BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17145.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471915 jgi|Araly1|471915|fgenesh2_kg.1__1869__AT1G17145.1 2008 0.0
Ahg927252 jgi|Araly1|927252|scaffold_202813.1 398 7e-110
> Ahg471915 jgi|Araly1|471915|fgenesh2_kg.1__1869__AT1G17145.1
Length=1375
Score = 2008 bits (1087), Expect = 0.0
Identities = 1297/1394 (93%), Gaps = 31/1394 (2%)
Strand=Plus/Plus
Query 1 TTCGTATCCGACTAACTCCACCGTTTCGTTCTTCGTTCTTCATCGGATCTTTCTTCT--T 58
||||||||| || |||||||||||||| | ||| |||||| ||||||||||| ||
Sbjct 1 TTCGTATCCAACCAACTCCACCGTTTC--T-TTC-TTCTTCGTCGGATCTTTC-GCTAAA 55
Query 59 CACGACGACAACATTACTGTATATCTCTTTCGCAAAGGAAAAGTTCTGATCTTTGTATTC 118
||| || ||||||||||||||| ||||| || || |||||||||| | |||||||| |||
Sbjct 56 CAC-ACAACAACATTACTGTATCTCTCTCTCACAGAGGAAAAGTTGTCATCTTTGTCTTC 114
Query 119 TCTTATCATTCGTTATCTAAGTCT-CTTCGATTC---TCGAAGCTTTTAAGGCA-TTTAA 173
||||| | |||||||||||||| | ||||||||| || || | || || | |||||
Sbjct 115 TCTTACCGTTCGTTATCTAAGT-TGCTTCGATTCTTATC-AA-CGGTT--GGAATTTTAA 169
Query 174 AGAGACGAAATGGGTAATAAGCTGGGAAGGAAGAGACAGATTGTGGACGAAAGATACACA 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 AGAGACGAAATGGGTAATAAGCTGGGAAGGAAGAGACAGATTGTGGACGAAAGATACACT 229
Query 234 AAGCCACAACAAGGTTTATACATGAGCAAAGATGTTGACATTAAAAAGCTTAAGAAACTC 293
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 230 AAGCCACAACAAGGTTTATACATGAGCAAAGATGTCGACATTAAAAAGCTTAAGAAACTC 289
Query 294 ATCTTAGAGTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCCCCTCCTCCCAT 353
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 290 ATCTTAGACTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAA---CCTCCTCCCAT 346
Query 354 CATGATCTTGAAGAATGTCCTATTTGCTTTCTGTATTATCCGAGTCTTAATAGGTCAAGA 413
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 347 CATGATCTTGAGGAATGTCCTATTTGCTTTCTGTACTATCCGAGCCTTAATAGGTCAAGA 406
Query 414 TGTTGTATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TGTTGTATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCT 466
Query 474 CAACCTACTCAATGCCCTTTTTGCAAAACATCCAATTATGCTGTCGAGTATCGTGGAGGG 533
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 CAACCTACTCAATGCCCGTTTTGCAAAACATCCAATTATGCTGTCGAGTATCGTGGAGGG 526
Query 534 AAAACTAAAGAGGAGAAGAGCTTTGAACAAATTGAAGAGCAGCGAGTTATAGAAGCCAAA 593
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 527 AAAACTAAAGAGGAGAAGAGCATTGAACAAATTGAAGAGCAGCAAGTTATAGAAGCCAAA 586
Query 594 ATAAGGATGAGGCAGAAGGAAGTTGAAGATGATGAAGAAAGAATGCAGAAACGTCTGGAG 653
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 587 ATAAGGATGAGGCAGAAGGAAGTTGAAGAAGATGAAGAAAGAATGCAGAAACGTCTGGAA 646
Query 654 TCATATTCTTCTAGTTCTAGCACTAGTGCAGCGACTCTTGATACAGAGTATGGTTCTGCT 713
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 647 TCGTTTTCTTCTAGTTCTAGCACTAGTGCAGCGACTCTTGATACAGAATATGGTTCTGCT 706
Query 714 GCAGAGGATGATGAGGAAATTGTTTCATCTCAAGAATCATGTCTTCCATCTCA-C-CACC 771
|||||||| |||||||||||||||| ||||||||| |||||||||| || || | ||||
Sbjct 707 GCAGAGGACGATGAGGAAATTGTTTTATCTCAAGACTCATGTCTTCT-TC-CATCGCACC 764
Query 772 CTCAGGTTACAAGGGACGGTCAGTTTGACTTTGATCTTGAAGATATAATGGTCATGGAAG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CTCAGGTTACAAGGGACGGTCAGTTTGACTTTGATCTTGAAGATATAATGGTCATGGAAG 824
Query 832 CAATATGGCTTTCGATGCAGGAACCAGGAATTCAGAGAAACACATCACCTGATGATATTT 891
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CAATATGGCTCTCGATGCAGGAACCAGGAATTCAGAGAAACACATCACCTGATGATATTT 884
Query 892 CAGAAAAAGATCGTAATGAGGAACCATCAACTCCGTCATCATCATCTCCATCAGGTGGGC 951
|||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 885 CAGAAAAAGATCATAATGGGGAACCATCGACTCCGTCATCATCATCTCCATCAGGTGGGC 944
