BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G17240.1
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920636 jgi|Araly1|920636|scaffold_101917.1 3162 0.0
Ahg476358 jgi|Araly1|476358|fgenesh2_kg.2__1488__AT1G72300.1 1591 0.0
> Ahg920636 jgi|Araly1|920636|scaffold_101917.1
Length=2247
Score = 3162 bits (1712), Expect = 0.0
Identities = 2055/2219 (93%), Gaps = 29/2219 (1%)
Strand=Plus/Plus
Query 1 ATGAGATCCAAAGCCAAAGGTCTTGTGAGACCATTAATCACAAAACCTGTACAGCCTCTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAGATCCAAAGCCAAAGGTCTTGTGAGACCATTAATCACAAAACCTGTACAGCCTCTG 80
Query 61 AGTTCTCACATGCATCTCTTCCTCCTCTGTATTCTTTTCCTATCTGCCCTCTTTCTTACA 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 81 AGTTCTCACATGCATCTCTTCCTCCTCTGTCTTCTTTTCCTATCTGCCCTCTTTCTTACA 140
Query 121 CTTTCAGAAGCTGTTTGTAACCTACAAGACCGAGAATCTCTCATATGGTTTTCCGGCAAT 180
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 141 CTTTCAGAAGCTGTCTGTAACCTACAAGACCGAGAATCTCTCATGTGGTTTTCCGGCAAT 200
Query 181 GTTTCTTCTTCTGTTTCTCCATTGAATTGGAATTTGTCCATTGATTGTTGTTCCTGGGAG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 GTTTCTTCTTCTGTTTCTCCTTTGAATTGGAATTTGTCCATTGATTGTTGTTCCTGGGAG 260
Query 241 GGAATTACCTGCGATGATTCATCAGATAGTCACGTCACTGTGATTTCCTTGCCCTCTAGA 300
||||||| |||||||| |||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 261 GGAATTATCTGCGATGGTTCATCAGATAGTCACGTCACTATGATTTCCTTGCCCTTTAGA 320
Query 301 GGACTCTCTGGCACTCTCGCTTCGTCTGTTCAGAACATTCACCGTCTCTCTCGTCTTGAT 360
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 321 GGACTCTCTGGCACTCTTGCTTCGTCTGTTCAGAACATTCACCGTCTCTCTCATCTCGAT 380
Query 361 CTTTCTTACAACCGTCTCTCGGGTCCTCTCCCACCAGGTTTTTTCTCGACCCTTGATCAA 420
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CTTTCTCATAACCGTCTCTCGGGTCCTCTCCCACCAGGTTTTTTCTCGACCCTTGATCAG 440
Query 421 CTCATGATTCTTAACCTTAGTTACAATAGCTTCAATGGTGAGTTGCCACTTGAACAAGCA 480
|||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 441 CTCATGGTTCTTAATCTTAGTCACAATAGCTTCAATGGTGAGCTGCCACTTGAACAAGCA 500
Query 481 TTTGGAAATGAAAGCAACAGATTCTTCTCAATTCAGACCCTTGATCTGTCGAGCAATCTT 540
|||||| ||| ||| ||||||||||| || | || ||| |||||||||| ||||||||
Sbjct 501 TTTGGAGATGGAAGTGACAGATTCTTCCCAGTCCATACCATTGATCTGTCAAGCAATCTC 560
Query 541 CTGGAAGGCGAAATTCTCCGTAGTTCTGTT--TACCTCCAGGGCA-CTATCAATTTAATC 597
