BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17170.1
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471920 jgi|Araly1|471920|fgenesh2_kg.1__1874__AT1G17170.1 1085 0.0
Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778 449 1e-125
Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 263 2e-69
Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1 261 6e-69
> Ahg471920 jgi|Araly1|471920|fgenesh2_kg.1__1874__AT1G17170.1
Length=748
Score = 1085 bits (587), Expect = 0.0
Identities = 704/759 (93%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 30 GAGCTTAATCAAGAGCAACAATGGCAGATGAGGTGATTCTTCTGGATTTCTGGGCGAGTA 89
|||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 1 GAGCTTAATCAAGAACAACAATGGCAGAGGAGGTGGTTCTTCTGGATTTCTGGGCAAGTA 60
Query 90 TGTTTGGGATGAGGACAAGAATTGCTCTGGCGGAGAAAAGAGTTAAGTACGATCACAGAG 149
||||||| ||||| | ||||||||||||| ||||||||||||| || |||||| ||||||
Sbjct 61 TGTTTGGCATGAGAATAAGAATTGCTCTGTCGGAGAAAAGAGTCAAATACGATTACAGAG 120
Query 150 AAGAAGATCTATGGAATAAGAGCTCCTTGCTCCTCGAGATGAACCCGGTTCATAAGAAAA 209
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGAAGATTTATGGAATAAGAGCTCCTTGCTCCTCGAGATGAACCCGGTTCATAAGAAAA 180
Query 210 TTCCGGTTCTCATCCACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCGAGTACA 269
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCCCGGTTCTTATCCACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCGAGTACA 240
Query 270 TAGACGAGACTTGGCCCGACAATAACCCTCTCCTTCCCTCCGATCCTTACAAGAGAGCTC 329
|||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 241 TAGACGAGACTTGGCCCGACAAAAACTCTCTCCTTCCCTCTGATCCTTACAAGAGAGCTC 300
Query 330 ATGCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGCGAGAAGGATTT 389
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 ATGCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGCGAGGAGGATTT 360
Query 390 GGGCGGTCAAAGGTGAGGAGCAAGAAGCAGCCAAGGAGTTAATCGAAATACTCAAGACGC 449
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 GGGCGGCCAAAGGTGAGGAGCAAGAAGCAGCCAAGGAGTTCATCGAAATACTCAAGACGC 420
Query 450 TAGAGTCTGAGCTTGGAGACAAAAAGTACTTTGGAGACGAAACTTTTGGGTATGTAGATA 509
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 421 TAGAGTCCGAGCTTGGAGACAAAAAATACTTTGGAGACGAAACTTTCGGGTATGTGGATA 480
Query 510 TAGCTCTCATTGGATTCCATAGCTGGTTTGCAGTGTACGAGAAGTTTGGAAATGTCAGTA 569
||||||||||||||||| |||||||||||| ||| |||||||||||||| ||| ||||||
Sbjct 481 TAGCTCTCATTGGATTCTATAGCTGGTTTGGAGTATACGAGAAGTTTGGGAATATCAGTA 540
Query 570 TCGAATCTGAGTGTTCGAAATTGGTTGCGTGGGCCAAAAGGTGTTTGGAGAGAGAGAGCG 629
||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| |
Sbjct 541 TCGAATCAGAGTGTTCGAAATTGATTGCGTGGGCCAAACGGTGTTTGGATAGAGAGAGTG 600
Query 630 TCGCTAAAGCCCTGCCTGAGTCAGAGAAGGTCATTACATTCATTTCCGAAC-GTAGGAAG 688
||||||||||| |||| ||||||||||||||| ||| ||| ||||||| | ||||||||
Sbjct 601 TCGCTAAAGCCTTGCCAGAGTCAGAGAAGGTCGCTACGTTCGTTTCCGA-CTGTAGGAAG 659
Query 689 AAACTTGGGTTGGAGTAAATCTCTACTTTGTTATGTTGATCTGTTGTTGCTTTGTTCTAT 748
|||||||||||||||||||||||| ||| || ||| || ||| |||||||||||
Sbjct 660 AAACTTGGGTTGGAGTAAATCTCT-CTTC-TT-TGTA-AT--GTT----CTTTGTTCTAT 709
Query 749 TTTCTTTGAGGTCTATGTAATGCATAATAATACCAATTT 787
