BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17130.2 Length=1358 Score E Sequences producing significant alignments: (Bits) Value Ahg471912 jgi|Araly1|471912|fgenesh2_kg.1__1866__AT1G17130.2 1978 0.0 > Ahg471912 jgi|Araly1|471912|fgenesh2_kg.1__1866__AT1G17130.2 Length=1316 Score = 1978 bits (1071), Expect = 0.0 Identities = 1251/1334 (94%), Gaps = 28/1334 (2%) Strand=Plus/Plus Query 19 TAAAATCCAAAGCG-TAAAATCA-T---AG-CGAGAAATTTCCTTATTCCTGTGATTTTG 72 ||||| |||||||| |||||||| | || ||||||||||||| |||||||||||||| Sbjct 1 TAAAAACCAAAGCGTTAAAATCATTACGAGAAGAGAAATTTCCTTTTTCCTGTGATTTTG 60 Query 73 CTGAGAAGAAGAAGAATCTCGAGGAGGAAGAAGAAACAGGCGACATGGGAGAACGGAAGG 132 || |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CT---CAGAAGAAG---CTCGAGGAGGAAGAAGAAACAGGCGACATGGGAGAACGGAAGG 114 Query 133 TGCTAAACAAGTATTATCCGCCGGACTTCGATCCTGCGAAGCTTCAACGGCTCCGGCGGC 192 |||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||| | Sbjct 115 TGCTTAACAAGTATTATCCACCGGACTTCGATCCTTCGAAGCTTCAGCGGCTCCGGCGAC 174 Query 193 CGAAGAACCAGCAGATCAAGGTTCGTATGATGCTTCCAATGAGTGTCCGATGCGGTACCT 252 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 175 CGAAGAACCAGCAGATCAAGGTTCGTATGATGCTTCCGATGAGTGTCCGATGCAGTACCT 234 Query 253 GCGGAAACTATATCTACAAGGGAACCAAGTTCAATTCCCGTAAAGAAGACGTCATTGGCG 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 235 GCGGAAACTATATCTACAAGGGAACCAAGTTCAATTCCCGTAAAGAAGACGTCATTGGCG 294 Query 313 AGAACTTTTCTTTTGATGTGCAGACGTATCTCGGGATTCAAATATTTAGATTCTACTTCA 372 |||||| |||| | ||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 295 AGAACTATTCTATCGATTTGCAGACGTATCTCGGGATTCAAATATTCAGATTCTACTTCA 354 Query 373 AGTGCACCAAGTGCTCTGCAGAGCTGACTATGAAGACGGATCCACAAAATTCTGATTACA 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 AGTGCACCAAGTGCTCTGCAGAGCTGACTATGAAGACGGATCCACAAAATTCTGATTACA 414 Query 433 TTGTCGAATCTGGGGCATCTCGAAATTATGAACCCTGGCGTGCAGAAGATGAGGAGGTTG 492 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 415 TTGTCGAATCTGGGGCATCTCGTAATTATGAACCCTGGCGTGCAGAAGATGAGGAGGTTG 474 Query 493 ATAAGGATAAACAGAAAAGAGATGCTGAGGAGATGGGGGACGCGATGAAGTCCTTGGAGA 552 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 475 ATAAAGATAAACAGAAAAGAGATGCTGAGGAGATGGGGGATGCGATGAAGTCCTTGGAGA 534 Query 553 ACAGAACTTTGGATTCTAAAAGAGAAATGGACATTATAGCTGCACTTGATGAAATGAAAT 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 ACAGAACTTTGGATTCTAAAAGAGAAATGGACATTATAGCTGCACTTGATGAAATGAAAT 594 Query 613 CAATGAAGTCTAGACATGCTACTGTGAGTGTAGATGCAATGTTGGAGGCCTTGCAAAGAA 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 