|| |||| ||||| ||| ||| |||| | || ||||||| | ||||||||||||||
Sbjct 561 CTCCAAGGAGAAATCCTCAGTAATTCTATCGCTA--TCCAGGG-AGCTATCAATTTAATC 617
Query 598 AGTTTCAATGTTAGCAACAACAGCTTCACAGGTCCAATCCCTTCATTCATGTGCAGGAGT 657
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGTTTCAATGTTAGTAACAACAGCTTCACAGGTCCAATCCCTTCATTCATGTGCAGGAGT 677
Query 658 TCACCGCAGCTCAGCAAACTGGATTTTTCTTATAATGATTTTAGCGGCCATATCTCCCAA 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 678 TCACCGCAGCTCAGCAAACTGGATTTCTCTTATAATGATTTTAGCGGCCATATCTCCCAA 737
Query 718 GAATTAGGCAGATGTTTGAGGCTTACTGTTCTACAAGCAGGCTTCAACAACCTCTCTGGT 777
||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 738 GAATTAGGCAGATGTTTGAGGCTAAGTGTTCTACAAGCAGGCTTCAACAATCTCTCTGGT 797
Query 778 G-TAATACCAAGTGAAATCTACAATCTTTCTGAGCTGGAGCAACTCTTTCTGCCAGCCAA 836
|| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 798 AATA-TACCAAGTGAAATCTACAATCTTTCCGAGCTCGAGCAACTCTTTCTGCCAGCCAA 856
Query 837 TCAGCTTACCGGAAAGATCGATAATAACATCACC-AGGCTCAGGAAACTAACGTCGCTTG 895
||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 857 TCAGCTTACAGGAAAGATCGATAATAACATCACCCAG-CTCAGGAAACTAACGTCGCTTG 915
Query 896 CGCTTTACTCCAACCACCTTGAAGGAGAAATACCAATGGACATAGGTAACCTCTCCAGCC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AACTTTACTCCAACCACCTTGAAGGAGAAATACCAATGGACATAGGTAACCTCTCCAGCC 975
Query 956 TGCGTAGCCTCCAACTCCATATCAATAACATCAACGGTACAGTCCCGCTTTCTCTTGCAA 1015
|||||||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||||
Sbjct 976 TGCGTAGCCTTCAACTCCATATCAATAAAATCAATGGTACAGTCCCGCATTCTCTTGCAA 1035
Query 1016 ATTGTACTAAACTCGTCAAGTTGAATTTGAGGGTCAATCAGCTGGGAGGAGGCTTAACAG 1075
|||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1036 ATTGTACTAACCTCGTCAAGTTGAATTTGAGGGTCAATCGGCTGGGAGGAAGCTTAACAG 1095
Query 1076 AGCTCGAGTTTTCCCAGTTGCAGAGTCTTAAGGTTCTAGATCTCGGAAACAATAGCTTCA 1135
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1096 AGCTCGAGTTTTACCAGTTGCAGAGTCTTAGGGTTCTAGATCTCGGAAACAATAGCTTCA 1155
Query 1136 CTGGTGCTCTGCCTGATAAGATTTTTTCCTGCAAATCGCTCACTGCGATCAGATTTGCAG 1195
| |||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1156 CCGGTGATCTCCCTGATAAGATTTTCTCCTGCAAATCGCTCACGGCGATCAGATTTGCAG 1215
Query 1196 GCAACAAGTTAACGGGAGAGATATCTCCTCAAGTATTGGAACTTGAGTCTCTGTCGT-TC 1254