||||||||||||||||||| |||||||||||||||||||
Sbjct 710 TTTCTTTGAGGTCTATGTA-TGCATAATAATACCAATTT 747
> Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778
Length=594
Score = 449 bits (243), Expect = 1e-125
Identities = 484/596 (81%), Gaps = 33/596 (6%)
Strand=Plus/Plus
Query 50 ATGGCAGATGAGGTGATTCTTCTGGATTTCTGGGCGAGTATGTTTGGGATGAGGACAAGA 109
|||||||| |||||||||||||| ||||||||| ||||||||||||| |||||||| ||
Sbjct 1 ATGGCAGACGAGGTGATTCTTCTTGATTTCTGGCCGAGTATGTTTGGAATGAGGACGAGG 60
Query 110 ATTGCTCTGGCGGAGAAAAGA-GTTA-AGTACGATCACAGAGAAGAAGATCTATGGAATA 167
|||||||| | ||||||| | || | | | |||| |||||||| |||||||||||||
Sbjct 61 ATTGCTCTAGAAGAGAAAA-ATGTCATA-TTCGATTACAGAGAACAAGATCTATGGAA-C 117
Query 168 AG-AGCTCC--TTGCTCCTCGAGATGAACCCGGTTCATAAGAAAATTCCGGTTCTCATCC 224
|| ||| || || |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 118 AGAAGC-CCGATT-CTCCTCGAGATGAATCCGGTTCATAAGAAAATACCGGTTCTCATCC 175
Query 225 ACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCG-AGTACATAGACG-AGACTTG 282
|||||||||||||||| |||||||| ||||| || || | | ||||| |||| || |||
Sbjct 176 ACAATGGTAAACCGGTCTGTGAATCACTCATCCAAAT-GCAATACATCGACGAAG-TTTG 233
Query 283 GCCCGA-CAATAA-CCCTCTCCTTCCCTCCGATCCTTA-CAAGAGAGCTCATGCCAAATT 339
| || | ||| || ||| || ||||| || || ||||| ||| |||||||||||||||||
Sbjct 234 G-CCTAGCAA-AACCCCGCTTCTTCCTTCTGACCCTTACCAA-AGAGCTCATGCCAAATT 290
Query 340 CTGGGCCGACTTCATCGACAAAAAGGTGAATG-TTACGGCGAGAAGGATTTGGGCG-GTC 397
|||| || ||||||||||| |||||| ||| || | ||||| |||||||| | | |
Sbjct 291 TTGGGGAGATTTCATCGACAAGAAGGTGTATGCTT-CAGCGAGGTTGATTTGGG-GAG-C 347
Query 398 -AAAGGTGAGGAGCAAGAAGC--AG-CCAAGGAGTTAATCGAAATACTCAAGACGCTAGA 453
||||| || ||||| || || | |||||||| ||||| ||||||||||| |||||
Sbjct 348 GAAAGGCGAAGAGCATGAGGCGGGGAAGAAGGAGTTCATCGAGATACTCAAGACACTAGA 407
Query 454 GTCTGAGCTTGGAGACAAAAAGTACTTTGGAGACGAAACTTTTGGGTATGTAGATATAGC 513
|||||||||||||||||||| |||||||||| ||||| || || ||||| ||||| ||
Sbjct 408 GTCTGAGCTTGGAGACAAAACTTACTTTGGAGGGGAAACATTCGGTTATGTTGATATTGC 467
Query 514 TCTCATTGGATTCCATAGCTGGTTTGCAGTGTACGAGAAGTTTGGAAATGTCAGTATCGA 573
|||||||||||| | |||||||||| || || ||||||||||| ||| ||| || ||
Sbjct 468 TCTCATTGGATTTTACAGCTGGTTTGAAGCATATGAGAAGTTTGGGAATTTCAACATTGA 527
Query 574 ATCTG-AGTGTTCGAAAT-TGGTTGCGTGGGCCAAAAGGTGTTTGGAGAGAGAGAG 627
| || ||||| | ||| || |||| ||||| ||||| ||| || ||||||||||
Sbjct 528 AG-TGGAGTGT-CTAAAACTGATTGCTTGGGCTAAAAGATGTGTGAAGAGAGAGAG 581
> Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774
Length=1941
Score = 263 bits (142), Expect = 2e-69
Identities = 267/325 (82%), Gaps = 18/325 (6%)
Strand=Plus/Plus
Query 59 GAGGTGATTCTTCTGGATTTCTGGGCGAGTATGTTTGGGATGAGGACAAGAATTGC-TCT 117
|||||||||||||| ||||||||| |||||||||| ||||||||||| || || || | |
Sbjct 10 GAGGTGATTCTTCTTGATTTCTGGCCGAGTATGTTCGGGATGAGGACGAGGATCGCAT-T 68
Query 118 G-GCGGAGAAAAGAGTT-AAGTACGA-TCACAGAGAAGAAGATCTATGGAATAAGAGCTC 174
| | ||||||| | ||| || | || | ||||||||||||||||| |||| ||||| ||
Sbjct 69 GAG-GGAGAAAGGTGTTGAA-TTTGAGT-ACAGAGAAGAAGATCTAAGGAACAAGAG-TC 124
Query 175 C-TTGCTCCTCGAGATGAACCCGGTTCATAAGAAAATTCCGGTTCTCATCCACAATGGTA 233
| ||||| ||| ||||||| ||| |||| ||||| |||||||||||||||||||||||||
