BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17200.1
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471923 jgi|Araly1|471923|fgenesh2_kg.1__1877__AT1G17200.1 1282 0.0
> Ahg471923 jgi|Araly1|471923|fgenesh2_kg.1__1877__AT1G17200.1
Length=850
Score = 1282 bits (694), Expect = 0.0
Identities = 801/853 (94%), Gaps = 6/853 (1%)
Strand=Plus/Plus
Query 1 ACTTGTTTATAACCACATTTTCTCTCaaaatccataaaaagagagagagataaataaaga 60
|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1 ACTTATTTATAACCACATTTTCTCTCAGAATCCATAAAAAGAGAGAAAGATAAATAAAAA 60
Query 61 gaaaactaaagaagctagaagatggagaaaagTAATGATCATGACAAGGCTAGCCACGGC 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAACTGAAGAAGCTAGAAGATGGAGAAAAGTAATGATCATGACAAGGCTAGCCACGGC 120
Query 121 GGCTCCGGTGGTGGTGCCACGGAGAAGTGGGAGGAGACTAG-CCTCGGAATCCGAACTGC 179
|||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||| ||
Sbjct 121 GGCTCCGGTGGTGGTGCCACTGAGAAGTGGGAGGAGAGTAGTCCT-GGAATCCGAACCGC 179
Query 180 CGAGACAATGCTCCGGTTAGCTCCGGTGGGCCTTTGTGTTGCAGCACTTGTTGTCATGCT 239
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 CGAGACAATGCTCCGGTTAGCTCCGGTGGGGCTTTGTGTTGCAGCGCTTGTTGTCATGCT 239
Query 240 TAAGGACTCTGAGACTAATGAGTTCGGTTCAATTTCTTACTCCAATCTCACAGCCTTTAG 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TAAGGACTCCGAGACTAATGAGTTCGGTTCAATTTCTTACTCCAATCTCACAGCTTTTAG 299
Query 300 GTACTTGGTGCACGCAAATGGAATATGTGCAGGCTACTCTCTTCTATCAGCAGCCATTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTACTTGGTGCACGCAAATGGAATATGTGCAGGCTACTCTCTTCTATCAGCAGCCATTGC 359
Query 360 AGCGATGCCTCGTTCTTCTTCGACAATGCCTCGTGTTTGGACCTTCTTTTGTCTCGACCA 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AGCGATGCCTCGTTCTTCTTCGACAATGCCTCGTGTTTGGACCTTCTTCTGTCTCGACCA 419
Query 420 GCTTCTGACCTACCTGGTTCTTGCTGCTGGAGCTGTATCAGCTGAGGTTCTATACTTGGC 479
||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||
Sbjct 420 GCTTCTGACCTACCTGGTTCTTGCTGCCGGAGCAGTGTCAGCTGAAGTTCTATACTTAGC 479
Query 480 TTACAATGGAGACTCAGCCATTACTTGGAGCGATGCATGTAGCTCCTATGGCGGTTTCTG 539
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 TTACAATGGAGACTCAGCCATTACTTGGAGCGATGCATGTAGCTCCTACGGTGGTTTCTG 539
Query 540 TCATAGAGCCACTGCTTCTGTTATAATCACATTCTTTGTGGTTTGTTTCTACATCGTTCT 599
||||||||||||||||||||||||||||||||||| | |||||| |||||| || ||||
Sbjct 540 CCATAGAGCCACTGCTTCTGTTATAATCACATTCTTCGCGGTTTGCTTCTACCTCCTTCT 599
Query 600 CTCTCTAATCTCCTCTTATAAGCTCTTTACTCGCTTTGATCCTCCTTCCATTGTTGACTC 659
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CTCACTAATCTCCTCTTACAAGCTCTTTACTCGCTTTGATCCTCCTTCCATGGTTGACTC 659
Query 660 CGCCAAGAATCTCGAAGTCGCTGTCTTCGGAAGTTAGATCCTCCATTTGCTCTTCAAGTA 719
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CGACAAGACCCTCGAAGTCGCTGTCTTCGGAAGTTAGATCCTCCATTTGCTTTTCAAGTA 719
Query 720 CATCTAGTTTGTCATGTTTCAAATGTTGTGTGTTTTTAACTTTGGTCAAGAGAAAGAATG 779
|||||| ||||| | |||||| ||||||| | |||||||||||||| | |||||||||||
Sbjct 720 CATCTAATTTGTTAAGTTTCACATGTTGTCT-TTTTTAACTTTGGTGAGGAGAAAGAATG 778
Query 780 CTTATGTGTTTGCTCTTCTT-TCATTGCTTTTCTTCCTATTACGACTCGTCTAACTAA-T 837
||| ||||||||||||| || ||||||||||| |||||||||||||| |||||||||| |
Sbjct 779 CTTTTGTGTTTGCTCTTGTTGTCATTGCTTTTATTCCTATTACGACTGGTCTAACTAAAT 838
Query 838 TGAAGGGTATAAA 850
| |||| ||||||
Sbjct 839 TAAAGG-TATAAA 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5