BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17150.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471917 jgi|Araly1|471917|fgenesh2_kg.1__1871__AT1G17150.1 1631 0.0
> Ahg471917 jgi|Araly1|471917|fgenesh2_kg.1__1871__AT1G17150.1
Length=1206
Score = 1631 bits (883), Expect = 0.0
Identities = 1103/1209 (91%), Gaps = 16/1209 (1%)
Strand=Plus/Plus
Query 9 GTGCATTGATTTTGTGTTCATGGCTTTTGGTTTGCTTCTCTTGCTCATCGCCGTCACAAC 68
|||||||||||||||||| ||||||||| |||||| ||||||| ||| ||||||||||||
Sbjct 6 GTGCATTGATTTTGTGTTTATGGCTTTTTGTTTGCCTCTCTTGTTCAACGCCGTCACAAC 65
Query 69 AAGTCGCCCAATCACTCGG-CCAAAAGTATTCGACGTTCGAAGTTATGGTGCTAAAGGTG 127
||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 66 AAGTCGCCCGATCACT-GGACCAAAAGTATTCGACGTTCGAAGATATGGTGCTAAAGGTG 124
Query 128 ACGGTAAAATGGATAACACCAATGCGTTCACAAATGCATGGAAAGATGCATGCAGATGGA 187
||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 125 ACGGTAAAACGGATAATACCAATGCATTCACAAATGCATGGAAAGATGCATGCACATGGA 184
Query 188 ATGGACCAAGCAAAATGTACATACC-ACTAGGAACATTCTATCTTGGTGGTGTAACGTTT 246
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 185 ATGGACCAAGCAAAATGTACATACCGA-AAGGAAGATTCTATCTTGGTGGTGTAACGTTT 243
Query 247 GTAGGACCATGCGATGGTAAGATCTCGTTTGTCATTGATGGAACTTTGTTGGCTCCTCCG 306
| |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 GGAGGACCATGCAACGGTAAGATCTCGTTTGTCATCGATGGAACTTTGTTGGCTCCTCCG 303
Query 307 AACAACGACGACATTAAAAAGGAAATATGGATAAACTTCCGCTACATCAACTATCTCACG 366
||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 304 AACAACGACGACATTAAAAAGGAAACGTGGATCAACTTCCGCTACATCGACTATCTCACG 363
Query 367 GTCTTCGGGGATGGCACCCTCGACGGCCAAGGAAAAAAGTCATGGTCACTAATTGATTGC 426
|||| ||||| ||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct 364 GTCTCCGGGGGTGGCACCGTCGACGGCCAAGGAAAAAGGTCTTGGTCACTAAATGACTGT 423
Query 427 CAGAAGGACAATAATTGTCCCAAACTCGCTATAAATATGGGGTTCGATTTCGTAAAAAAC 486
|| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 424 CACAAGAACAATAATTGTCCTAAACTTGCTATAAATATGGGGTTCGATTTCGTAAAAAAG 483
Query 487 TCAAGCATGAATGGGATAACATCACTCAACAGTAAAGCCGGACACTTCAATTTCTTATCC 546
||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 484 TCAAGAATGAATGGGATAACATCACTCAACAGCAAAGCAGGACACTTAAATTTCTTCTCC 543
Query 547 GTTGACCACTTCAG-CATCACTAGAGTCAACAT-AATAGCTCCCAGCAATAGTCCCAACA 604
|||||||||||| | ||| || ||||| | | || ||||||| |||||||||||||||
Sbjct 544 GTTGACCACTTC-GACATTACCGGAGTCGGCCTGAA-AGCTCCCGGCAATAGTCCCAACA 601
Query 605 CTGACGGAATCAAAATAGCTTTATCAAGTAACATGCAAATCTCAAACACTCACATCAGCA 664
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CTGACGGGATCAAAATAGCTTTATCAAGTAACATGCAAATCTCAAACACTCACATCAGCA 661
Query 665 CCGGAGACGATTGTATCGCAATGCTCTCTGGAAACACAAATTTTGATATCTATAATGTCA 724
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 662 CCGGAGACGATTGTATCGCAATGCTCTCAGGAAACACAAATTTTGATATCTATAATGTCA 721
Query 725 AGTGCGGACCGGGACATGGAATTAGTATTGGAAGCTTAGGAAAAAACAAAGACGA-AAAG 783
|||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||
Sbjct 722 CGTGCGGACCGGGACATGGGATCAGTATCGGAAGCTTAGGAAAAAACAAAGACGAGAAA- 780
Query 784 AATGTTAATGGTTTAATGGTTAGAAATTCGGTCTTTACCGGTACGACCAACGGTATACGG 843
|||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 781 AATGTTAAGGGTTTAACGGTTAGAGATTCGGTCTTTACCGGTACGACCAACGGTATACGG 840
Query 844 ATCAAGACATGGGAATCTTCAGCTTCAACAATCCG-AATTATC-AATTTAGTGTATGAGA 901
||||||||||||||||||||||||||||| ||| | |||| || ||| | || ||| |||
Sbjct 841 ATCAAGACATGGGAATCTTCAGCTTCAACCATC-GTAATT-TCCAATCTCGTATATAAGA 898
Query 902 ATCTACAGATGATAAATGTTGAAAATCCTATCGGCATTGATCAAAAATACTGTCCTTACC 961
|||||||||||||| ||||||||| ||||||| ||||||||| || || ||||||||||
Sbjct 899 ATCTACAGATGATAGATGTTGAAAGTCCTATCAACATTGATCAGAAGTATTGTCCTTACC 958
Query 962 CGCCATGCAGCAATAT-GGGAGATTCTCACATTCAGATCCGAAACGTGACACTAAAGAAC 1020
|||| |||| || || ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 959 CGCCCTGCAATAA-ATTGGGAGATTCTCACATTCAGATCCAAAACGTGACATTAAAGAAC 1017
Query 1021 ATTTGGGGAACATCAAAGAATAAAGTGGCTGTGAAATTTCAATGTAGCAAAACCTTTCCT 1080
||||||||||| || | ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1018 ATTTGGGGAACGTCGAGGAACAAAGTGGCTGTGAAATTTCAATGTAGCAAAAGCTTTCCT 1077
Query 1081 TGCAAAGATGTTCAGTTAATTGACATTAACTTAACTCACCATGGAGTCGACGGTCCTGCA 1140
|||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 1078 TGCAAAGATGTTCAATTAGTTGACATTAACTTAACGCACAATGGAGTCGACGGTCCTGCT 1137
Query 1141 AGTGCGTTGTGTGAGAACGTTGATGGATCTGCTACTGGGAAGATGGTTCCTCCGCATTGT 1200
| |||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||||
Sbjct 1138 ATTGCGTTGTGTGATAACGTTGAAGGATCTGCTACTGGCAGGATAATTCCTCCGCATTGT 1197
Query 1201 CTAAGTTGA 1209
|||| ||||
Sbjct 1198 CTAAATTGA 1206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5