BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17190.1
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471922 jgi|Araly1|471922|fgenesh2_kg.1__1876__AT1G17190.1 1256 0.0
Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 235 4e-61
Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1 202 4e-51
> Ahg471922 jgi|Araly1|471922|fgenesh2_kg.1__1876__AT1G17190.1
Length=913
Score = 1256 bits (680), Expect = 0.0
Identities = 849/928 (91%), Gaps = 21/928 (2%)
Strand=Plus/Plus
Query 8 AAACCGCAACCTCTATCATCCTCATCTACATTTCAATAAACACAAAGAGTTGAAAACATT 67
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1 AAACCTCAACCTCTATCATCCTCATCTACATTTCAATAAACAC-AAGAGTTGAAAAGATT 59
Query 68 AAATCGATATATCAGAACT-A--AACCGGATCTGAAAAATGGCGAACGACCAAGTGATTC 124
|||| | ||||||||| | ||||||||||||| ||||||| ||| |||||||||
Sbjct 60 AAAT---T-GATCAGAACTAATTAACCGGATCTGAAGAATGGCG---GACGAAGTGATTC 112
Query 125 TTCTTGATTACTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTGAGAAAG 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 113 TTCTTGATTACTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCAGAGAAAG 172
Query 185 GAGTCAAGTATGAGTACAAGGAAACAGATCCATGGGTTAAGACTCCTTTACTCATAGAGA 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 173 GAGTCAAGTATGAGTACAAGGAAACAGATCCATGGGTTAAGACTCCTTTGCTCATAGAGA 232
Query 245 TGAACCCGATTCACAAGAAGATTCCGGTTCTCATCCACAACGGTAAACCGATTTGTGAAT 304
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 233 TGAACCCCATTCACAAGAAGATTCCGGTTCTCATCCACAACGCTAAACCGATTTGTGAGT 292
Query 305 CTCTTATTCAGCTTGAGTACATTGATGAGGTTTGGTCCGATGCATCCCCAATCCTTCCCT 364
|||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 293 CTCTTATTCAGCTTGAGTACATCGATGAGGTTTGGTCCGATGCATACACAATCCTTCCCT 352
Query 365 CTGATCCTTACCAGAAGTCTCGAGCTAGATTTTGGGCTGAATTCATCGACAAAAAGTTTT 424
||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 353 CTGATCCTTACCAGAAGTCTCAAGCTAGATTCTGGGCAGAATTCATCGACAAAAAGTTTT 412
Query 425 ACGACCCATCATGGAAGGTATGGGCAACAATGGGCGAAGAACATGCAGCAGTGAAGAAGG 484
|||| ||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 413 ACGAGCCATCATGGAAGGTATGGGCAACAATGGGCGAAGAACTTGTTGCAGCCAAGAAGG 472
Query 485 AATTGTTGGAACATTTCAAGACACTTGAGACAGAGCTCGGAGACAAACCTTATTACGGTG 544
|||||||||||||||||||||||||||| |||||||| ||||||||| |||| || ||||
Sbjct 473 AATTGTTGGAACATTTCAAGACACTTGAAACAGAGCTTGGAGACAAATCTTACTATGGTG 532
Query 545 GTGAAGTATTTGGATACCTAGACATTGCATTAATGGGATACTACAGCTGGTTCAAGGCCA 604