||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||||| |
Sbjct 1216 GCAACAAGTTAACCGGACAGATGTCTCCTCAAGTATTGGAACTTGAGTCCCTGTCGTAT- 1274
Query 1255 ATGGGTTTATCAGACAATAAACTGACGAACATTACAGGGGCTCTCAGCATTCTACAGGGC 1314
||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1275 ATGTCTTTTTCAGACAATAAACTGACGAACATTACAGGAGCTCTCAGCATTCTACAGGGA 1334
Query 1315 TGCAGGAAGTTGTCCACTCTAATTTTGGCAAAGAATTTTTACGATGAAACAGTTCCAAGC 1374
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1335 TGCAGGAAGTTGTCCACTCTAATCATGGCAAAGAATTTTTACGATGAAACAGTTCCAATC 1394
Query 1375 AAAGAAGACTTTCTTTCCCCAGATGGATTCCCCAAACTCCGAATATTTGGCGTCGGTGCA 1434
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1395 AAAGAAGACTTTCTTGCCCCAGATGGATTCCCCAAACTCCGAATATTTGGCGTAGGTGCA 1454
Query 1435 TGTAGATT-AAGAGGTGAAATACCAGCTTGGCTGATCAATCTCAATAAGGTAGAAGTTAT 1493
|||||||| || |||||||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 1455 TGTAGATTGAA-AGGTGAAATACCAGCTTGGCTGATTAATCTCAAGAAGGTAGAAGCTAT 1513
Query 1494 GGATCTGTCAATGAACAGATTCGTGGGGTCAATTCCGGGTTGGCTAGGAACTCTTCCAGA 1553
|||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 1514 GGATCTGTCAATGAACCGATTTGTGGGGTCAATTCCCGGTTGGTTAGGAACTCTTCCAGA 1573
Query 1554 CCTTTTCTACTTGGATCTTTCAGATAACCTACTTACAGGAGAGCTGCCAAAGGAACTCTT 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1574 CCTTTTCTACTTGGATCTTTCAGATAACCTACTTACAGGAGAGCTGCCAAAGGAAATCTT 1633
Query 1614 TCAACTAAGGGCTCTGATGTCTCAAAAGA--TA--AC--AG-A-AA-ATAACTATCTAGA 1664
|||||||||| |||||||||| ||||||| || || | | || | |||||||||||
Sbjct 1634 TCAACTAAGGTCTCTGATGTCCCAAAAGACCTACGACGCAACAGAAGAGAACTATCTAGA 1693
Query 1665 GCTGCCTATTTTTCTCAATCCCAATAACGTTACAACCAATCAGCAATACAAT-AAGCTGT 1723
||||||| ||||||||||||||| ||| ||||| |||||||||||||||||| || ||||
Sbjct 1694 GCTGCCTGTTTTTCTCAATCCCACTAATGTTACCACCAATCAGCAATACAATCAA-CTGT 1752
Query 1724 ATAGTTTCCCACCTACGATTTACATCAGAAGGAATAACCTGACAGGGAGTATACCAGTCG 1783
| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1753 ACAGCCTCCCACCTACGATTTACATCAGAAGGAATTACTTGACAGGGAGTATACCAGTCG 1812
Query 1784 AAGTTGGCCAGTTAAAGGTTCTTCATATCCTCGAGCTTCTTGGTAACAATTTGTCTGGCA 1843
| ||||||||||||||||||||||||||||| || |||| | |||||||||| |||||||
Sbjct 1813 AGGTTGGCCAGTTAAAGGTTCTTCATATCCTGGATCTTCATAGTAACAATTTATCTGGCA 1872
