGGAGGCCTTGCAAAGAA 654
Query 673 CAGGCGCTGAGAAGGTAAAACGAATAGAAGAAGAAGATGAAGCAGTTATAAAGTCGATAT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CAGGCGCTGAGAAGGTAAAACGAATAGAAGAAGAAGATGAAGCAGTTATAAAGTCGATAT 714
Query 733 TTGGTAAACAGAAAGAAGTTATTAGGAGAATTGCAGATGAAGAAATtgatgatgattatg 792
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 715 TTGGTAAACAGAAAGAAGTTATTAGGAGAATTGCAGATGAAGAAATTGATGATGAT---G 771
Query 793 atgatgatgatatcgatgatTATCCCAGCCTTCAGAAGGAGAAGAAAGGATCATCGTCAG 852
|| | |||||| ||| |||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 772 AT--T-ATGATAGCGACGATTCTCCCAACCTTCAGAAGGAGAAGAAAGGATCATCTTCAG 828
Query 853 ATCTTTCAAAGAAGAGGAAGGCAACAGAAGTAAGTCCAAGCAACCCCACAGATATTTTGA 912
|||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 829 ATCTTTCAAAGAAGAGAAAGGCATCAGAAGAAAGTCCAAGCAACCCCACAGATATTTTGA 888
Query 913 CTAGTTCTTCTGCAGAAAATCCGAAGGAGCCCAAGAAACAAGCTATCAGCAAACAACCCT 972
||||||||||| | |||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 889 CTAGTTCTTCTACGGAAAATCCAAAGGAGCCCAAGAAACGAGCTACCAGCAAACAACCCT 948
Query 973 TTAAATCCGTTCACATAAAAGTCATCAAGAAGCAACCTCAACCAACTTCATCGTCAACTC 1032
| |||||||||||||||| |||||||||||||||| ||||||| ||||| ||| | ||||
Sbjct 949 TCAAATCCGTTCACATAACAGTCATCAAGAAGCAATCTCAACCTACTTCTTCGACGACTC 1008
Query 1033 CGGCTCCTGCAAAACCAGAGGAGAAGAAGAGTGATGGTGCGGCTAACACCAGTTTAGCCT 1092
| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
Sbjct 1009 CAGCTCCTGCAAAACCAGAGGAGAAGAAGGGTGGCGATGCGGCTAACACCAGTTTAGCAT 1068
Query 1093 CTTTATTCCAGAATTATGGTAGTGATGAAGATGAAGATTGATTGTTTTTGTTCTCGACAA 1152
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1069 CTTTATTCCAGAATTATGGTAGTGATGAAGACGAAGAGTGATTGTTTTTGTTCTCAACAA 1128
Query 1153 GTTCCGCACTTTCACAGATCTCATATCACTGTTTTAGAATTCGAGC--TCTTA-TACTG- 1208
|||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 1129 GTTCCGCACTTTCACAGATCTCATATCACTGTTTTAGAATTCTAGCCATCTTTGTACTGC 1188
Query 1209 TCGATATATGTGAGATCTTTCAGAATTTTCAGAAATTTGTTCATGAAATTGTTTTTGCAA 1268
|| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1189 TC-ATATACGTGACATCTTTCAGAATTTTCAAAAATTTGTTCATGAAATTGTTTTTGCAG 1247
Query 1269 TTGATTTGGATTGATAGTTAGCTTCTGATGAAGCGGACCCACTTACAAAAACTTCCAGGT 1328
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1248 TTGATTTGGATTGATAGTTAGCTTCTGATGAAGCGGA-----TTACAAAAACCTCCAGGT 1302
Query 1329 AAATACAGCAAAAT 1342
||||||||||||||
Sbjct 1303 AAATACAGCAAAAT 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5