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 533 GTGAAGTATTTGGATACGTAGACATTGCATTGATGGGATACTACAGCTGGTTCAAGGCCA 592
Query 605 TGGAGAAATTTGGTGAATTCAGTATCGAAACAGAGTTTCCTATATTGACTACGTGGACCA 664
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 593 TGGAGAAATTTGGTGAATTCAGTATCGAAACAGAGTTTCCTAAATTGACTACGTGGACCA 652
Query 665 AGAGGTGTTTGGAAAGAGAGAGTGTGGTCAAGGCATTGGCTGATTCTGATAGGATCATTG 724
|||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 653 AGAGGTGTTTAAAAAGAGAGAGTGTGGTTAAGGCACTGGCTGATTCTGATAGGATCATTG 712
Query 725 AGTATGTTTATGTCCTGAGGAAGAAATTTGGAGCAGCGTaaaaaaaTGGTTTGGGTTTCA 784
|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 713 AGTATGTTTATGTCATGAGGAAGAAATTTGGAGCAGAGTAGAAAAATGGTTTGGGTATCA 772
Query 785 AGAAGGCTGTTATTTTCTGTCTTTTA-TAATGTTTCATGTGAGGTTTGTAATTGTTATTT 843
||||| ||||||| |||||| |||| || ||||||||||||| |||||||||||| ||
Sbjct 773 AGAAGACTGTTATATTCTGTGTTTTTCTA-TGTTTCATGTGAGATTTGTAATTGTT-TTG 830
Query 844 CTGTCGTTTTGTTGAAAGTATGATAAACCGTAATAACGAAA--TGTTTACTGTACCCTAT 901
| | | ||||||||||||| |||| |||||| ||| |||||||||| | || |
Sbjct 831 -T-T-GAAAC-TTGAAAGTATGATTAACCATAATAAAAAAAAATGTTTACTGTTCTCTTT 886
Query 902 TAAATTCGACGACATTGCACTCAATTTG 929
| || ||||||||||||| ||||||||
Sbjct 887 TTTAT-CGACGACATTGCATTCAATTTG 913
> Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774
Length=1941
Score = 235 bits (127), Expect = 4e-61
Identities = 264/327 (81%), Gaps = 21/327 (6%)
Strand=Plus/Plus
Query 103 ATGGCGAACGACCAAGTGATTCTTCTTGATTACTGGCCAAGCATGTTCGGGATGAGGACG 162
|||||||||| | |||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 1 ATGGCGAACG---AGGTGATTCTTCTTGATTTCTGGCCGAGTATGTTCGGGATGAGGACG 57
Query 163 AAGATGGCTTTG-GCTGAGAAAGGAG-TCAAGTATGAGTACAAG-GAA-ACAGATCCATG 218
| ||| || ||| | |||||||| | | || | ||||||| || ||| | ||||| | |
Sbjct 58 AGGATCGCATTGAG-GGAGAAAGGTGTTGAA-TTTGAGTAC-AGAGAAGA-AGATCTAAG 113
Query 219 GGTTAAGACTCCTTTAC-TCATAGAGATGAACCCGATTCACAAGAAGATTCCGGTTCTCA 277
| |||| |||||| | || | ||||||| ||||||||||||||||||||||||||||
Sbjct 114 GAACAAGAGTCCTTTGCTTC-TCCAGATGAATCCGATTCACAAGAAGATTCCGGTTCTCA 172
Query 278 TCCACAACGGTAAACCGATTTGTGAATCTCTTATTCAGCTTGAGTACATTGATGAGGTTT 337
||||||| ||||||||| || |||||| | || ||| || |||||||||| ||||| |
Sbjct 173 TCCACAATGGTAAACCGGTTAACGAATCTATCATCCAGGTTCAGTACATTGACGAGGTCT 232
Query 338 GGTC-CG-ATGCATCCCCAATCCTTCCCTCTGATCCTTACCAGA-AGTCTCGAG-CTAGA 393
|||| | | | | ||| | ||||||| |||||||||||||||| || | | || |||||
Sbjct 233 GGTCTCACAAGAA-CCCTA-TCCTTCCTTCTGATCCTTACCAGAGAGCC-C-AGGCTAGA 288