Query 1844 GCATCCCAGATGAACTGTCGAACCTCACCAACTTAGAGAGGCTGGACCTCTCCAACAA-T 1902
|||||||| |||||||||| |||||||||||| |||||||||||||||| |||||||| |
Sbjct 1873 GCATCCCATATGAACTGTCAAACCTCACCAACATAGAGAGGCTGGACCTGTCCAACAACT 1932
Query 1903 AATTTATCTGGTAGCATCCCTTGGTCGTTAACAAACCTCAA-TTTCCTGTCTTATTTCAA 1961
| |||||| ||||| ||||||||||||||||||| ||| || |||| |||||||||||||
Sbjct 1933 A-TTTATCCGGTAGAATCCCTTGGTCGTTAACAAGCCT-AAGTTTCATGTCTTATTTCAA 1990
Query 1962 CGTGGCTAACAACAGTCTCGAAGGGCCAATTCCCAGTGAAGGTCAGTTTGATACATTTCC 2021
|||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 1991 CGTGGCGAACAACAGTCTGGAAGGGCCAATTCCCAGAGGAGGTCAGTTTGATACATTTCC 2050
Query 2022 AAAAGCAAATTTTGAAGGAAACCCCTTGTTGTGCGGTGGTGTACTGCTGACTTCCTGTAA 2081
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2051 AAAAGCATATTTTGAAGGAAACCCCTTGTTGTGCGGTGGTGTACTGCTGACTTCCTGCAC 2110
Query 2082 ACCTACTAGAGCCAAAGAAAATGATGAGTTAAACAGAACATTTCTTATGGGGATTGCTAT 2141
|||| ||| | ||| | ||| ||||||||||| |||||||||||| |||||||||| ||
Sbjct 2111 ACCTGCTACAACCACGGGAAACGATGAGTTAAAGAGAACATTTCTTGTGGGGATTGCCAT 2170
Query 2142 TGGATACTTTCTCAGCTTTGTTTCGATCTTAGTGGTGCGTGCCTGGTGAGTGTAATGTA 2200
|||||||||| | |||||| |||| ||||||||||||||| || |||| ||||||||||
Sbjct 2171 TGGATACTTTATTAGCTTTATTTCTATCTTAGTGGTGCGTCCCCGGTGGGTGTAATGTA 2229
> Ahg476358 jgi|Araly1|476358|fgenesh2_kg.2__1488__AT1G72300.1
Length=3641
Score = 1591 bits (861), Expect = 0.0
Identities = 1686/2079 (81%), Gaps = 78/2079 (4%)
Strand=Plus/Plus
Query 45 ACCTGTACAGCCTCTGAGTTCTCACATGCATCTCTTCCTCC-TCTGTA--TTCTTTTCCT 101
||| ||| | ||| ||||| ||| |||| |||||| ||| | | || |||||| |||
Sbjct 207 ACCAGTAAAACCTTTGAGTCCTCGCATGGTTCTCTTTGTCCTTGTCTACGTTCTTTCCCT 266
Query 102 ATCTGCCCTCTTTCTTACACTTTCAGAAGCTGTTTGTAACCTACAAGACCGAGAATCTCT 161
|||| | ||||||||||| ||||||| ||||||||||| || || || ||||| |||||
Sbjct 267 TTCTGTCTTCTTTCTTACAGTTTCAGAGGCTGTTTGTAATCTTCAGGATCGAGATTCTCT 326
Query 162 CATATGGTTTTCCGGCAATGTTTCTTCTTCTGTTTCTCCATTGAATTGGAATTTGTCCAT 221
| | ||||| || ||||| || || ||| | | ||||| ||| ||||||||| |||||
Sbjct 327 CCTTTGGTTCTCTGGCAACGTATCATCTCCACTCTCTCCTTTGCATTGGAATTCGTCCAC 386
Query 222 TGATTGTTGTTCCTGGGAGGGAAT-TACCTGCGATGATTCAT-CAGATAGTCACGTCACT 279
||||||||| |||||||| || || | | || |||||||| | | || | || ||||||