Query 952 TAGCTTGTGCAATTGCTGTTCTTGCCGAACGTCAGCAAATGGTTGGCGTATCTTCTTCGA 1011
||||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||| || |
Sbjct 945 TAGCTTGTGCAATCGCTGTCCTTGCTGAACGCCAGCAAATGGTTGGCGAATCTTCCTCCA 1004
Query 1012 ATCAAAACGTTAACCTTGCATCACAAAACCTTGTTCCAGACAATGGTAACAACAGTCATT 1071
||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1005 ATCAAAACGTTGACCTTGCATCACAAAACATGGTTCCAGACAATTGTAACAACAGTCATT 1064
Query 1072 ACAATGCCATAGAACAGGATAGTAACCATTACCTTCAAGGAGCAGGAATCAGCTATACAA 1131
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACAATGCCATAGAACAAGATAGTAACCATTACCTTCAAGGAGCAGGAATCAGCTATACAA 1124
Query 1132 GATCAGATATGACTGATGATAGCGGCGGTGAGACTTCCAGGGAAGTTACATGGCAATAGA 1191
|||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1125 GATCTGATATGTCTGATGATAGTGGCGGCGAGACTTCCAGGGAAGTTACATGGCAATAGA 1184
Query 1192 GAGTTCCCAAAGGT-AAAGAGGAAAGCTTCAAAGTTGTTATATAGTCTTTTGTTTATATT 1250
| ||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||
Sbjct 1185 G--TTCCCAAAGGTTAAAAAGGAAAGCTTCAAAGTTGTTATATAGTCTTT-GCTTATATT 1241
Query 1251 ATGTTAGCGGGAGTGAATGG-TTTT-AGATTGTTAGTTAGTTTTGAGGGTGTATGTTGAT 1308
||||||| | |||||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 1242 ATGTTAGTGTGAGTGAATGGATTTTTAGATTGTTAGTTAGTTTTCAGGGTGTATGTTGAT 1301
Query 1309 CACTTCATACATGTGCCAATAAGAAAAACCAAAACGATTTTCAATTCCTCCTACAGAAGG 1368
|| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct 1302 CATTTCATACATGTGCCAATAGGAAAAACCAAAACGATTTTCAGTTCCTTATACAGAAGG 1361
Query 1369 TTGGTTGTTTGGTT 1382
||||||||||||||
Sbjct 1362 TTGGTTGTTTGGTT 1375
> Ahg927252 jgi|Araly1|927252|scaffold_202813.1
Length=1261
Score = 398 bits (215), Expect = 7e-110
Identities = 406/494 (82%), Gaps = 30/494 (6%)
Strand=Plus/Plus
Query 183 ATGGGTAATAAGCTGGGAAGGAAGAGAC-AGATTGTGGACGAAAGATACACAAAGCCACA 241
|||||||||||| ||||||||||||| | || | ||||| ||||| || |||||| | |
Sbjct 21 ATGGGTAATAAGTTGGGAAGGAAGAGGCAAG-TGGTGGAAGAAAGGTATACAAAG-C-C- 76
Query 242 ACAAGGTTTATACATGAGCAAAGATGTTGACATTAAAAAGCTTAAG-AAACTCATCT-TA 299
||||||||| || ||| |||||||||||| ||||||||| | || ||||| || | ||
Sbjct 77 ACAAGGTTTGTATGTGAATAAAGATGTTGACGTTAAAAAGC-TCAGAAAACTGAT-TGTA 134
Query 300 GAGTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCCCCTCCTCCCATCATGAT 359
|||||||||||||||||||| ||||| || || |||| || ||| | |||
Sbjct 135 GAGTCTAAGCTTGCTCCTTGCTATCCCGGAGACGATGAAA------GCTGCCA-C--GAT 185
Query 360 CTTGAAGAATGTCCTATTTGCTTT-CTGTATTATCCGAGTCTTAATAGGTCAAGATGTTG 418
||||||||||| || ||||| ||| ||||||||||| || || ||||| |||||||||||
Sbjct 186 CTTGAAGAATGCCCCATTTG-TTTCCTGTATTATCCTAGCCTCAATAGATCAAGATGTTG 244
Query 419 TATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTCAACC 478
||||||||||| |||||||| || ||| ||| ||||||| |||||||||||||| ||
Sbjct 245 CATGAAAAGCATCTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTCGGCC 304
Query 479 TACTCAATGCCCTTTTTGCAAAACAT-CCAATTATGCTGTCGAGTATCGTGGAGGGAAA- 536
|||||| ||||| ||||| ||||| | ||||||||||||||||||||||||| | |||
Sbjct 305 TACTCAGTGCCCATTTTGTAAAAC-TCCCAATTATGCTGTCGAGTATCGTGG-CGTAAAG 362
Query 537 ACTAAA-GAGGAGAAGAGCTTTGAACAAATTGAAGAGCAGCGAGTTATAGAAGCCAAAAT 595
|| ||| ||||| ||| || |||||||| |||||||||| || || ||||||||||||||
Sbjct 363 AC-AAAGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAAT 421
Query 596 AAGGATGAGGCAGAAGGAAGTTGAAG-ATGATGAAGA-AAGAATGCAGAAACGTCTGGAG 653
||||||||||||||||||| | | || |||||||||| || ||||||||||||||| ||
Sbjct 422 AAGGATGAGGCAGAAGGAAAT-GCAGGATGATGAAGAGAA-AATGCAGAAACGTCTTGAA 479
Query 654 TCATATTCTTCTAG 667
|||| || |||||
Sbjct 480 TCATGGTCCTCTAG 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5