BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G17147.1

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471916 jgi|Araly1|471916|fgenesh2_kg.1__1870__AT1G17147.1         579    1e-164


> Ahg471916 jgi|Araly1|471916|fgenesh2_kg.1__1870__AT1G17147.1
Length=443

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 403/446 (90%), Gaps = 8/446 (2%)
 Strand=Plus/Plus

Query  52   CCAAAAATATGTCTGCAGGAGTGAGATCTGAACCGATGAAGGTTGTCTTCATTAACACAC  111
            |||||| ||||||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct  3    CCAAAAGTATGTCTGCAGGAGTAAGATCTGAGCCGATGAAGGTCGTTTTCATTAACACAC  62

Query  112  AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAATTGTTCAAGAACTCACAGGTAAAA  171
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  63   AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAGTTGTTCAAGAACTCACCGGTAAAA  122

Query  172  ACGCAGTCGTCGCCGACGGTCCTTATGAATTCTCCGGTCAAGGGTACGGTGGCAAAGATT  231
            |||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||
Sbjct  123  ACGCAGTCGTCGCCGACGGTCCTTTTGAATTCTCCGGCCAAGGCTACGGTGGAAAAGATT  182

Query  232  CATCACAGCGGTTTTGTGGCGTAGGAAAAGAAGCAGAAAGAGGTGTAGAGACGACGGAGT  291
            ||||||||||||||||  |||||||||||||| ||||| |||||||||||||||||||||
Sbjct  183  CATCACAGCGGTTTTGCAGCGTAGGAAAAGAAACAGAAGGAGGTGTAGAGACGACGGAGT  242

Query  292  TCGATAGTTTTTTCAGAGAGATGCCTCCGGTCGGCGAATTGTATAATCTTTGGTCAGACC  351
            |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  243  TCGATAGTGTTTTCAGGGAGATGCCTCCGGTCGGCGAATTGCATAATCTTTGGTCAGACA  302

Query  352  ATTGACTAGACTAATAATTCGTTCttt-ttt--ttCCCACAATATTAAGGCCCATTGGGT  408
            ||||||| || | |||||| ||| ||| |||  ||||     ||||||||||||||||||
Sbjct  303  ATTGACTGGAGTGATAATTAGTT-TTTATTTAATTCCTTT--TATTAAGGCCCATTGGGT  359

Query  409  TTAATATTATTATCTCAAGCCTATGTGAAACACGAATGTTCCTTAGAAGGTGAACTTCtt  468
            ||||| ||||||||||| |||| ||| |||||||| || |||| |||| |||||||||||
Sbjct  360  TTAATCTTATTATCTCAGGCCTTTGTAAAACACGAGTGATCCTAAGAATGTGAACTTCTT  419

Query  469  tttttttGCTTAATGCATTAATGTAT  494
            ||||   |||||||||||||||||||
Sbjct  420  TTTTG--GCTTAATGCATTAATGTAT  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21176351895


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5