BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G17147.1 Length=579 Score E Sequences producing significant alignments: (Bits) Value Ahg471916 jgi|Araly1|471916|fgenesh2_kg.1__1870__AT1G17147.1 579 1e-164 > Ahg471916 jgi|Araly1|471916|fgenesh2_kg.1__1870__AT1G17147.1 Length=443 Score = 579 bits (313), Expect = 1e-164 Identities = 403/446 (90%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 52 CCAAAAATATGTCTGCAGGAGTGAGATCTGAACCGATGAAGGTTGTCTTCATTAACACAC 111 |||||| ||||||||||||||| |||||||| ||||||||||| || ||||||||||||| Sbjct 3 CCAAAAGTATGTCTGCAGGAGTAAGATCTGAGCCGATGAAGGTCGTTTTCATTAACACAC 62 Query 112 AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAATTGTTCAAGAACTCACAGGTAAAA 171 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 63 AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAGTTGTTCAAGAACTCACCGGTAAAA 122 Query 172 ACGCAGTCGTCGCCGACGGTCCTTATGAATTCTCCGGTCAAGGGTACGGTGGCAAAGATT 231 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct 123 ACGCAGTCGTCGCCGACGGTCCTTTTGAATTCTCCGGCCAAGGCTACGGTGGAAAAGATT 182 Query 232 CATCACAGCGGTTTTGTGGCGTAGGAAAAGAAGCAGAAAGAGGTGTAGAGACGACGGAGT 291 |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 183 CATCACAGCGGTTTTGCAGCGTAGGAAAAGAAACAGAAGGAGGTGTAGAGACGACGGAGT 242 Query 292 TCGATAGTTTTTTCAGAGAGATGCCTCCGGTCGGCGAATTGTATAATCTTTGGTCAGACC 351 |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 243 TCGATAGTGTTTTCAGGGAGATGCCTCCGGTCGGCGAATTGCATAATCTTTGGTCAGACA 302 Query 352 ATTGACTAGACTAATAATTCGTTCttt-ttt--ttCCCACAATATTAAGGCCCATTGGGT 408 ||||||| || | |||||| ||| ||| ||| |||| |||||||||||||||||| Sbjct 303 ATTGACTGGAGTGATAATTAGTT-TTTATTTAATTCCTTT--TATTAAGGCCCATTGGGT 359 Query 409 TTAATATTATTATCTCAAGCCTATGTGAAACACGAATGTTCCTTAGAAGGTGAACTTCtt 468 ||||| ||||||||||| |||| ||| |||||||| || |||| |||| ||||||||||| Sbjct 360 TTAATCTTATTATCTCAGGCCTTTGTAAAACACGAGTGATCCTAAGAATGTGAACTTCTT 419 Query 469 tttttttGCTTAATGCATTAATGTAT 494 |||| ||||||||||||||||||| Sbjct 420 TTTTG--GCTTAATGCATTAATGTAT 443 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21176351895 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5