CAATGAAGTCTAGACATGCTACTGTGAGTGTAGATGCAATGTTGGAGGCCTTGCAAAGAA 654 Query 673 CAGGCGCTGAGAAGGTAAAACGAATAGAAGAAGAAGATGAAGCAGTTATAAAGTCGATAT 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 CAGGCGCTGAGAAGGTAAAACGAATAGAAGAAGAAGATGAAGCAGTTATAAAGTCGATAT 714 Query 733 TTGGTAAACAGAAAGAAGTTATTAGGAGAATTGCAGATGAAGAAATtgatgatgattatg 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 715 TTGGTAAACAGAAAGAAGTTATTAGGAGAATTGCAGATGAAGAAATTGATGATGAT---G 771 Query 793 atgatgatgatatcgatgatTATCCCAGCCTTCAGAAGGAGAAGAAAGGATCATCGTCAG 852 || | |||||| ||| |||| ||||| ||||||||||||||||||||||||||| |||| Sbjct 772 AT--T-ATGATAGCGACGATTCTCCCAACCTTCAGAAGGAGAAGAAAGGATCATCTTCAG 828 Query 853 ATCTTTCAAAGAAGAGGAAGGCAACAGAAGTAAGTCCAAGCAACCCCACAGATATTTTGA 912 |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| Sbjct 829 ATCTTTCAAAGAAGAGAAAGGCATCAGAAGAAAGTCCAAGCAACCCCACAGATATTTTGA 888 Query 913 CTAGTTCTTCTGCAGAAAATCCGAAGGAGCCCAAGAAACAAGCTATCAGCAAACAACCCT 972 ||||||||||| | |||||||| |||||||||||||||| ||||| |||||||||||||| Sbjct 889 CTAGTTCTTCTACGGAAAATCCAAAGGAGCCCAAGAAACGAGCTACCAGCAAACAACCCT 948 Query 973 TTAAATCCGTTCACATAAAAGTCATCAAGAAGCAACCTCAACCAACTTCATCGTCAACTC 1032 | |||||||||||||||| |||||||||||||||| ||||||| ||||| ||| | |||| Sbjct 949 TCAAATCCGTTCACATAACAGTCATCAAGAAGCAATCTCAACCTACTTCTTCGACGACTC 1008 Query 1033 CGGCTCCTGCAAAACCAGAGGAGAAGAAGAGTGATGGTGCGGCTAACACCAGTTTAGCCT 1092 | ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| | Sbjct 1009 CAGCTCCTGCAAAACCAGAGGAGAAGAAGGGTGGCGATGCGGCTAACACCAGTTTAGCAT 1068 Query 1093 CTTTATTCCAGAATTATGGTAGTGATGAAGATGAAGATTGATTGTTTTTGTTCTCGACAA 1152 ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| Sbjct 1069 CTTTATTCCAGAATTATGGTAGTGATGAAGACGAAGAGTGATTGTTTTTGTTCTCAACAA 1128 Query 1153 GTTCCGCACTTTCACAGATCTCATATCACTGTTTTAGAATTCGAGC--TCTTA-TACTG- 1208 |||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| Sbjct 1129 GTTCCGCACTTTCACAGATCTCATATCACTGTTTTAGAATTCTAGCCATCTTTGTACTGC 1188 Query 1209 TCGATATATGTGAGATCTTTCAGAATTTTCAGAAATTTGTTCATGAAATTGTTTTTGCAA 1268 || ||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1189 TC-ATATACGTGACATCTTTCAGAATTTTCAAAAATTTGTTCATGAAATTGTTTTTGCAG 1247 Query 1269 TTGATTTGGATTGATAGTTAGCTTCTGATGAAGCGGACCCACTTACAAAAACTTCCAGGT 1328 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 1248 TTGATTTGGATTGATAGTTAGCTTCTGATGAAGCGGA-----TTACAAAAACCTCCAGGT 1302 Query 1329 AAATACAGCAAAAT 1342 |||||||||||||| Sbjct 1303 AAATACAGCAAAAT 1316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50817848361 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5