BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17180.1
Length=857
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778 913 0.0
Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 250 1e-65
> Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778
Length=594
Score = 913 bits (494), Expect = 0.0
Identities = 553/582 (95%), Gaps = 2/582 (0%)
Strand=Plus/Plus
Query 64 ATGGCAGACGAGGTGATTCTTCTTGATTTCTGGCCGAGCATGTTTGGAATGAGGACGAGG 123
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCAGACGAGGTGATTCTTCTTGATTTCTGGCCGAGTATGTTTGGAATGAGGACGAGG 60
Query 124 ATTGCTTTAGAAGAGAAAAATGTCAAATTCGATTACAGAGAACAAGATCTGTGGAACAAA 183
|||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 61 ATTGCTCTAGAAGAGAAAAATGTCATATTCGATTACAGAGAACAAGATCTATGGAACAGA 120
Query 184 AGCCCGATTCTCCTCGAGATGAATCCGGTTCATAAGAAAATACCGGTTCTCATCCACAAT 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCCCGATTCTCCTCGAGATGAATCCGGTTCATAAGAAAATACCGGTTCTCATCCACAAT 180
Query 244 GGTAATCCGGTATGTGAATCACTCATCCAGATCG-AATACATCGACGAAGTTTGGCCTAG 302
||||| ||||| ||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 181 GGTAAACCGGTCTGTGAATCACTCATCCAAAT-GCAATACATCGACGAAGTTTGGCCTAG 239
Query 303 CAAAACCCCACTTCTTCCTTCTGATCCTTACCAAAGAGCTCAGGCCAAATTTTGGGGAGA 362
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 240 CAAAACCCCGCTTCTTCCTTCTGACCCTTACCAAAGAGCTCATGCCAAATTTTGGGGAGA 299
Query 363 TTTCATTGATAAGAAGGTGTATGCTTCAGCGAGGTTGATTTGGGGAGCTAAAGGCGAAGA 422
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TTTCATCGACAAGAAGGTGTATGCTTCAGCGAGGTTGATTTGGGGAGCGAAAGGCGAAGA 359
Query 423 GCATGAGGCGGGGAAGAAGGAGTTCATCGAGATACTCAAGACACTAGAGTCTGAGCTTGG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCATGAGGCGGGGAAGAAGGAGTTCATCGAGATACTCAAGACACTAGAGTCTGAGCTTGG 419
Query 483 AGACAAGACTTACTTTGGAGGTGAAACATTCGGTTATGTTGATATAGCTCTCATTGGATT 542
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 420 AGACAAAACTTACTTTGGAGGGGAAACATTCGGTTATGTTGATATTGCTCTCATTGGATT 479
Query 543 TTACAGTTGGTTTGAAGCGTATGAGAAGTTTGGGAGTTTCAGCATTGAAGCCGAGTGTCC 602
|||||| ||||||||||| |||||||||||||||| ||||| |||||||| |||||||
Sbjct 480 TTACAGCTGGTTTGAAGCATATGAGAAGTTTGGGAATTTCAACATTGAAGTGGAGTGTCT 539
Query 603 AAAACTGATTGCTTGGGGTAAAAGGTGTGTGGAGAGAGAGAG 644
||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 540 AAAACTGATTGCTTGGGCTAAAAGATGTGTGAAGAGAGAGAG 581
> Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774
Length=1941
Score = 250 bits (135), Expect = 1e-65
Identities = 263/323 (81%), Gaps = 16/323 (5%)
Strand=Plus/Plus
Query 64 ATGGCAG-ACGAGGTGATTCTTCTTGATTTCTGGCCGAGCATGTTTGGAATGAGGACGAG 122
||||| | ||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1 ATGGC-GAACGAGGTGATTCTTCTTGATTTCTGGCCGAGTATGTTCGGGATGAGGACGAG 59
Query 123 GATTGCTTTAGAAG-AGAAAAATGTCAAATTCGATTACAGAGAACAAGATCTGTGGAACA 181
||| || || || | ||||| ||| |||| || ||||||||| ||||||| ||||||
Sbjct 60 GATCGCATT-GAGGGAGAAAGGTGTTGAATTTGAGTACAGAGAAGAAGATCTAAGGAACA 118
Query 182 AAAGCCCGATT-CTCCTCGAGATGAATCCGGTTCATAAGAAAATACCGGTTCTCATCCAC 240
| || || || || ||| ||||||||||| |||| ||||| || |||||||||||||||
Sbjct 119 AGAGTCCT-TTGCTTCTCCAGATGAATCCGATTCACAAGAAGATTCCGGTTCTCATCCAC 177
Query 241 AATGGTAATCCGGT-ATGTGAATC-ACTCATCCAGAT-CGAATACATCGACGAAGTTTGG 297
|||||||| ||||| | ||||| | |||||||| | | | ||||| ||||| || |||
Sbjct 178 AATGGTAAACCGGTTAAC-GAATCTA-TCATCCAGGTTC-AGTACATTGACGAGGTCTGG 234
Query 298 CCT-AGCAA-AACCCCACTTCTTCCTTCTGATCCTTACCAAAGAGCTCAGGCCAAATTTT 355
|| | ||| ||||| | | |||||||||||||||||||| ||||| ||||| | ||| |
Sbjct 235 TCTCA-CAAGAACCCTA-TCCTTCCTTCTGATCCTTACCAGAGAGCCCAGGCTAGATTCT 292
Query 356 GGGGAGATTTCATTGATAAGAAG 378
||| ||||||||||| || |||
Sbjct 293 GGGCTGATTTCATTGACAAAAAG 315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31718266944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5