BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17235.1
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471927 jgi|Araly1|471927|fgenesh2_kg.1__1881__AT1G17235.1 246 7e-65
> Ahg471927 jgi|Araly1|471927|fgenesh2_kg.1__1881__AT1G17235.1
Length=279
Score = 246 bits (133), Expect = 7e-65
Identities = 158/169 (93%), Gaps = 5/169 (3%)
Strand=Plus/Plus
Query 193 AACATGGGTGGATTTTTGGCAAAGAAGACGAACTCTAATTCCAAAATCAGGAACAGCTTC 252
|||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 115 AACATGGGTGGATTTTTGGC--AG-AGAAGAACTCTAATTCCAAAATCAGGAACAGCTTC 171
Query 253 ACTTCGAAATGCACTTCTCTGATGAAACAACAACATGCTCGTCTCTGTATAATTCGACTC 312
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 172 ACTTCGAAATGCTCTTCTCTGATGAAACGACAACATGCTCGTCTCTGTATAATTCGACTC 231
Query 313 TGCGCCACGATGCTCCTCCGCTCGTACA-CAGATCACGACGATTACTAA 360
|||||||| |||||||||||||| |||| | ||||||||||||| ||||
Sbjct 232 TGCGCCACAATGCTCCTCCGCTCTTACATC-GATCACGACGATTGCTAA 279
Score = 128 bits (69), Expect = 3e-29
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1 ATGTGTATAATACTCCATAGTTGTACGGCGAGATTACCTCAAGCGCAAAATCTTCAAATT 60
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGTGTTTAATACTCCATAGTTGTACGGCGAGATTACCTCACGCGCAAAATCTTCAAATT 60
Query 61 GAGCTAAAACAAGACCAA 78
||||||||||| ||||||
Sbjct 61 GAGCTAAAACAGGACCAA 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12820277904
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5