Sbjct 125 CTTTGCTTCTCCAGATGAATCCGATTCACAAGAAGATTCCGGTTCTCATCCACAATGGTA 184
Query 234 AACCGGT-ATGTGAATCTCTCATTCAGAT-CGAGTACATAGACGAGA-CTTGGCC-CGAC 289
||||||| | |||||| |||| ||| | | ||||||| |||||| || || | | ||
Sbjct 185 AACCGGTTAAC-GAATCTATCATCCAGGTTC-AGTACATTGACGAGGTCT-GGTCTC-AC 240
Query 290 AATAACCCTCTCCTTCCCTCCGATCCTTACAAGAGAGCTCATGCCAAATTCTGGGCCGAC 349
|| |||||| ||||||| || ||||||||| ||||||| || || | ||||||||| ||
Sbjct 241 AAGAACCCTATCCTTCCTTCTGATCCTTACCAGAGAGCCCAGGCTAGATTCTGGGCTGAT 300
Query 350 TTCATCGACAAAAAGGTGAATGTTA 374
||||| ||||||||| | |||||||
Sbjct 301 TTCATTGACAAAAAGCTTAATGTTA 325
> Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1
Length=852
Score = 261 bits (141), Expect = 6e-69
Identities = 483/641 (75%), Gaps = 51/641 (8%)
Strand=Plus/Plus
Query 45 CAACAATGGCAGATGAGGTGATTCTTCTGGATTTCTGGGCGAGTATGTTTGGGATG-AGG 103
||| |||||| ||||| ||||| || |||||||||||| ||||| || ||| | | |
Sbjct 63 CAATAATGGCGGATGAAGTGATCCTCCTGGATTTCTGGCCGAGT-CCATTCGGA-GTAAG 120
Query 104 A-CAAGAATTGCTCTGGCG-GAGAAAAGAGTTAAGTACGA-TCACAGAGAAGAAG-ATCT 159
| ||||||| || || | | |||||| ||||| ||| || | ||||||||| || |||
Sbjct 121 AGCAAGAATCGCGCT-GAGAGAGAAAGGAGTTGAGTTTGAGT-ACAGAGAAG-AGAATC- 176
Query 160 ATG-GA-ATAAGAGCTCC-TTGCTCCTCGAGATGAACCCGGTTCATAAGAAAATTCCGGT 216
|| || | |||||| || ||||| ||| ||||||| |||||| | ||||| ||||||||
Sbjct 177 -TGAGAGACAAGAGC-CCTTTGCTTCTCCAGATGAATCCGGTTTACAAGAAGATTCCGGT 234
Query 217 TCTCATCCACAATGGTAAACCGGTATGTGAATCTC-TCA---TTCAGATCGAGTACATAG 272
||||||||||||||||||||| || |||||||| | | | || | || ||||||| |
Sbjct 235 TCTCATCCACAATGGTAAACCAGTTTGTGAATC-CATGAACGTT--GTTC-AGTACATCG 290
Query 273 ACGAGACTTGGCCCGACAATAACCCTCTCCTTCCCT-CCGATCCTTACAAGAGAGCTCAT 331
||||| |||| ||||||| |||||| |||| |||| ||||||||||| ||||||||||
Sbjct 291 ACGAGGTTTGGTCCGACAAAAACCCTATCCT-CCCTTCCGATCCTTACCAGAGAGCTCAA 349
Query 332 GCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGC-GAGAAGGATTTG 390
|||| ||| |||| ||| ||| |||||| ||| || || | || || ||| || ||
Sbjct 350 GCCAGATTTTGGGTCGATTTCGTCGACACCAAGCTGTTTGAGCCAGCAGATAAG-ATCTG 408
Query 391 GGCGGTC-AAAGGTGAGGAGCAAGA-AGCAGCCAAG---GAGT-TAATCGAAATACTCAA 444
| | | ||||| ||||| ||||| | |||||||| |||| || | ||| ||| ||
Sbjct 409 G-CAAACTAAAGGCGAGGAACAAGAGA-CAGCCAAGAAAGAGTATATT-GAAGCACTTAA 465
Query 445 GACGCTAGAGTCTGAGCTTGGAGACAAAAAGTACTTTGGAG-ACGAAACTTTTGGGTAT- 502
||| || || |||||||||||||||||| |||||||| | | || || ||||||| |
Sbjct 466 GACTCTTGAATCTGAGCTTGGAGACAAACCTTACTTTGGTGGA-GATACATTTGGGT-TC 523
Query 503 GTAGATATAGCTC-TCATTGGAT-TCCATAGCTGGTTTGCAGTGT-ACGAGAAGTTTGGA 559
|||||||| || | | | ||||| | | |||||||| | || | | ||||| || |
Sbjct 524 GTAGATATTGC-CATGACTGGATATT-ACAGCTGGTTCGAAGCATCA-GAGAAATTAGCT 580
Query 560 AA-TGTCAGTATCGAATCTGAGTGTTCGAAATTGGTTGCGTGGGCCAAAAGGTGTTTGGA 618
|| | |||| |||||| | |||||| | | | || | || | ||| || |||||||| |
Sbjct 581 AACT-TCAGCATCGAACCAGAGTGTCCCACACTGATGGCTTCGGCTAAGCGGTGTTTGCA 639
Query 619 GAGAGAGAGCGTCGCTAAAGCC-CTGCCTGAGTCAGAGAAG 658
|||||| ||||| | ||| | | || | ||| || ||||||
Sbjct 640 GAGAGAAAGCGTGGTTAA-GTCTCTTCATGATTCTGAGAAG 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31642021110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5