Query 394 TTTTGGGCTGAATTCATCGACAAAAAG 420
|| |||||||| ||||| |||||||||
Sbjct 289 TTCTGGGCTGATTTCATTGACAAAAAG 315
> Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1
Length=852
Score = 202 bits (109), Expect = 4e-51
Identities = 433/579 (75%), Gaps = 64/579 (11%)
Strand=Plus/Plus
Query 178 GAGAAAGGAGTCAAGTATGAGTACAAGGA-AACAG-ATCCATG-G-GTTAAGA-CTCCTT 232
||||||||||| ||| ||||||| | || || || || | || | | |||| | ||||
Sbjct 140 GAGAAAGGAGTTGAGTTTGAGTAC-A-GAGAAGAGAAT-C-TGAGAGACAAGAGC-CCTT 194
Query 233 TAC-TCATAGAGATGAACCCGATTCACAAGAAGATTCCGGTTCTCATCCACAACGGTAAA 291
| | || | ||||||| ||| || |||||||||||||||||||||||||||| ||||||
Sbjct 195 TGCTTC-TCCAGATGAATCCGGTTTACAAGAAGATTCCGGTTCTCATCCACAATGGTAAA 253
Query 292 CC-GATTTGTGAATCTCTT-ATTCAGCTTG---AGTACATTGATGAGGTTTGGTCCGATG 346
|| | |||||||||| | | | | | ||| ||||||| || ||||||||||||||
Sbjct 254 CCAG-TTTGTGAATC-CATGAA-C-G-TTGTTCAGTACATCGACGAGGTTTGGTCCGACA 308
Query 347 CATCCCCAATCCTTCCCT-CTGATCCTTACCAGA-AGTCTCGAGCTAGATTTTGGG-CTG 403
| ||| ||||| |||| | ||||||||||||| || ||| ||| |||||||||| | |
Sbjct 309 AAAACCCTATCCT-CCCTTCCGATCCTTACCAGAGAG-CTCAAGCCAGATTTTGGGTC-G 365
Query 404 AATTCATCGACAAAAAG-T-TTTACGACCCATCATGG-AAGGTATGGGCAA-C-AATGGG 458
| ||| |||||| ||| | ||| || ||| || | ||| | ||| ||| | || ||
Sbjct 366 ATTTCGTCGACACCAAGCTGTTT--GAGCCAGCA-GATAAGATCTGG-CAAACTAAAGG- 420
Query 459 CGAAGAACATGCAG-CAGTGAAGAAGGAAT-TGTTGGAA-CATTTCAAGACACTTGAGA- 514
||| ||||| | || ||| ||||| || | | ||| || || || ||||| ||||| |
Sbjct 421 CGAGGAACAAG-AGACAGCCAAGAAAGAGTATATTG-AAGCACTT-AAGACTCTTGA-AT 476
Query 515 CAGAGCTCGGAGACAAACCTTA-TTACGGTGGTGA-AGTATTTGGATACCTAGACATTGC 572
| ||||| |||||||||||||| || ||||| || | |||||| | | |||| |||||
Sbjct 477 CTGAGCTTGGAGACAAACCTTACTTT-GGTGGAGATAC-ATTTGGGTTCGTAGATATTGC 534
Query 573 -ATTAATGGGATACTACAGCTGGTTC-AAGGCCATG-GAGAAATTTGGTGAA-TTCAGTA 628
|| | ||| ||| |||||||||||| ||| | || |||||||| | | || ||||| |
Sbjct 535 CATGACTGG-ATATTACAGCTGGTTCGAAG-C-ATCAGAGAAATTAGCT-AACTTCAGCA 590
Query 629 TCGAAACAGAGTTTCCTATATTGACTA-CGT-GGACCAAGAGGTGTTTGGAAAGAGAGAG 686
||||| |||||| ||| | | ||| | | | || | ||| |||||||| | ||||| ||
Sbjct 591 TCGAACCAGAGTGTCCCACACTGA-TGGCTTCGG-CTAAGCGGTGTTTGCAGAGAGAAAG 648
Query 687 TGTGGTCAAGGCA-TTGGCTGATTCTGATAGGATCATTG 724
||||| ||| | || ||||||||| | |||| |||
Sbjct 649 CGTGGTTAAGTCTCTTCA-TGATTCTGAGAAGATCCTTG 686
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34691854470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5