Sbjct 387 TGATTGTTGCTCCTGGGAAGGTATCT-CTTGTGATGATTC-TCCCGAAAATCGTGTCACT 444
Query 280 GT-GATTTC-CTTGCCCTCTAGAGGACTCTCTGGCACTCTCGCTTCGTCTGTTCAGAA-C 336
| | ||| ||||||||||||||||||||||||| |||| | ||||||||| ||| |
Sbjct 445 -TCG-GTTCTTTTGCCCTCTAGAGGACTCTCTGGCAATCTCCCATCGTCTGTTTTGAATC 502
Query 337 ATTCACCGTCTCTCTCGTCTTGATCTTTCTTACAACCGTCTCTCGGGTCCTCTCCCACCA 396
| | ||||||||||||||| || |||||| | ||||||||||| ||||| ||||| |||
Sbjct 503 -TCCGCCGTCTCTCTCGTCTCGACCTTTCTCATAACCGTCTCTCTGGTCCACTCCCGCCA 561
Query 397 GGTTTTTTCTC-GACCCTTGATCAACTCATGATTCTTAACCTTAGTTACAATAGCTTCAA 455
| ||| |||| | |||||||||| ||| || ||||| | ||||||||||| || |||||
Sbjct 562 GATTTCCTCTCTG-CCCTTGATCAGCTCTTGGTTCTTGATCTTAGTTACAACAGTTTCAA 620
Query 456 TGGTGAGTTGCCACTTGAACAAGCATTTGGAAATGAAAGCAACAGATTC-TTCTCAATTC 514
||||| ||||||||| ||||| ||||||| |||| ||||||| || || ||| ||||||
Sbjct 621 AGGTGAATTGCCACTTCAACAATCATTTGGCAATGGAAGCAACGGAATCTTTC-CAATTC 679
Query 515 AGACCCTTGATCTGTCGAGCAATCTTCTGGAAGGCGAAATTCTCCGTA--GTTCTGTTTA 572
||||| ||||||| || ||||||||||| || || ||||| || || | |||||||||
Sbjct 680 AGACCGTTGATCTCTCCAGCAATCTTCTTGAGGGAGAAATCCT-CG-ACGGTTCTGTTTT 737
Query 573 CCTCCAGGGCACTATCAATTTAATCAGTTTCAATGTTAGCAACAACAGCTTCACAGGTCC 632
||| |||| || ||||||||| |||||||||||| || |||||||||||||| |||||
Sbjct 738 TCTCGAGGGTGCTTTCAATTTAACCAGTTTCAATGTCAGTAACAACAGCTTCACGGGTCC 797
Query 633 -AATCCCTTCATTCATGTGCAGGAGTTCACCGCAGCTCAGCAAACTGGATTTTTCTTATA 691
||| ||||| |||||||||| | |||||||||||||| |||||||||||| || || |
Sbjct 798 TAAT-CCTTCCTTCATGTGCACAACTTCACCGCAGCTCACCAAACTGGATTTCTCCTACA 856
Query 692 ATGATTTTAGCGGCCATA-TCTCCCAAGAATTAGGCAGATGTTTGAGGCTTACTGTTCTA 750
||||||| || || | | |||| ||||||||||||||||| | ||| || | ||||||
Sbjct 857 ATGATTTCAGTGGTGA-ACTCTCTCAAGAATTAGGCAGATGCTCGAGACTAAGTGTTCTT 915
Query 751 CAAGCAGGCTTCAACAACCTCTCTGGTGTAATACC-AAGTGAAATCTACAATCTTTCTGA 809
| ||||||||||||||| |||||||| | ||| || || ||||||||||| ||| ||||
Sbjct 916 CGAGCAGGCTTCAACAATCTCTCTGGGGAAATCCCTAA-AGAAATCTACAAACTTCCTGA 974
Query 810 GCTGGAGCAACTCTTTCTGCCAGCCAATCAG-CTTACCGGAAAGATCGATAATAACATCA 868
||| |||||||||||| | |||| ||| | | ||| | || ||||| ||| || || |
Sbjct 975 GCTCGAGCAACTCTTTTTACCAGTCAA-CCGTCTTTCTGGCAAGATTGATGATGGGATTA 1033
Query 869 C-CAGGCTCAGGAAACTAACGTCGCTTGCGCTTTACTCCAACCACCTTGAAGGAGAAATA 927
