BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17160.1
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312683 jgi|Araly1|312683|fgenesh1_pm.C_scaffold_1001463 1592 0.0
> Ahg312683 jgi|Araly1|312683|fgenesh1_pm.C_scaffold_1001463
Length=1143
Score = 1592 bits (862), Expect = 0.0
Identities = 1066/1159 (92%), Gaps = 36/1159 (3%)
Strand=Plus/Plus
Query 43 GATGATGAAAGGGATCTCTTCAGTTTCTCAATCGATCAATTATAATCCATACATCGAATT 102
||||| |||||||| | ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 3 GATGAAGAAAGGGA--T-TTCAGTTTCTCAATCGATCAATTTTAATCCAAACATCGAATT 59
Query 103 CAATCGACCGCAGCTTCAGATCAGTACTGTGAATCCCAATCCAGCTCAATCTCGATTTTC 162
|||||||||||| |||||||||| ||||||||||| |||| | | ||||||||||||||
Sbjct 60 CAATCGACCGCAACTTCAGATCAACACTGTGAATCCAAATCTAACCCAATCTCGATTTTC 119
Query 163 CCG-CC-C--T--C---GATCCCTCCGTGTTCTCTCAC--T-C-TC--CGCCGATCCATC 207
||| || | | | ||||||||||||||||||| | | | || || |||||||||
Sbjct 120 CCGCCCTCTTTCCCGAAGATCCCTCCGTGTTCTCTCCCTATCCGTCGACGTCGATCCATC 179
Query 208 GGCAAATCGGAATCCTAAATCAGCCGTTGACGCACACGCGCCGCCACTGGTGGTTGTGGG 267
||||||||||||| ||||||||| | | | |||||||||| ||||||||||||||
Sbjct 180 GGCAAATCGGAATGCTAAATCAG-C--T-----A-ACGCGCCGCCTCTGGTGGTTGTGGG 230
Query 268 ATCTGCGAACGCCGATATCTATGTGGAGATCGAGAGATTACCCAAGGAAGGG-GAAACGA 326
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 231 ATCTGCGAACGCCGATATCTATGTGGAGATCGAGAGATTACCCAAGG-AGGGCGAAACGA 289
Query 327 TTTCGGCCAAGACAGGGCAAACGCTCGCCGGAGGAAAAGGCGCGAATCAGGCGGCGTGTG 386
|||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 290 TTTCAGCCAAGACAGGGCAAACCCTCGCCGGCGGAAAAGGCGCGAATCAGGCTGCGTGTG 349
Query 387 GAGCGAAGCTAATGTATCCGACTTACTTCGTTGGTCGTTTGGGAGAGGACGCGCACGGGA 446
|||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 350 GAGCGAAGCTGCTTTATCCGACTTACTTCGTTGGTCGTTTGGGGGAGGACGCGCACGGGA 409
Query 447 AGCTAATAGCTGAGGCGTTGGGCGATGATGGGTGTGGGGTTCACTTGGACTACGTGAGAT 506
|||| |||||||||||||||||| ||||||||||| |||| |||||| ||||| ||||
Sbjct 410 AGCTTATAGCTGAGGCGTTGGGC---GATGGGTGTGGTGTTCGCTTGGATTACGTTAGAT 466
Query 507 CTGTGAATAATGAGCCGACGGGACACGCGGTGGTGATGCTTCAGTCGGACGGTCAGAATT 566
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 467 CGGTGAATGATGAGCCGACGGGACACGCGGTGGTGATGCTTCAATCGGACGGTCAGAATT 526
Query 567 CGATCATTATCGTTGGTGGTGCAAATATGAAAGCTTGGCCTGAGATTATGAGC-GATGAT 625
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 527 CGATCATTATCGTTGGTGGTGCAAATATGAAAGCTTGGCCTGAGAAGATGA-CTGATGAT 585
Query 626 GATCTTGAGATTGTGAGGAATGCTGGTATTGTGCTTCTGCAAAGGGAGATCCCAGATTCC 685
||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 586 GATCTTGAGATCGTGAGGAATGCTGGTATTGTGCTGCTTCAAAGAGAGATCCCAGATTCC 645
Query 686 ATCAATATTCAAGTTGCTAAGGCTGTGAAGAAAGCAGGTGTTCCAGTCATCCTTGATGTG 745
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 646 ATCAATATTCAAGTTGCTAAGGCTGTGAAGAAAGCAGGTGTTCCGGTCATCCTTGATGTT 705
Query 746 GGAGGAATGGATACGCCTATACCAAATGAGCTATTGGATTCCATTGATATCTTGAGCCCC 805
||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 706 GGAGGAATGGATACGCCAATACCGAATGAGCTATTGGATTCCGTTGATATCTTGAGTCCG 765
Query 806 AATGAAACTGAGCTCAGTCGCTTGACAGGAATGCCAACTGAAACTTTTGAACAGATTAGC 865
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 766 AATGAAACTGAGCTCAGTCGCTTGACCGGAATGCCAACTGAAACTTTTGAACACATTAGC 825
Query 866 CAAGCTGTTGCAAAGTGCCATAAGTTGGGAGTTAAGCAAGTTCTAGTAAAACTCGGGTCC 925
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 826 CAAGCTGTTGCAAAGTGCCATAAGTTGGGAGTTAAGCAAGTCCTAGTGAAACTCGGGTCC 885
Query 926 AAAGGATCTGCACTATTCATACAAGGGGAAAAACCAATCCAGCAGTCTATCATACCGGCT 985
||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 886 AAAGGATCTGCACTATTCATAGAAGGGGAAAAACCAATCCAGCAGTCTATAATAGCGGCT 945
Query 986 GCACAAGTGGTTGATACTACAGGAGCTGGGGATACTTTCACTGCAGCATTTGCAGTCGCT 1045
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 946 GCACAAGTGGTTGATACTACAGGAGCCGGGGATACTTTCACAGCAGCATTTGCAGTGGCT 1005
Query 1046 ATGGTAGAGGGCAAGTCC-CATGAGGAATGCTTGAGATTTGCTGCTGCAGCTGCCTCTCT 1104
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ATGGTAGAGGGCAAG-CCACATGAGGAATGCTTGAGATTTGCTGCTGCAGCTGCCTCTCT 1064
Query 1105 TTGTGTCCAAGTAAAGGGTGCAATACCGAGCATGCCTGACCGAAAATCTGTTTTGAAGCT 1164
|||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct 1065 TTGTGTCCAAGTAAAGGGTGCAATACCGAGCATGCCCGACCGAACATCTGTCTTGAAGCT 1124
Query 1165 CCTTAAATTTAGTATCTAA 1183
|||||||| ||||||||||
Sbjct 1125 CCTTAAATCTAGTATCTAA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49521669183
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5