| | | |||| ||||| || | ||||| |||||||| ||| ||||||||||||||||||
Sbjct 1034 CTC-GTCTCACCAAACTGACATTGCTTGAGCTTTACTTCAATCACCTTGAAGGAGAAATA 1092
Query 928 CC-AATGGACATAGGTAACCTCTCCAGCCTGCGTAGCCTCCAACTCCATATCAATAACAT 986
|| ||| || |||||||| || |||| ||| |||||||||||||||||||||||||| |
Sbjct 1093 CCAAAT-GATATAGGTAAGCTTTCCAAACTGAGTAGCCTCCAACTCCATATCAATAACCT 1151
Query 987 CAAC-GG-TACAGTCCCGCTTTCTCTTGCAAATTGTACTAAA-CTCGTCAAGTTGAATTT 1043
| || || | | ||||| ||||||| || ||||| || ||| ||||| |||||||||||
Sbjct 1152 C-ACGGGTTTTA-TCCCGGTTTCTCTCGCCAATTGCAC-AAATCTCGTGAAGTTGAATTT 1208
Query 1044 GA-GGGTCAATCAGCTGGGAGGAGGCTTAACAGAGCTCGAGTTTTCCCAGTTGCAGAGTC 1102
| | || ||| ||||||||||| ||| | | | | || || |||||||| ||||| |
Sbjct 1209 -ACGAGTTAATAAGCTGGGAGGAAATTTATCGGCGATAGACTTCTCCCAGTTTCAGAG-C 1266
Query 1103 TTAAG-GTTCTAGATCTCGGAAACAATAGCTTCACTGGTG--CTCTGCCTGATAAGATTT 1159
| || |||| || || |||||||||||||||||||| | || ||| | | |||
Sbjct 1267 CTCAGCATTCTGGACCTTGGAAACAATAGCTTCACTGGGGAATTC-CCCT-CCACGGTTT 1324
Query 1160 TTTCCTGCAAATCGCTCACTGCGATCAGATTTGCAGGCAACAAGTTAACGGGAGAGATAT 1219
||||||||| || | || || || || |||||||||||||||||||||||| ||||||
Sbjct 1325 ACTCCTGCAAAACGATGACAGCAATGAGGTTTGCAGGCAACAAGTTAACGGGACAGATAT 1384
Query 1220 CTCCTCAAGTATTGGAACTT-GAGTCTCTGTCGTTCATGGGTTTATCAGACAAT-AAACT 1277
||||||||||| ||||| || || || ||||||||| | ||| ||||||||| ||| |
Sbjct 1385 CTCCTCAAGTACTGGAA-TTGGAATCCCTGTCGTTCTTTACTTTTTCAGACAATCAAA-T 1442
Query 1278 GACGAACATTACAGGGGCTCTCAGCATTCTACAGGGCTGCAGGAAGTTGTCCACTCTAAT 1337
||| ||| ||||||| |||||| ||||||| || ||||||| |||| |||| ||||| ||
Sbjct 1443 GACAAACCTTACAGGTGCTCTCCGCATTCTGCAAGGCTGCAAGAAGCTGTCTACTCTGAT 1502
Query 1338 TTTGGCAAAGAATTTTTACGATGAAACAGTTCCAAGC-AAAGAAGACTTTCTTTCCCCAG 1396
||||||||||||||||||| |||||||| |||||| ||| |||||||||| |||
Sbjct 1503 CATGGCAAAGAATTTTTACGACGAAACAGTACCAAGCGAAA-TAGACTTTCTTGATTCAG 1561
Query 1397 ATGGATTCCCCAA-ACTCCGAATATTTGGCGTCGGTGCATGTAGATT-AAGAGGTGAAAT 1454
||||||| |||| |||| ||| || || |||||||||| ||||| || |||||||||
Sbjct 1562 ATGGATT-TCCAAGCCTCCAAATCTTCGGTATCGGTGCATGCAGATTGAA-AGGTGAAAT 1619
Query 1455 ACCAGCTTGGCTGATCAATCTCAATAAGGTAGAAGTTATGGATCTGTCAATGAACAGA-T 1513
|||||||||||||||||| ||| | | |||||||||||||||||||||||||||| || |
Sbjct 1620 ACCAGCTTGGCTGATCAAGCTCCAGAGGGTAGAAGTTATGGATCTGTCAATGAACCGACT 1679
Query 1514 TCGTGGGGTCAATTCCGGGTTGGCTAGGAACTCTTCCAGACCTTTTCTACTTGGATCTTT 1573
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 T-GTGGGGTCAATTCCCGGTTGGCTAGGAACTCTTCCAGACCTTTTCTACTTGGATCTTT 1738
Query 1574 CAGATAACCTACTTACAGGAGAGCTGCCAAAGGAACTCTTTCAACTAAGGGCTCTGATGT 1633
| |||||| | || ||||||||||| || |||||||| ||||| || |||||||||||||
Sbjct 1739 CCGATAACTTGCTAACAGGAGAGCTTCCGAAGGAACTGTTTCAGCTGAGGGCTCTGATGT 1798
Query 1634 CTCAAAAG--ATAAC-A-G-AA-A-AT---AACTATCTAGAGCTGCCTATTTTTCTCAAT 1683
| |||||| ||| | | | || | | ||||||||||||||||| ||||| |||||
Sbjct 1799 CCCAAAAGGCATA-CTATGCAACAGAGCGGAACTATCTAGAGCTGCCGGTTTTTGTCAAT 1857
Query 1684 CCCAATAACGTTACAACCAATCAGCAATACAATAAGCTGTATAGTTTCCCACCTACGATT 1743
|||||||| || || |||||||||||||||||| |||| | || |||||||||||||
Sbjct 1858 CCCAATAATGTCACCACCAATCAGCAATACAATCAGCTATCCAGCCTCCCACCTACGATA 1917
Query 1744 TACATCAGAAGGAATAACCTGACAGGGAGTATACCAGTCGAAGTTGGCCAGTTAAAGGTT 1803
|||||||| ||||||||| |||| |||||||||||||| || || || ||| ||||||||
Sbjct 1918 TACATCAGGAGGAATAACTTGACTGGGAGTATACCAGTGGAGGTCGGACAGCTAAAGGTT 1977
Query 1804 CTTCATATCCTCGAGCTTCTTGGTAACAATTTGTCTGGCAGCATCCCAGATGAACTGTCG 1863
|| |||||||| |||||||| |||| ||||| || ||||||||||| |||||| ||||
Sbjct 1978 CTCCATATCCTGGAGCTTCTAAGTAATAATTTTTCGGGCAGCATCCCCGATGAATTGTCA 2037
Query 1864 AACCTCACCAACTTAGAGAGGCTGGACCTCTCCAACAATAATTTATCTGGTAGCATCCCT 1923
|||||||| |||||||||||||||||||| |||||||| ||| | || ||||| || |||
Sbjct 2038 AACCTCACAAACTTAGAGAGGCTGGACCTGTCCAACAACAATCTCTCCGGTAGAATTCCT 2097
Query 1924 TGGTCGTTAACAA-ACCTCAATTTCCTGTCTTATTTCAACGTGGCTAACAACAGTCTC-G 1981
||||| | || || || ||||| |||| |||||||| || || ||||||| |||| |
Sbjct 2098 TGGTCACTCACGGGAC-TCCATTTCATGTCCTATTTCAATGTTGCAAACAACACTCTCAG 2156
Query 1982 AAGGGCCAATTCCCA--GTGAAGGTCAGTTTGATACATTTCCAAAAGCAAATTTTGAAGG 2039
||||| || |||| | || | ||||||||||| || ||||||||| ||||||||||
Sbjct 2157 T-GGGCCGATACCCACAGGGA-GC-CAGTTTGATACCTTCCCAAAAGCATATTTTGAAGG 2213
Query 2040 AAACCCCTTGTTGTGCGGTGGTGTACTGCTGACTTCCTG 2078
|||||||||| |||||||||| |||||||| || |||||
Sbjct 2214 AAACCCCTTGCTGTGCGGTGGCGTACTGCTAACCTCCTG 2252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86693397620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5